Draft genome sequence of Methylobacterium mesophilicum strain SR1.6/6, isolated from Citrus sinensis

Genome Announcements

Volumn 1, Issue 3, 2013, Pages

  Almeida, Diogo Marinho ^a   Dini Andreote, Francisco ^b   Camargo Neves, Aline Aparecida ^b   Jucá Ramos, Rommel Thiago ^a   Andreote, Fernando Dini ^b   Carneiro, Adriana Ribeiro ^a   Souza Lima, André Oliveira de ^c   Caracciolo Gomes de Sá, Pablo Henrique ^a   Ribeiro Barbosa, Maria Silvanira ^a   Araújo, Welington Luiz ^b   Silva, Artur ^a  

^a FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

^c UNIVERSIDADE DO VALE DO ITAJAÍ   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84997766100     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00356-13     Document Type: Article

References (15)

1. Araújo WL, Marcon J, Maccheroni W, Van Elsas JD, Van Vuurde JW, Azevedo JL. 2002. Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants. Appl. Environ. Microbiol. 68:4906-4914.
2. Dourado MN, Andreote FD, Dini-Andreote F, Conti R, Araújo JM, Araújo WL. 2012. Analysis of 16S rRNA and mxaF genes revealing insights into Methylobacterium niche-specific plant association. Genet. Mol. Biol. 35:142-148.
3. Madhaiyan M, Poonguzhali S, Sundaram SP, Sa TM. 2006. A new insight into foliar applied methanol influencing phylloplane methylotrophic dynamics and growth promotion of cotton (Gossypium hirsutum L.) and sugarcane (Saccharum officinarum L.). Environ. Exp. Bot. 57: 168-176.
4. Lacava PT, Li WB, Araújo WL, Azevedo JL, Hartung JS. 2006. Rapid, specific and quantitative assays for the detection of the endophytic bacterium Methylobacterium mesophilicum in plants. J. Microbiol. Methods 65:535-541.
5. Lacava PT, Araújo WL, Marcon J, Maccheroni W, Jr, Azevedo JL. 2004. Interaction between endophytic bacteria from citrus plants and the phytopathogenic bacteria Xylella fastidiosa, causal agent of citrus-variegated chlorosis. Lett. Appl. Microbiol. 39:55-59.
6. Pomini AM, Cruz PL, Gai C, Araújo WL, Marsaioli AJ. 2009. Longchain acyl-homoserine lactones from Methylobacterium mesophilicum: synthesis and absolute configuration. J. Nat. Prod. 72:2125-2129.
7. Gai CS, Lacava PT, Quecine MC, Auriac MC, Lopes JR, Araújo WL, Miller TA, Azevedo JL. 2009. Transmission of Methylobacterium mesophilicum by Bucephalogonia xanthophis for paratransgenic control strategy of citrus variegated chlorosis. J. Microbiol. 47:448-454.
8. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
9. Chevreux B, Wetter T, Suhai S. 1999. Genome sequence assembly using trace signals and additional sequence information, p 45-56. In Computer science and biology: proceedings of the German Conference on Bioinformatics 1999. Trier University, Hannover, Germany.
10. Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
11. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
12. Zdobnov EM, Apweiler R. 2001. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
13. Rutherford K, Parkhill J, Crook J, Horsnell T, Barrell B, Rice P. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
14. Sy A, Timmers AC, Knief C, Vorholt JA. 2005. Methylotrophic metabolism is advantageous for Methylobacterium extorquens during colonization of Medicago truncatula under competitive conditions. Appl. Environ. Microbiol. 71:7245-7252.
15. Chistoserdova L, Chen SW, Lapidus A, Lidstrom ME. 2003. Methylotrophy in Methylobacterium extorquensAM1from a genomic point of view. J. Bacteriol. 185:2980-2987.