-
1
-
-
78649704686
-
Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia
-
Op den Camp HJM, Islam T, Stott MB, Harhangi HR, Hynes A, Schouten S, Jetten MSM, Birkeland N-K, Pol A, Dunfield PF. 2009. Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia. Environ. Microbiol. Rep 1:293-306.
-
(2009)
Environ. Microbiol. Rep
, vol.1
, pp. 293-306
-
-
Op den Camp, H.J.M.1
Islam, T.2
Stott, M.B.3
Harhangi, H.R.4
Hynes, A.5
Schouten, S.6
Jetten, M.S.M.7
Birkeland, N.-K.8
Pol, A.9
Dunfield, P.F.10
-
4
-
-
26044478720
-
Biotechnological potential of aerobic methylotrophic bacteria: a review of current state and future prospects
-
Trotsenko YA, Doronina NV, Khmelenina VN. 2005. Biotechnological potential of aerobic methylotrophic bacteria: a review of current state and future prospects. Appl. Biochem. Microbiol. 41:433-441.
-
(2005)
Appl. Biochem. Microbiol
, vol.41
, pp. 433-441
-
-
Trotsenko, Y.A.1
Doronina, N.V.2
Khmelenina, V.N.3
-
5
-
-
79952790987
-
Genetic systems for moderately halo(alkali)philic bacteria of the genus Methylomicrobium
-
Ojala DS, Beck DA, Kalyuzhnaya MG. 2011. Genetic systems for moderately halo(alkali)philic bacteria of the genus Methylomicrobium. Methods Enzymol. 495:99-118.
-
(2011)
Methods Enzymol
, vol.495
, pp. 99-118
-
-
Ojala, D.S.1
Beck, D.A.2
Kalyuzhnaya, M.G.3
-
6
-
-
0034894280
-
Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the southeastern Transbaikal region and description of Methylomicrobium buryatense sp. nov
-
Kaluzhnaya MG, Khmelenina VN, Eshinimaev B, Suzina N, Nikitin D, Solonin A, Lin JL, McDonald I, Murrell C, Trotsenko YA. 2001. Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the southeastern Transbaikal region and description of Methylomicrobium buryatense sp. nov. Syst. Appl. Microbiol. 24:166-176.
-
(2001)
Syst. Appl. Microbiol
, vol.24
, pp. 166-176
-
-
Kaluzhnaya, M.G.1
Khmelenina, V.N.2
Eshinimaev, B.3
Suzina, N.4
Nikitin, D.5
Solonin, A.6
Lin, J.L.7
McDonald, I.8
Murrell, C.9
Trotsenko, Y.A.10
-
7
-
-
44449131579
-
Reclassification and emended description of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium
-
Kalyuzhnaya MG, Khmelenina V, Eshinimaev B, Sorokin D, Fuse H, Lidstrom M, Trotsenko Y. 2008. Reclassification and emended description of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium. Int. J. Syst. Evol. Microbiol. 58:591-596.
-
(2008)
Int. J. Syst. Evol. Microbiol
, vol.58
, pp. 591-596
-
-
Kalyuzhnaya, M.G.1
Khmelenina, V.2
Eshinimaev, B.3
Sorokin, D.4
Fuse, H.5
Lidstrom, M.6
Trotsenko, Y.7
-
9
-
-
43149086380
-
ALLPATHS: de novo assembly of wholegenome shotgun microreads
-
Butler J, MacCallum I, Kleber M, Shlyakhter IA, Belmonte MK, Lander ES, Nusbaum C, Jaffe DB. 2008. ALLPATHS: de novo assembly of wholegenome shotgun microreads. Genome Res. 18:810-820.
-
(2008)
Genome Res
, vol.18
, pp. 810-820
-
-
Butler, J.1
MacCallum, I.2
Kleber, M.3
Shlyakhter, I.A.4
Belmonte, M.K.5
Lander, E.S.6
Nusbaum, C.7
Jaffe, D.B.8
-
10
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
11
-
-
0031978181
-
Base-calling of automated sequencer traces using Phred
-
Ewing B, Green P. 1998. Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res. 8:186-194.
-
(1998)
II. Error probabilities. Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
13
-
-
0031955116
-
Consed: a graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
14
-
-
0038109024
-
Genes involved in the copper-dependent regulation of soluble methane monooxygenase of Methylococcus capsulatus (Bath): cloning, sequencing and mutational analysis
-
Csáki R, Bodrossy L, Klem J, Murrell JC, Kovács KL. 2003. Genes involved in the copper-dependent regulation of soluble methane monooxygenase of Methylococcus capsulatus (Bath): cloning, sequencing and mutational analysis. Microbiology 149:1785-1795.
-
(2003)
Microbiology
, vol.149
, pp. 1785-1795
-
-
Csáki, R.1
Bodrossy, L.2
Klem, J.3
Murrell, J.C.4
Kovács, K.L.5
-
15
-
-
80655146009
-
Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96
-
Svenning MM, Hestnes AG, Wartiainen I, Stein LY, Klotz MG, Kalyuzhnaya MG, Spang A, Bringel F, Vuilleumier S, Lajus A, Médigue C, Bruce DC, Cheng JF, Goodwin L, Ivanova N, Han J, Han CS, Hauser L, Held B, Land ML, Lapidus A, Lucas S, Nolan M, Pitluck S, Woyke T. 2011. Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96. J. Bacteriol. 193:6418-6419.
-
(2011)
J. Bacteriol
, vol.193
, pp. 6418-6419
-
-
Svenning, M.M.1
Hestnes, A.G.2
Wartiainen, I.3
Stein, L.Y.4
Klotz, M.G.5
Kalyuzhnaya, M.G.6
Spang, A.7
Bringel, F.8
Vuilleumier, S.9
Lajus, A.10
Médigue, C.11
Bruce, D.C.12
Cheng, J.F.13
Goodwin, L.14
Ivanova, N.15
Han, J.16
Han, C.S.17
Hauser, L.18
Held, B.19
Land, M.L.20
Lapidus, A.21
Lucas, S.22
Nolan, M.23
Pitluck, S.24
Woyke, T.25
more..
-
16
-
-
8844264574
-
Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)
-
Ward N, Larsen Ø, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D, Kang KH, Lewis M, Nelson KE, Methé B, Wu M, Heidelberg JF, Paulsen IT, Fouts D, Ravel J, Tettelin H, Ren Q, Read T, DeBoy RT, Seshadri R, Salzberg SL, Jensen HB, Birkeland NK, Nelson WC, Dodson RJ, Grindhaug SH, Holt I, Eidhammer I, Jonasen I, Vanaken S, Utterback T, Feldblyum TV, Fraser CM, Lillehaug JR, Eisen JA. 2004. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol. 2:1616-1628.
-
(2004)
PLoS Biol
, vol.2
, pp. 1616-1628
-
-
Ward, N.1
Larsen, Ø.2
Sakwa, J.3
Bruseth, L.4
Khouri, H.5
Durkin, A.S.6
Dimitrov, G.7
Jiang, L.8
Scanlan, D.9
Kang, K.H.10
Lewis, M.11
Nelson, K.E.12
Methé, B.13
Wu, M.14
Heidelberg, J.F.15
Paulsen, I.T.16
Fouts, D.17
Ravel, J.18
Tettelin, H.19
Ren, Q.20
Read, T.21
DeBoy, R.T.22
Seshadri, R.23
Salzberg, S.L.24
Jensen, H.B.25
Birkeland, N.K.26
Nelson, W.C.27
Dodson, R.J.28
Grindhaug, S.H.29
Holt, I.30
Eidhammer, I.31
Jonasen, I.32
Vanaken, S.33
Utterback, T.34
Feldblyum, T.V.35
Fraser, C.M.36
Lillehaug, J.R.37
Eisen, J.A.38
more..
-
17
-
-
79960619274
-
Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria
-
Campbell MA, Nyerges G, Kozlowski JA, Poret-Peterson AT, Stein LY, Klotz MG. 2011. Model of the molecular basis for hydroxylamine oxidation and nitrous oxide production in methanotrophic bacteria. FEMS Microbiol. Lett. 322:82-89.
-
(2011)
FEMS Microbiol. Lett
, vol.322
, pp. 82-89
-
-
Campbell, M.A.1
Nyerges, G.2
Kozlowski, J.A.3
Poret-Peterson, A.T.4
Stein, L.Y.5
Klotz, M.G.6
-
18
-
-
84871720360
-
Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations
-
Simon J, Klotz MG. 2013. Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations. Biochim. Biophys. Acta 1827:114-135.
-
(2013)
Biochim. Biophys. Acta
, vol.1827
, pp. 114-135
-
-
Simon, J.1
Klotz, M.G.2
-
19
-
-
84863393490
-
Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09
-
Boden R, Cunliffe M, Scanlan J, Moussard H, Kits KD, Klotz MG, Jetten MS, Vuilleumier S, Han J, Peters L, Mikhailova N, Teshima H, Tapia R, Kyrpides N, Ivanova N, Pagani I, Cheng JF, Goodwin L, Han C, Hauser L, Land ML, Lapidis A, Lucas S, Pitluck S, Woyke T, Stein L, Murrell JC. 2011. Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09. J. Bacteriol. 193: 7001-7002.
-
(2011)
J. Bacteriol
, vol.193
, pp. 7001-7002
-
-
Boden, R.1
Cunliffe, M.2
Scanlan, J.3
Moussard, H.4
Kits, K.D.5
Klotz, M.G.6
Jetten, M.S.7
Vuilleumier, S.8
Han, J.9
Peters, L.10
Mikhailova, N.11
Teshima, H.12
Tapia, R.13
Kyrpides, N.14
Ivanova, N.15
Pagani, I.16
Cheng, J.F.17
Goodwin, L.18
Han, C.19
Hauser, L.20
Land, M.L.21
Lapidis, A.22
Lucas, S.23
Pitluck, S.24
Woyke, T.25
Stein, L.26
Murrell, J.C.27
more..
|