Draft genome sequence of Pseudomonas veronii strain 1YdBTEX2

Genome Announcements

Volumn 1, Issue 3, 2013, Pages

  de Lima Morales, Daiana ^a   Chaves Moreno, Diego ^a   Jarek, Michael ^a   Vilchez Vargas, Ramiro ^a,b   Jauregui, Ruy ^a   Pieper, Dietmar H ^a  

^a HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84997496804     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00258-13     Document Type: Article

References (11)

1. Junca H, Pieper DH. 2004. Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries. Environ. Microbiol. 6:95-110.
2. Witzig R, Junca H, Hecht HJ, Pieper DH. 2006. Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases. Appl. Environ. Microbiol. 72:3504-3514.
3. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
4. Hernandez D, François P, Farinelli L, Osterås M, Schrenzel J. 2008. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res. 18:802-809.
5. Sommer DD, Delcher AL, Salzberg SL, Pop M. 2007. Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8:64.
6. Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. 2011. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27: 578-579.
7. Rissman AI, Mau B, Biehl BS, Darling AE, Glasner JD, Perna NT. 2009. Reordering contigs of draft genomes using the mauve aligner. Bioinformatics 25:2071-2073.
8. Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley SD, Hothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB, Thomson NR. 2009. Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol. 10:R51.
9. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
10. Burgdorf T, van der Linden E, Bernhard M, Yin QY, Back JW, Hartog AF, Muijsers AO, de Koster CG, Albracht SP, Friedrich B. 2005. The soluble NAD+-reducing [NiFe] hydrogenase from Ralstonia eutropha H16 consists of six subunits and can be specifically activated by NADPH. J. Bacteriol. 187:3122-3132.
11. Tribelli PM, Raiger Iustman LJ, Catone MV, Di Martino C, Revale S, Méndez BS, López NI. 2012. Genome sequence of the polyhydroxybutyrate producer Pseudomonas extremaustralis, a highly stress-resistant Antarctic bacterium. J. Bacteriol. 194:2381-2382.