Complete genome sequence of Serratia marcescens WW4

Genome Announcements

Volumn 1, Issue 2, 2013, Pages

  Chung, Wan Chia ^a   Chen, Ling Ling ^a   Lo, Wen Sui ^a,b   Kuo, Pei An ^a,c   Tu, Jenn ^a   Kuo, Chih Horng ^a,b  

^a INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^b NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^c NATIONAL TSING HUA UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84995906195     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00126-13     Document Type: Article

References (14)

1. Kuo PA, Kuo CH, Lai YK, Graumann PL, Tu J. 7 February 2013. Phosphate limitation induces the intergeneric inhibition of Pseudomonas aeruginosa by Serratia marcescens isolated from paper machines. FEMS Microbiol. Ecol. [Epub ahead of print.] http://dx.doi.org/10.1111/1574-6941.12086.
2. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
3. Lo WS, Chen LL, Chung WC, Gasparich GE, Kuo CH. 2013. Comparative genome analysis of Spiroplasma melliferum IPMB4A, a honeybeeassociated bacterium. BMC Genomics 14:22.
4. Hyatt D, Chen GL, LoCascio PF, Land ML, Larimer FW, Hauser LJ. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119.
5. Blattner FR, Plunkett G, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y. 1997. The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1462.
6. Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. 2007. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-W185.
7. Kanehisa M, Goto S. 2000. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28:27-30.
8. Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M. 2010. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 38:D355-D360.
9. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
10. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST +: architecture and applications. BMC Bioinformatics 10:421.
11. Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW. 2012. GenBank. Nucleic Acids Res. 40:D48-D53.
12. Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
13. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
14. Harris AKP, Williamson NR, Slater H, Cox A, Abbasi S, Foulds I, Simonsen HT, Leeper FJ, Salmond GPC. 2004. The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows speciesand strain-dependent genome context variation. Microbiology 150: 3547-3560.