-
1
-
-
77956499048
-
Influenza virus evolution, host adaptation, and pandemic formation
-
Taubenberger, J. K. & Kash, J. C. Influenza virus evolution, host adaptation, and pandemic formation. Cell Host & Microbe 7, 440-451 (2010).
-
(2010)
Cell Host & Microbe
, vol.7
, pp. 440-451
-
-
Taubenberger, J.K.1
Kash, J.C.2
-
2
-
-
0026576063
-
Evolution and ecology of influenza A viruses
-
Webster, R. G., Bean, W. J., Gorman, O. T., Chambers, T. M. & Kawaoka, Y. Evolution and ecology of influenza A viruses. Microbiological reviews 56, 152-179 (1992).
-
(1992)
Microbiological Reviews
, vol.56
, pp. 152-179
-
-
Webster, R.G.1
Bean, W.J.2
Gorman, O.T.3
Chambers, T.M.4
Kawaoka, Y.5
-
3
-
-
77953031228
-
1918 Influenza: The mother of all pandemics
-
Taubenberger, J. K. & Morens, D. M. 1918 Influenza: The mother of all pandemics. Rev Biomed 17, 69-79 (2006).
-
(2006)
Rev Biomed
, vol.17
, pp. 69-79
-
-
Taubenberger, J.K.1
Morens, D.M.2
-
4
-
-
3142579867
-
Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia
-
Li, K. et al. Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia. Nature 430, 209-213 (2004).
-
(2004)
Nature
, vol.430
, pp. 209-213
-
-
Li, K.1
-
5
-
-
84877785371
-
Human infection with a novel avian-origin influenza A (H7N9) virus
-
Gao, R. et al. Human infection with a novel avian-origin influenza A (H7N9) virus. New England Journal of Medicine 368, 1888-1897 (2013).
-
(2013)
New England Journal of Medicine
, vol.368
, pp. 1888-1897
-
-
Gao, R.1
-
6
-
-
33645986456
-
Host species barriers to influenza virus infections
-
Kuiken, T. et al. Host Species Barriers to Influenza Virus Infections. Science 312, 394-397 (2006).
-
(2006)
Science
, vol.312
, pp. 394-397
-
-
Kuiken, T.1
-
7
-
-
85011735237
-
H5N1 outbreaks and enzootic influenza
-
Webster, R. G., Peiris, M., Chen, H. & Guan, Y. H5N1 outbreaks and enzootic influenza. Biodiversity 7, 51-55 (2006).
-
(2006)
Biodiversity
, vol.7
, pp. 51-55
-
-
Webster, R.G.1
Peiris, M.2
Chen, H.3
Guan, Y.4
-
8
-
-
84888865092
-
Human infection with avian influenza A H6N1 virus: An epidemiological analysis
-
Wei, S.-H. et al. Human infection with avian influenza A H6N1 virus: An epidemiological analysis. The lancet Respiratory medicine 1, 771-778 (2013).
-
(2013)
The Lancet Respiratory Medicine
, vol.1
, pp. 771-778
-
-
Wei, S.-H.1
-
9
-
-
84905269053
-
Global and local persistence of influenza A (H5N1) virus
-
Li, X. et al. Global and local persistence of influenza A (H5N1) virus. Emerg Infect Dis 20, 1287-1295 (2014).
-
(2014)
Emerg Infect Dis
, vol.20
, pp. 1287-1295
-
-
Li, X.1
-
10
-
-
67449089781
-
Past, present, and possible future human infection with influenza virus A subtype H7
-
Belser, J. A., Bridges, C. B., Katz, J. M. & Tumpey, T. M. Past, present, and possible future human infection with influenza virus A subtype H7. Emerg Infect Dis 15, 859-65 (2009).
-
(2009)
Emerg Infect Dis
, vol.15
, pp. 859-865
-
-
Belser, J.A.1
Bridges, C.B.2
Katz, J.M.3
Tumpey, T.M.4
-
11
-
-
0033546991
-
Human infection with influenza H9N2
-
Peiris, M. et al. Human infection with influenza H9N2. The Lancet 354, 916-917 (1999).
-
(1999)
The Lancet
, vol.354
, pp. 916-917
-
-
Peiris, M.1
-
12
-
-
84894063527
-
Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: A descriptive study
-
Chen, H. et al. Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: A descriptive study. The Lancet 383, 714-721 (2014).
-
(2014)
The Lancet
, vol.383
, pp. 714-721
-
-
Chen, H.1
-
13
-
-
84936938128
-
Global circulation patterns of seasonal influenza viruses vary with antigenic drift
-
Bedford, T. et al. Global circulation patterns of seasonal influenza viruses vary with antigenic drift. Nature 523, 217-220 (2015).
-
(2015)
Nature
, vol.523
, pp. 217-220
-
-
Bedford, T.1
-
14
-
-
42349094829
-
The global circulation of seasonal influenza A (H3N2) viruses
-
Russell, C. A. et al. The global circulation of seasonal influenza A (H3N2) viruses. Science 320, 340-346 (2008).
-
(2008)
Science
, vol.320
, pp. 340-346
-
-
Russell, C.A.1
-
15
-
-
77954076631
-
Global migration dynamics underlie evolution and persistence of human influenza A (H3N2)
-
Bedford, T., Cobey, S., Beerli, P. & Pascual, M. Global migration dynamics underlie evolution and persistence of human influenza A (H3N2). Plos Pathog 6, e1000918 (2010).
-
(2010)
Plos Pathog
, vol.6
, pp. e1000918
-
-
Bedford, T.1
Cobey, S.2
Beerli, P.3
Pascual, M.4
-
16
-
-
84895733259
-
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza h3n2
-
Lemey, P. et al. Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2. Plos Pathog 10, e1003932 (2014).
-
(2014)
Plos Pathog
, vol.10
, pp. e1003932
-
-
Lemey, P.1
-
17
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza A virus
-
Rambaut, A. et al. The genomic and epidemiological dynamics of human influenza A virus. Nature 453, 615-619 (2008).
-
(2008)
Nature
, vol.453
, pp. 615-619
-
-
Rambaut, A.1
-
18
-
-
84929698840
-
Phylogeography of Avian influenza A H9N2 in China
-
Jin, Y. et al. Phylogeography of Avian influenza A H9N2 in China. BMC Genomics 15, 1 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 1
-
-
Jin, Y.1
-
19
-
-
84911455217
-
Enabling the'host jump': Structural determinants of receptor-binding specificity in influenza A viruses
-
Shi, Y., Wu, Y., Zhang, W., Qi, J. & Gao, G. F. Enabling the'host jump': structural determinants of receptor-binding specificity in influenza A viruses. Nature Reviews Microbiology 12, 822-831 (2014).
-
(2014)
Nature Reviews Microbiology
, vol.12
, pp. 822-831
-
-
Shi, Y.1
Wu, Y.2
Zhang, W.3
Qi, J.4
Gao, G.F.5
-
20
-
-
34249726105
-
Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds
-
Munster, V. J. et al. Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds. Plos Pathog 3, e61 (2007).
-
(2007)
Plos Pathog
, vol.3
, pp. e61
-
-
Munster, V.J.1
-
21
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond, A. J. & Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7, 214 (2007).
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
22
-
-
85004008376
-
Whole-genome sequence of a reassortant H5N6 avian influenza virus isolated from a live poultry market in China, 2013
-
Qi, X., Cui, L., Yu, H., Ge, Y. & Tang, F. Whole-genome sequence of a reassortant H5N6 avian influenza virus isolated from a live poultry market in China, 2013. Genome announcements 2, e00706-00714 (2014).
-
(2014)
Genome Announcements
, vol.2
, pp. e00706-00714
-
-
Qi, X.1
Cui, L.2
Yu, H.3
Ge, Y.4
Tang, F.5
-
23
-
-
0033529904
-
Molecular characterization of H9N2 influenza viruses: Were they the donors of the "internal" genes of H5N1 viruses in Hong Kong
-
Guan, Y., Shortridge, K. F., Krauss, S. & Webster, R. G. Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong? Proceedings of the National Academy of Sciences 96, 9363-9367 (1999).
-
(1999)
Proceedings of the National Academy of Sciences
, vol.96
, pp. 9363-9367
-
-
Guan, Y.1
Shortridge, K.F.2
Krauss, S.3
Webster, R.G.4
-
24
-
-
84895749932
-
Poultry carrying H9N2 act as incubators for novel human avian influenza viruses
-
Liu, D., Shi, W. & Gao, G. F. Poultry carrying H9N2 act as incubators for novel human avian influenza viruses. The Lancet 383, 869 (2014).
-
(2014)
The Lancet
, vol.383
, pp. 869
-
-
Liu, D.1
Shi, W.2
Gao, G.F.3
-
25
-
-
84920997073
-
Evolution of the H9N2 influenza genotype that facilitated the genesis of the novel H7N9 virus
-
Pu, J. et al. Evolution of the H9N2 influenza genotype that facilitated the genesis of the novel H7N9 virus. Proceedings of the National Academy of Sciences 112, 548-553 (2015).
-
(2015)
Proceedings of the National Academy of Sciences
, vol.112
, pp. 548-553
-
-
Pu, J.1
-
26
-
-
84893142866
-
Dynamic reassortments and genetic heterogeneity of the human-infecting influenza A (H7N9) virus
-
Cui, L. et al. Dynamic reassortments and genetic heterogeneity of the human-infecting influenza A (H7N9) virus. Nature communications 5, 3142-3142 (2014).
-
(2014)
Nature Communications
, vol.5
, pp. 3142
-
-
Cui, L.1
-
27
-
-
0034815075
-
Cocirculation of avian H9N2 and contemporary "human" H3N2 influenza A viruses in pigs in southeastern China: Potential for genetic reassortment
-
Peiris, J. et al. Cocirculation of avian H9N2 and contemporary "human" H3N2 influenza A viruses in pigs in southeastern China: potential for genetic reassortment? Journal of Virology 75, 9679-9686 (2001).
-
(2001)
Journal of Virology
, vol.75
, pp. 9679-9686
-
-
Peiris, J.1
-
28
-
-
84925637665
-
Global migration of influenza A viruses in swine
-
Nelson, M. I. et al. Global migration of influenza A viruses in swine. Nature communications 6 (2015).
-
(2015)
Nature Communications
, vol.6
-
-
Nelson, M.I.1
-
29
-
-
38349184863
-
Genetic analysis of four porcine avian influenza viruses isolated from Shandong, China
-
Shi, W. et al. Genetic analysis of four porcine avian influenza viruses isolated from Shandong, China. Archives of virology 153, 211-217 (2008).
-
(2008)
Archives of Virology
, vol.153
, pp. 211-217
-
-
Shi, W.1
-
30
-
-
24944577427
-
Birds, migration and emerging zoonoses: West Nile virus, Lyme disease, influenza A and enteropathogens
-
Reed, K. D., Meece, J. K., Henkel, J. S. & Shukla, S. K. Birds, migration and emerging zoonoses: West Nile virus, Lyme disease, influenza A and enteropathogens. Clinical medicine & research 1, 5-12 (2003).
-
(2003)
Clinical Medicine & Research
, vol.1
, pp. 5-12
-
-
Reed, K.D.1
Meece, J.K.2
Henkel, J.S.3
Shukla, S.K.4
-
31
-
-
33646033777
-
Global patterns of influenza A virus in wild birds
-
Olsen, B. et al. Global patterns of influenza A virus in wild birds. Science 312, 384-388 (2006).
-
(2006)
Science
, vol.312
, pp. 384-388
-
-
Olsen, B.1
-
32
-
-
82455208934
-
Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds
-
Lam, T. T. et al. Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds. Ecology letters 15, 24-33 (2012).
-
(2012)
Ecology Letters
, vol.15
, pp. 24-33
-
-
Lam, T.T.1
-
33
-
-
84920375388
-
Avian influenza H5N1 viral and bird migration networks in Asia
-
Tian, H. et al. Avian influenza H5N1 viral and bird migration networks in Asia. Proceedings of the National Academy of Sciences 112, 172-177 (2015).
-
(2015)
Proceedings of the National Academy of Sciences
, vol.112
, pp. 172-177
-
-
Tian, H.1
-
34
-
-
67650407532
-
Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans
-
Garten, R. J. et al. Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humans. Science 325, 197-201 (2009).
-
(2009)
Science
, vol.325
, pp. 197-201
-
-
Garten, R.J.1
-
35
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Katoh, K. & Standley, D. M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30, 772-780 (2013).
-
(2013)
Molecular Biology and Evolution
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
36
-
-
84995383832
-
-
CMS Family Portal. (08/07/2016)
-
CMS Family Portal. http://www. migratoryspecies. org/ (08/07/2016) (2016).
-
(2016)
-
-
-
37
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price, M. N., Dehal, P. S. & Arkin, A. P. FastTree 2-approximately maximum-likelihood trees for large alignments. Plos One 5, e9490 (2010).
-
(2010)
Plos One
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
38
-
-
80053959139
-
SPREAD: Spatial phylogenetic reconstruction of evolutionary dynamics
-
Bielejec, F., Rambaut, A., Suchard, M. A. & Lemey, P. SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 27, 2910-2912 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2910-2912
-
-
Bielejec, F.1
Rambaut, A.2
Suchard, M.A.3
Lemey, P.4
|