-
1
-
-
42349094829
-
The global circulation of seasonal influenza A (H3N2) viruses
-
Russell, C. A. et al. The global circulation of seasonal influenza A (H3N2) viruses. Science 320, 340-346 (2008).
-
(2008)
Science
, vol.320
, pp. 340-346
-
-
Russell, C.A.1
-
2
-
-
84895733259
-
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2
-
Lemey, P. et al. Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PLoS Pathog. 10, e1003932 (2014).
-
(2014)
PLoS Pathog.
, vol.10
-
-
Lemey, P.1
-
3
-
-
44449164435
-
The genomic and epidemiological dynamics of human influenza A virus
-
Rambaut, A. et al. The genomic and epidemiological dynamics of human influenza A virus. Nature 453, 615-619 (2008).
-
(2008)
Nature
, vol.453
, pp. 615-619
-
-
Rambaut, A.1
-
4
-
-
77954076631
-
Globalmigration dynamics underlie evolution and persistence of human influenza A (H3N2)
-
Bedford, T., Cobey, S., Beerli, P. & Pascual, M. Globalmigration dynamics underlie evolution and persistence of human influenza A (H3N2). PLoS Pathog. 6, e1000918 (2010).
-
(2010)
PLoS Pathog.
, vol.6
-
-
Bedford, T.1
Cobey, S.2
Beerli, P.3
Pascual, M.4
-
6
-
-
34848927452
-
Phylogenetic analysis reveals the global migration of seasonal influenza A viruses
-
Nelson, M. I., Simonsen, L., Viboud, C., Miller, M. A. & Holmes, E. C. Phylogenetic analysis reveals the global migration of seasonal influenza A viruses. PLoS Pathog. 3, e131 (2007).
-
(2007)
PLoS Pathog.
, vol.3
, pp. e131
-
-
Nelson, M.I.1
Simonsen, L.2
Viboud, C.3
Miller, M.A.4
Holmes, E.C.5
-
7
-
-
33846007284
-
Stochastic processes are key determinants of short-term evolution in influenza a virus
-
Nelson, M. I. et al. Stochastic processes are key determinants of short-term evolution in influenza a virus. PLoS Pathog. 2, e125 (2006).
-
(2006)
PLoS Pathog.
, vol.2
, pp. e125
-
-
Nelson, M.I.1
-
8
-
-
84874081317
-
The burden of influenzaB: A structuredliterature review.Am
-
Glezen, P. W., Schmier, J. K., Kuehn, C. M., Ryan, K. J. & Oxford, J. The burden of influenzaB: a structuredliterature review.Am. J.PublicHealth103, e43-e51(2013).
-
(2013)
J.PublicHealth
, vol.103
, pp. e43-e51
-
-
Glezen, P.W.1
Schmier, J.K.2
Kuehn, C.M.3
Ryan, K.J.4
Oxford, J.5
-
9
-
-
4544332903
-
Influenza-associated hospitalizations intheUnitedStates
-
Thompson, W. W. et al. Influenza-associated hospitalizations intheUnitedStates. J. Am. Med. Assoc. 292, 1333-1340 (2004).
-
(2004)
J. Am. Med. Assoc.
, vol.292
, pp. 1333-1340
-
-
Thompson, W.W.1
-
10
-
-
84867723807
-
Influenza research database: An integrated bioinformatics resource for influenza research and surveillance
-
Squires, R. B. et al. Influenza research database: an integrated bioinformatics resource for influenza research and surveillance. Influenza Other Respir. Viruses 6, 404-416 (2012).
-
(2012)
Influenza Other Respir. Viruses
, vol.6
, pp. 404-416
-
-
Squires, R.B.1
-
11
-
-
46649094365
-
The evolutionary dynamics of human influenza B virus
-
Chen, R. & Holmes, E. C. The evolutionary dynamics of human influenza B virus. J. Mol. Evol. 66, 655-663 (2008).
-
(2008)
J. Mol. Evol.
, vol.66
, pp. 655-663
-
-
Chen, R.1
Holmes, E.C.2
-
12
-
-
0029189525
-
The molecular epidemiology of influenza viruses
-
Cox, N. J. & Bender, C. A. The molecular epidemiology of influenza viruses. Semin. Virol. 6, 359-370 (1995).
-
(1995)
Semin. Virol.
, vol.6
, pp. 359-370
-
-
Cox, N.J.1
Bender, C.A.2
-
13
-
-
84898728051
-
Integrating influenza antigenic dynamics with molecular evolution
-
Bedford, T. et al. Integrating influenza antigenic dynamics with molecular evolution. eLife 3, e01914 (2014).
-
(2014)
ELife
, vol.3
-
-
Bedford, T.1
-
14
-
-
79960610117
-
Strength and tempo of selection revealed in viral gene genealogies
-
Bedford, T., Cobey, S. & Pascual, M. Strength and tempo of selection revealed in viral gene genealogies. BMC Evol. Biol. 11, 220 (2011).
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 220
-
-
Bedford, T.1
Cobey, S.2
Pascual, M.3
-
15
-
-
70349675664
-
Bayesian phylogeography finds its roots
-
Lemey, P., Rambaut, A., Drummond, A. J. & Suchard, M. A. Bayesian phylogeography finds its roots. PLOS Comput. Biol. 5, e1000520 (2009).
-
(2009)
PLOS Comput. Biol.
, vol.5
-
-
Lemey, P.1
Rambaut, A.2
Drummond, A.J.3
Suchard, M.A.4
-
16
-
-
0019960826
-
Influenzavirus infections in Seattle families,1975-1979. I. Study design, methods and the occurrence of infections by time and age
-
Fox, J. P., Hall, C. E., Cooney, M. K. & Foy, H. M. Influenzavirus infections in Seattle families,1975-1979. I. Study design, methods and the occurrence of infections by time and age. Am. J. Epidemiol. 116, 212-227 (1982).
-
(1982)
Am. J. Epidemiol.
, vol.116
, pp. 212-227
-
-
Fox, J.P.1
Hall, C.E.2
Cooney, M.K.3
Foy, H.M.4
-
17
-
-
0019948714
-
Estimating household and community transmission parameters for influenza
-
Longini, I.M. Jr, Koopman, J. S., Monto, A. S. & Fox, J. P. Estimating household and community transmission parameters for influenza. Am. J. Epidemiol. 115, 736-751 (1982).
-
(1982)
Am. J. Epidemiol.
, vol.115
, pp. 736-751
-
-
Longini, I.M.1
Koopman, J.S.2
Monto, A.S.3
Fox, J.P.4
-
18
-
-
33646006370
-
Synchrony, waves, and spatial hierarchies in the spread of influenza
-
Viboud, C. et al. Synchrony, waves, and spatial hierarchies in the spread of influenza. Science 312, 447-451 (2006).
-
(2006)
Science
, vol.312
, pp. 447-451
-
-
Viboud, C.1
-
19
-
-
34250673625
-
The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types
-
Recker, M., Pybus, O. G., Nee, S. & Gupta, S. The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types. Proc. Natl Acad. Sci. USA 104, 7711-7716 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 7711-7716
-
-
Recker, M.1
Pybus, O.G.2
Nee, S.3
Gupta, S.4
-
20
-
-
84873448879
-
The roles of competition and mutation in shaping antigenic and genetic diversity in influenza
-
Zinder, D., Bedford, T., Gupta, S. & Pascual, M. The roles of competition and mutation in shaping antigenic and genetic diversity in influenza. PLoS Pathog. 9, e1003104 (2013).
-
(2013)
PLoS Pathog.
, vol.9
-
-
Zinder, D.1
Bedford, T.2
Gupta, S.3
Pascual, M.4
-
21
-
-
33645235646
-
Comparison of the mutation rates of human influenza A and B viruses
-
Nobusawa, E. & Sato, K. Comparison of the mutation rates of human influenza A and B viruses. J. Virol. 80, 3675-3678 (2006).
-
(2006)
J. Virol.
, vol.80
, pp. 3675-3678
-
-
Nobusawa, E.1
Sato, K.2
-
22
-
-
33749603340
-
Immunogenicity and reactogenicity of 1 versus 2 doses of trivalent inactivated influenza vaccine in vaccine-naive 5-8-year-old children
-
Neuzil, K. M. et al. Immunogenicity and reactogenicity of 1 versus 2 doses of trivalent inactivated influenza vaccine in vaccine-naive 5-8-year-old children. J. Infect. Dis. 194, 1032-1039 (2006).
-
(2006)
J. Infect. Dis.
, vol.194
, pp. 1032-1039
-
-
Neuzil, K.M.1
-
23
-
-
0027210034
-
Probing of the receptor-binding sites of the H1 and H3 influenza A and influenza B virus hemagglutinins by synthetic and natural sialosides
-
Matrosovich, M. N. et al. Probing of the receptor-binding sites of the H1 and H3 influenza A and influenza B virus hemagglutinins by synthetic and natural sialosides. Virology 196, 111-121 (1993).
-
(1993)
Virology
, vol.196
, pp. 111-121
-
-
Matrosovich, M.N.1
-
24
-
-
70350595871
-
Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift
-
Hensley, S. et al. Hemagglutinin receptor binding avidity drives influenza A virus antigenic drift. Science 326, 734-736 (2009).
-
(2009)
Science
, vol.326
, pp. 734-736
-
-
Hensley, S.1
-
25
-
-
84864530626
-
Bayesianphylogenetics with BEAUti and the BEAST 1.7
-
Drummond, A. J.,Suchard,M.A., Xie, D.&Rambaut, A.Bayesianphylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969-1973 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
26
-
-
28944450584
-
Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
-
Shapiro, B., Rambaut, A. & Drummond, A. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol. Biol. Evol. 23, 7-9 (2006).
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 7-9
-
-
Shapiro, B.1
Rambaut, A.2
Drummond, A.3
-
27
-
-
78751478795
-
A Bayesian phylogenetic method to estimate unknown sequence ages
-
Shapiro, B. et al. A Bayesian phylogenetic method to estimate unknown sequence ages. Mol. Biol. Evol. 28, 879-887 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 879-887
-
-
Shapiro, B.1
-
28
-
-
9744245452
-
Bayesian estimation of ancestral character states on phylogenies
-
Pagel, M., Meade, A. & Barker, D. Bayesian estimation of ancestral character states on phylogenies. Syst. Biol. 53, 673-684 (2004).
-
(2004)
Syst. Biol.
, vol.53
, pp. 673-684
-
-
Pagel, M.1
Meade, A.2
Barker, D.3
-
29
-
-
84870797333
-
A counting renaissance: Combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection
-
Lemey, P., Minin, V. N., Bielejec, F., Pond, S. L. K. & Suchard, M. A. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection. Bioinformatics 28, 3248-3256 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 3248-3256
-
-
Lemey, P.1
Minin, V.N.2
Bielejec, F.3
Pond, S.L.K.4
Suchard, M.A.5
-
30
-
-
80051469138
-
Ancient hybridization and an Irish origin for themodern polar bear matriline
-
Edwards, C. J. et al. Ancient hybridization and an Irish origin for themodern polar bear matriline. Curr. Biol. 21, 1251-1258 (2011).
-
(2011)
Curr. Biol.
, vol.21
, pp. 1251-1258
-
-
Edwards, C.J.1
-
31
-
-
70349564118
-
Epidemiological characteristics of pandemic influenza H1N1 2009 and seasonal influenza infection
-
Kelly, H. A., Grant, K., Williams, S., Fielding, J. & Smith, D. Epidemiological characteristics of pandemic influenza H1N1 2009 and seasonal influenza infection. Med. J. Aust. 191, 146-149 (2009).
-
(2009)
Med. J. Aust.
, vol.191
, pp. 146-149
-
-
Kelly, H.A.1
Grant, K.2
Williams, S.3
Fielding, J.4
Smith, D.5
-
32
-
-
69949120069
-
Differences in patient age distribution between influenza A subtypes
-
Khiabanian, H., Farrell, G., St George, K. & Rabadan, R. Differences in patient age distribution between influenza A subtypes. PLoS ONE 4, e6832 (2009).
-
(2009)
PLoS ONE
, vol.4
, pp. e6832
-
-
Khiabanian, H.1
Farrell, G.2
St George, K.3
Rabadan, R.4
-
33
-
-
41549103774
-
Social contacts and mixing patterns relevant to the spread of infectious diseases
-
Mossong, J. et al. Social contacts and mixing patterns relevant to the spread of infectious diseases. PLoS Med. 5, e74 (2008).
-
(2008)
PLoS Med.
, vol.5
, pp. e74
-
-
Mossong, J.1
-
34
-
-
78149372436
-
Contact network structure explains the changing epidemiology of pertussis
-
Rohani, P., Zhong, X. & King, A. A. Contact network structure explains the changing epidemiology of pertussis. Science 330, 982-985 (2010).
-
(2010)
Science
, vol.330
, pp. 982-985
-
-
Rohani, P.1
Zhong, X.2
King, A.A.3
-
35
-
-
84861232312
-
Canalization of the evolutionary trajectory of the human influenza virus
-
Bedford, T., Rambaut,A.&Pascual,M.Canalization of the evolutionary trajectory of the human influenza virus. BMC Biol. 10, 38 (2012).
-
(2012)
BMC Biol.
, vol.10
, pp. 38
-
-
Bedford, T.1
Rambaut, A.2
Pascual, M.3
-
36
-
-
0037168563
-
Dynamics and selection of many-strain pathogens
-
Gog, J. R. & Grenfell, B. T. Dynamics and selection of many-strain pathogens. Proc. Natl Acad. Sci. USA 99, 17209-17214 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 17209-17214
-
-
Gog, J.R.1
Grenfell, B.T.2
-
37
-
-
0037763729
-
Traveling waves in a model of influenza A drift
-
Lin, J., Andreasen, V., Casagrandi, R. & Levin, A. S. Traveling waves in a model of influenza A drift. J. Theor. Biol. 222, 437-445 (2003).
-
(2003)
J. Theor. Biol.
, vol.222
, pp. 437-445
-
-
Lin, J.1
Andreasen, V.2
Casagrandi, R.3
Levin, A.S.4
-
38
-
-
3142682239
-
Mapping the antigenic and genetic evolution of influenza virus
-
Smith, D. J. et al. Mapping the antigenic and genetic evolution of influenza virus. Science 305, 371-376 (2004).
-
(2004)
Science
, vol.305
, pp. 371-376
-
-
Smith, D.J.1
|