메뉴 건너뛰기




Volumn 3, Issue 3, 2015, Pages

Genome sequence of the soil bacterium Janthinobacterium sp. KBS0711

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84994661338     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00689-15     Document Type: Article
Times cited : (22)

References (19)
  • 3
    • 1642340554 scopus 로고    scopus 로고
    • Impact of violacein-producing bacteria on survival and feeding of bacterivorous nanoflagellates
    • Matz C, Deines P, Boenigk J, Arndt H, Eberl L, Kjelleberg S, Jürgens K. 2004 Impact of violacein-producing bacteria on survival and feeding of bacterivorous nanoflagellates. Appl Environ Microbiol 70:1593-1599. http://dx.doi.org/10.1128/AEM.70.3.1593-1599.2004.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1593-1599
    • Matz, C.1    Deines, P.2    Boenigk, J.3    Arndt, H.4    Eberl, L.5    Kjelleberg, S.6    Jürgens, K.7
  • 4
    • 70350475894 scopus 로고    scopus 로고
    • The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus
    • Becker MH, Brucker RM, Schwantes CR, Harris RN, Minbiole KP. 2009 The bacterially produced metabolite violacein is associated with survival of amphibians infected with a lethal fungus. Appl Environ Microbiol 75:6635-6638. http://dx.doi.org/10.1128/AEM.01294-09.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6635-6638
    • Becker, M.H.1    Brucker, R.M.2    Schwantes, C.R.3    Harris, R.N.4    Minbiole, K.P.5
  • 5
    • 84979995344 scopus 로고    scopus 로고
    • Draft genome of Janthinobacterium sp. RA13 isolated from Lake Washington sediment
    • McTaggart TL, Shapiro N, Woyke T, Chistoserdova L. 2015. Draft genome of Janthinobacterium sp. RA13 isolated from Lake Washington sediment. Genome Announc 3(1):e01588-14. http://dx.doi.org/10.1128/genomeA.01588-14.
    • (2015) Genome Announc , vol.3 , Issue.1
    • McTaggart, T.L.1    Shapiro, N.2    Woyke, T.3    Chistoserdova, L.4
  • 6
    • 34548415876 scopus 로고    scopus 로고
    • Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria
    • Audic S, Robert C, Campagna B, Parinello H, Claverie J-M, Raoult D, DrancourtM. 2007. Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria. PLoS Genet 3:e138. http://dx.doi.org/10.1371/journal.pgen.0030138.
    • (2007) PLoS Genet , vol.3
    • Audic, S.1    Robert, C.2    Campagna, B.3    Parinello, H.4    Claverie, J.-M.5    Raoult, D.6    Drancourt, M.7
  • 7
    • 84861217607 scopus 로고    scopus 로고
    • Genome sequence of Janthinobacterium s. strain PAMC 25724, isolated from alpine glacier cryoconite
    • Kim SJ, Shin SC, Hong SG, Lee YM, Lee H, Lee J, Choi I-G, Park H. 2012 Genome sequence of Janthinobacterium sp. strain PAMC 25724, isolated from alpine glacier cryoconite. J Bacteriol 194:2096. http://dx.doi.org/10.1128/JB.00096-12.
    • (2012) J Bacteriol , vol.194 , pp. 2096
    • Kim, S.J.1    Shin, S.C.2    Hong, S.G.3    Lee, Y.M.4    Lee, H.5    Lee, J.6    Choi, I.-G.7    Park, H.8
  • 9
    • 33745836502 scopus 로고    scopus 로고
    • Aggregation and organic matter protection following tillage of a previously uncultivated soil
    • Grandy AS, Robertson GP. 2006. Aggregation and organic matter protection following tillage of a previously uncultivated soil. Soil Sci Soc Am J 70:1398-1406. http://dx.doi.org/10.2136/sssaj2005.0313.
    • (2006) Soil Sci Soc Am J , vol.70 , pp. 1398-1406
    • Grandy, A.S.1    Robertson, G.P.2
  • 10
    • 84864688131 scopus 로고    scopus 로고
    • Mapping the niche space of soil microorganisms using taxonomy and traits
    • Lennon JT, Aanderud ZT, Lehmkuhl BK, Schoolmaster DR. 2012. Mapping the niche space of soil microorganisms using taxonomy and traits. Ecology 93:1867-1879. http://dx.doi.org/10.1890/11-1745.1.
    • (2012) Ecology , vol.93 , pp. 1867-1879
    • Lennon, J.T.1    Aanderud, Z.T.2    Lehmkuhl, B.K.3    Schoolmaster, D.R.4
  • 11
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from highthroughput sequencing reads
    • Martin M. 2011. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet.journal 17:10-12. http://dx.doi.org/10.14806/ej.17.1.200.
    • (2011) EMBnet.journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 13
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 14
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 15
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: rapid prokaryotic genome annotation
    • Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068-2069. http://dx.doi.org/10.1093/bioinformatics/btu153.
    • (2014) Bioinformatics , vol.30 , pp. 2068-2069
    • Seemann, T.1
  • 16
    • 84870882427 scopus 로고    scopus 로고
    • Evaluation method for the potential functionome harbored in the genome and metagenome
    • Takami H, Taniguchi T, Moriya Y, Kuwahara T, Kanehisa M, Goto S. 2012 Evaluation method for the potential functionome harbored in the genome and metagenome. BMC Genomics 13:699. http://dx.doi.org/10.1186/1471-2164-13-699.
    • (2012) BMC Genomics , vol.13 , pp. 699
    • Takami, H.1    Taniguchi, T.2    Moriya, Y.3    Kuwahara, T.4    Kanehisa, M.5    Goto, S.6
  • 19
    • 79960394906 scopus 로고    scopus 로고
    • Quorum sensing in Chromobacterium violaceum: DNA recognition and gene regulation by the CviR receptor
    • Stauff DL, Bassler BL. 2011. Quorum sensing in Chromobacterium violaceum: DNA recognition and gene regulation by the CviR receptor. J Bacteriol 193:3871-3878. http://dx.doi.org/10.1128/JB.05125-11.
    • (2011) J Bacteriol , vol.193 , pp. 3871-3878
    • Stauff, D.L.1    Bassler, B.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.