-
1
-
-
84928582255
-
Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response
-
21 October
-
Oshkin IY, Beck DA, Lamb AE, Tchesnokova V, Benuska G, McTaggart TL, Kalyuzhnaya MG, Dedysh SN, Lidstrom ME, Chistoserdova L. 21 October 2014. Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response. ISME J. http://dx.doi.org/10.1038/ismej.2014.203.
-
(2014)
ISME J
-
-
Oshkin, I.Y.1
Beck, D.A.2
Lamb, A.E.3
Tchesnokova, V.4
Benuska, G.5
McTaggart, T.L.6
Kalyuzhnaya, M.G.7
Dedysh, S.N.8
Lidstrom, M.E.9
Chistoserdova, L.10
-
2
-
-
33947369808
-
Violacein and biofilm production in Janthinobacterium lividum
-
Pantanella F, Berlutti F, Passariello C, Sarli S, Morea C, Schippa S. 2007 Violacein and biofilm production in Janthinobacterium lividum. J Appl Microbiol 102:992-999. http://dx.doi.org/10.1111/j.1365-2672.2006.03155.x.
-
(2007)
J Appl Microbiol
, vol.102
, pp. 992-999
-
-
Pantanella, F.1
Berlutti, F.2
Passariello, C.3
Sarli, S.4
Morea, C.5
Schippa, S.6
-
3
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323:133-138. http://dx.doi.org/10.1126/science.1162986.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
Peluso, P.7
Rank, D.8
Baybayan, P.9
Bettman, B.10
Bibillo, A.11
Bjornson, K.12
Chaudhuri, B.13
Christians, F.14
Cicero, R.15
Clark, S.16
Dalal, R.17
Dewinter, A.18
Dixon, J.19
Foquet, M.20
Gaertner, A.21
Hardenbol, P.22
Heiner, C.23
Hester, K.24
Holden, D.25
Kearns, G.26
Kong, X.27
Kuse, R.28
Lacroix, Y.29
Lin, S.30
Lundquist, P.31
Ma, C.32
Marks, P.33
Maxham, M.34
Murphy, D.35
Park, I.36
Pham, T.37
Phillips, M.38
Roy, J.39
Sebra, R.40
Shen, G.41
Sorenson, J.42
Tomaney, A.43
Travers, K.44
Trulson, M.45
Vieceli, J.46
Wegener, J.47
Wu, D.48
Yang, A.49
Zaccarin, D.50
Zhao, P.51
Zhong, F.52
Korlach, J.53
Turner, S.54
more..
-
4
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. 2013 Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563-569. http://dx.doi.org/10.1038/nmeth.2474.
-
(2013)
Nat Methods
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
Alexander, D.H.2
Marks, P.3
Klammer, A.A.4
Drake, J.5
Heiner, C.6
Clum, A.7
Copeland, A.8
Huddleston, J.9
Eichler, E.E.10
Turner, S.W.11
Korlach, J.12
-
5
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
Hyatt D, Chen GL, LaCascio PF, Land ML, Larimer FW, Hauser LJ. 2010 Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. http://dx.doi.org/10.1186/1471-2105-11-119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
LaCascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
6
-
-
77953023066
-
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
-
Pati A, Ivanova NN, Mikhailova N, Ovchinnikova G, Hooper SD, Lykidis A, Kyrpides NC. 2010. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat Methods 7:455-457. http://dx.doi.org/10.1038/nmeth.1457.
-
(2010)
Nat Methods
, vol.7
, pp. 455-457
-
-
Pati, A.1
Ivanova, N.N.2
Mikhailova, N.3
Ovchinnikova, G.4
Hooper, S.D.5
Lykidis, A.6
Kyrpides, N.C.7
-
7
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
8
-
-
37549027613
-
Silva: a comprehensive online resource forquality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. 2007. Silva: a comprehensive online resource forquality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:2188-7196. http://dx.doi.org/10.1093/nar/gkm864.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
9
-
-
69949116874
-
IMG ER: a system for microbial genome annotation expert review and curation
-
Markowitz VM, Mavromatis K, Ivanova NN, Chen IMA, Chu K, Kyrpides NC. 2009. IMG ER: a system for microbial genome annotation expert review and curation. BioInformatics 25:2271-2278. http://dx.doi.org/10.1093/bioinformatics/btp393.
-
(2009)
BioInformatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
Mavromatis, K.2
Ivanova, N.N.3
Chen, I.M.A.4
Chu, K.5
Kyrpides, N.C.6
-
10
-
-
79955069864
-
Modularity of methylotrophy, revisited
-
Chistoserdova L. 2011. Modularity of methylotrophy, revisited. Environ Microbiol 13:2603-2622. http://dx.doi.org/10.1111/j.1462-2920.2011.02464.x.
-
(2011)
Environ Microbiol
, vol.13
, pp. 2603-2622
-
-
Chistoserdova, L.1
|