메뉴 건너뛰기




Volumn 9, Issue 12, 2014, Pages

Genomic, proteomic, morphological, and phylogenetic analyses of vB-EcoP-SU10, a podoviridae phage with C3 morphology

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DNA PACKAGING; ELECTRON MICROSCOPY; GENE SEQUENCE; GENE STRUCTURE; GENOME SIZE; GENOMICS; MASS SPECTROMETRY; MORPHOTYPE; NONHUMAN; PHYLOGENY; PODOVIRIDAE; PODOVIRIDAE PHAGE PHIECO32; PODOVIRIDAE PHAGE SU10; PROTEOMICS; SCANNING ELECTRON MICROSCOPY; STRUCTURAL GENE; TRANSMISSION ELECTRON MICROSCOPY; ULTRA THIN SECTION ELECTRON MICROSCOPY; VIRUS CAPSID; VIRUS GENOME; VIRUS MORPHOLOGY; VIRUS REPLICATION; CHEMISTRY; CHROMOSOMAL MAPPING; DNA SEQUENCE; GENETICS; MOLECULAR GENETICS; ULTRASTRUCTURE;

EID: 84994589544     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0116294     Document Type: Article
Times cited : (39)

References (32)
  • 2
    • 0242323595 scopus 로고    scopus 로고
    • Bacteriophage genomics
    • Hendrix RW (2003) Bacteriophage genomics. Curr Opin Microbiol 6: 506-511.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 506-511
    • Hendrix, R.W.1
  • 3
    • 0021367325 scopus 로고
    • Standard reference strains of Escherichia coli from natural populations
    • Ochman H, Selander RK (1984) Standard reference strains of Escherichia coli from natural populations. J Bacteriol 157: 690-693.
    • (1984) J Bacteriol , vol.157 , pp. 690-693
    • Ochman, H.1    Selander, R.K.2
  • 4
    • 0035007418 scopus 로고    scopus 로고
    • Frequency of morphological phage descriptions in the year 2000
    • Ackermann HW (2001) Frequency of morphological phage descriptions in the year 2000. Brief review. Arch Virol 146: 843-857.
    • (2001) Brief Review. Arch Virol , vol.146 , pp. 843-857
    • Ackermann, H.W.1
  • 5
    • 0030019094 scopus 로고    scopus 로고
    • Frequency of morphological phage descriptions in 1995
    • Ackermann HW (1996) Frequency of morphological phage descriptions in 1995. Arch Virol 141: 209-218.
    • (1996) Arch Virol , vol.141 , pp. 209-218
    • Ackermann, H.W.1
  • 6
    • 40649117354 scopus 로고    scopus 로고
    • Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage
    • Savalia D, Westblade LF, Goel M, Florens L, Kemp P, et al. (2008) Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage. J Mol Biol 377: 774-789.
    • (2008) J Mol Biol , vol.377 , pp. 774-789
    • Savalia, D.1    Westblade, L.F.2    Goel, M.3    Florens, L.4    Kemp, P.5
  • 7
    • 58449111642 scopus 로고    scopus 로고
    • Morphological and genetic analysis of three bacteriophages of serratia marcescens isolated from environmental water
    • Matsushita K, Uchiyama J, Kato S, Ujihara T, Hoshiba H, et al. (2009) Morphological and genetic analysis of three bacteriophages of Serratia marcescens isolated from environmental water. FEMS Microbiol Lett 291: 201-208.
    • (2009) FEMS Microbiol Lett , vol.291 , pp. 201-208
    • Matsushita, K.1    Uchiyama, J.2    Kato, S.3    Ujihara, T.4    Hoshiba, H.5
  • 8
    • 0016367433 scopus 로고
    • Unusual bacteriophages in salmonella newport
    • Ackermann HW, Petrow S, Kasatiya SS (1974) Unusual bacteriophages in Salmonella newport. J Virol 13: 706-711.
    • (1974) J Virol , vol.13 , pp. 706-711
    • Ackermann, H.W.1    Petrow, S.2    Kasatiya, S.S.3
  • 9
    • 78650773810 scopus 로고    scopus 로고
    • The genome sequence of enterobacterial phage 7-11, which possesses an unusually elongated head
    • Kropinski AM, Lingohr EJ, Ackermann HW (2011) The genome sequence of enterobacterial phage 7-11, which possesses an unusually elongated head. Arch Virol 156: 149-151.
    • (2011) Arch Virol , vol.156 , pp. 149-151
    • Kropinski, A.M.1    Lingohr, E.J.2    Ackermann, H.W.3
  • 10
    • 84870698201 scopus 로고    scopus 로고
    • Complete genome sequence of the novel lytic avian pathogenic coliphage NJ01
    • Li Y, Chen M, Tang F, Yao H, Lu C, et al. (2012) Complete genome sequence of the novel lytic avian pathogenic coliphage NJ01. J Virol 86: 13874-13875.
    • (2012) J Virol , vol.86 , pp. 13874-13875
    • Li, Y.1    Chen, M.2    Tang, F.3    Yao, H.4    Lu, C.5
  • 11
    • 84869128704 scopus 로고    scopus 로고
    • Complete genome sequence of the bacteriophages ECBP1 and ECBP2 isolated from two different Escherichia coli strains
    • Nho SW, Ha MA, Kim KS, Kim TH, Jang HB, et al. (2012) Complete genome sequence of the bacteriophages ECBP1 and ECBP2 isolated from two different Escherichia coli strains. J Virol 86: 12439-12440.
    • (2012) J Virol , vol.86 , pp. 12439-12440
    • Nho, S.W.1    Ha, M.A.2    Kim, K.S.3    Kim, T.H.4    Jang, H.B.5
  • 13
    • 0018691423 scopus 로고
    • Partial characterization of a new C3-type capsule-dissolving phage of streptococcus cremoris
    • Saxelin ML, Nurmiaho EL, Korhola MP, Sundman V (1979) Partial characterization of a new C3-type capsule-dissolving phage of Streptococcus cremoris. Can J Microbiol 25: 1182-1187.
    • (1979) Can J Microbiol , vol.25 , pp. 1182-1187
    • Saxelin, M.L.1    Nurmiaho, E.L.2    Korhola, M.P.3    Sundman, V.4
  • 17
    • 84994575153 scopus 로고    scopus 로고
    • 6.1.2 ed. Auckland, New Zealand: Biomatters Ltd
    • Biomatters (2013) Geneious. 6.1.2 ed. Auckland, New Zealand: Biomatters Ltd. Available: http://www.geneious.com/.
    • (2013)
  • 18
    • 48449106792 scopus 로고    scopus 로고
    • The jpred 3 secondary structure prediction server
    • Cole C, Barber JD, Barton GJ (2008) The Jpred 3 secondary structure prediction server. Nucleic Acids Res 36: W197-201.
    • (2008) Nucleic Acids Res , vol.36 , pp. W197-W201
    • Cole, C.1    Barber, J.D.2    Barton, G.J.3
  • 19
    • 0030854739 scopus 로고    scopus 로고
    • Trnascan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 20
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wisniewski JR, Zougman A, Nagaraj N, Mann M (2009) Universal sample preparation method for proteome analysis. Nat Methods 6: 359-362.
    • (2009) Nat Methods , vol.6 , pp. 359-362
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 22
    • 80054078476 scopus 로고    scopus 로고
    • Fast, scalable generation of high-quality protein multiple sequence alignments using clustal omega
    • Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, et al. (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7: 539.
    • (2011) Mol Syst Biol , vol.7 , pp. 539
    • Sievers, F.1    Wilm, A.2    Dineen, D.3    Gibson, T.J.4    Karplus, K.5
  • 23
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18: 691-699.
    • (2001) Mol Biol Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 24
    • 84856690450 scopus 로고    scopus 로고
    • Temporal regulation of gene expression of the Escherichia coli bacteriophage phiEco32
    • Pavlova O, Lavysh D, Klimuk E, Djordjevic M, Ravcheev DA, et al. (2012) Temporal Regulation of Gene Expression of the Escherichia coli Bacteriophage phiEco32. J Mol Biol 416: 389-399.
    • (2012) J Mol Biol , vol.416 , pp. 389-399
    • Pavlova, O.1    Lavysh, D.2    Klimuk, E.3    Djordjevic, M.4    Ravcheev, D.A.5
  • 25
    • 21844441735 scopus 로고    scopus 로고
    • The T7 group
    • Calendar R, editor New York: Oxford University Press
    • Molineux IJ (2006) The T7 group. In: Calendar R, editor. The Bacteriophages. New York: Oxford University Press. pp. 277-301.
    • (2006) The Bacteriophages , pp. 277-301
    • Molineux, I.J.1
  • 26
    • 0025602625 scopus 로고
    • Bacteriophage T7 DNA packaging. I. Plasmids containing a T7 replication origin and the T7 concatemer Junction are packaged into transducing particles during phage infection
    • Chung YB, Hinkle DC (1990) Bacteriophage T7 DNA packaging. I. Plasmids containing a T7 replication origin and the T7 concatemer junction are packaged into transducing particles during phage infection. J Mol Biol 216: 911-926.
    • (1990) J Mol Biol , vol.216 , pp. 911-926
    • Chung, Y.B.1    Hinkle, D.C.2
  • 27
    • 77949736141 scopus 로고    scopus 로고
    • New details about bacteriophage T7-host interactions
    • Qimron U, Tabor S, Richardson SS (2010) New Details about Bacteriophage T7-Host Interactions. Microbe magazine 5(3): 117-122.
    • (2010) Microbe Magazine , vol.5 , Issue.3 , pp. 117-122
    • Qimron, U.1    Tabor, S.2    Richardson, S.S.3
  • 28
    • 77049109494 scopus 로고    scopus 로고
    • CGUG: In silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1.9 mb
    • Mahadevan P, King JF, Seto D (2009) CGUG: in silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1.9 Mb. BMC Res Notes 2: 168.
    • (2009) BMC Res Notes , vol.2 , pp. 168
    • Mahadevan, P.1    King, J.F.2    Seto, D.3
  • 29
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 30
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • Lawrence JG, Ochman H (1998) Molecular archaeology of the Escherichia coli genome. Proc Natl Acad Sci U S A 95: 9413-9417.
    • (1998) Proc Natl Acad Sci U.S.A , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 31
    • 0027453388 scopus 로고
    • Simple methods for testing the molecular evolutionary clock hypothesis
    • Tajima F (1993) Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135: 599-607.
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 32
    • 0001329766 scopus 로고
    • Ultrastructure and host specificity of bacteriophages of streptococcus cremoris, streptococcus lactis subsp. Diacetylactis, and leuconostoc cremoris from finnish fermented milk "Viili"
    • Saxelin ML, Nurmiaho-Lassila EL, Merilainen VT, Forsen RI (1986) Ultrastructure and Host Specificity of Bacteriophages of Streptococcus cremoris, Streptococcus lactis subsp. diacetylactis, and Leuconostoc cremoris from Finnish Fermented Milk "Viili". Appl Environ Microbiol 52: 771-777.
    • (1986) Appl Environ Microbiol , vol.52 , pp. 771-777
    • Saxelin, M.L.1    Nurmiaho-Lassila, E.L.2    Merilainen, V.T.3    Forsen, R.I.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.