Temporal regulation of gene expression of the Escherichia coli bacteriophage phiEco32

Journal of Molecular Biology

Volumn 416, Issue 3, 2012, Pages 389-399

  Pavlova, Olga ^a   Lavysh, Daria ^b,c   Klimuk, Evgeny ^b,c   Djordjevic, Marko ^d   Ravcheev, Dmitry A ^e,f   Gelfand, Mikhail S ^e,g   Severinov, Konstantin ^a,b,c   Akulenko, Natalja ^a,b,c  

^a RUTGERS UNIVERSITY   (United States)

^b INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

^c INSTITUTE OF GENE BIOLOGY   (Russian Federation)

^d UNIVERSITY OF BELGRADE   (Serbia)

^e INSTITUTE FOR INFORMATION TRANSMISSION PROBLEMS   (Russian Federation)

^f BURNHAM INSTITUTE   (United States)

^g MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

bacteriophage; genome; RNA polymerase; transcription regulation; factor

Indexed keywords

HOLOENZYME; RNA POLYMERASE;

ARTICLE; BACTERIOPHAGE; BACTERIOPHAGE PHIECO32; BACTERIUM CULTURE; CONTROLLED STUDY; ESCHERICHIA COLI; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSCRIPTION; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION;

ESCHERICHIA COLI;

EID: 84856690450     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2012.01.002     Document Type: Article

References (14)

1. Hendrix R.W., Smith M.C., Burns R.N., Ford M.E., and Hatfull G.F. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage Proc. Natl Acad. Sci. USA 96 1999 2192 2197 (Pubitemid 29117890)
2. Savalia D., Westblade L.F., Goel M., Florens L., Kemp P., and Akulenko N. Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage J. Mol. Biol. 377 2008 774 789
3. Matsushita K., Uchiyama J., Kato S., Ujihara T., Hoshiba H., and Sugihara S. Morphological and genetic analysis of three bacteriophages of Serratia marcescens isolated from environmental water FEMS Microbiol. Lett. 291 2009 201 208
4. Kropinski A., Lingohr E., and Ackermann H. The genome sequence of enterobacterial phage 7-11, which possesses an unusually elongated head Arch. Virol. 156 2010 149 151
5. Tan Y., Zhang K., Rao X., Jin X., Huang J., and Zhu J. Whole genome sequencing of a novel temperate bacteriophage of P. aeruginosa: evidence of tRNA gene mediating integration of the phage genome into the host bacterial chromosome Cell. Microbiol. 9 2007 479 491 (Pubitemid 46092173)
6. Robison K., McGuire A.M., and Church G.M. A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome J. Mol. Biol. 284 1998 241 254 (Pubitemid 28542451)
7. Mironov A.A., Vinokurova N.P., and Gel'fand M.S. Software for analyzing bacterial genomes Mol. Biol. (Moscow) 34 2000 253 262
8. Huerta A.M., and Collado-Vides J. Sigma 70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals J. Mol. Biol. 333 2003 261 278 (Pubitemid 37188571)
9. Djordjevic M., Semenova E., Shraiman B., and Severinov K. Quantitative analysis of transcription strategy by a virulent bacteriophage Virology 354 2006 240
10. Semenova E., Djordjevic M., Shraiman B., and Severinov K. The tale of two RNA polymerases: transcription profiling and gene expression strategy of bacteriophage Xp10 Mol. Microbiol. 55 2005 764
11. Raivio T., and Silhavy T. Periplasmic stress and ECF sigma factors Annu. Rev. Microbiol. 55 2001 591 624 (Pubitemid 32978117)
12. Minakhin L., Semenova E., Liu J., Vasilov A., Severinova E., and Gabisonia T. Genome sequence and gene expression of Bacillus anthracis bacteriophage Fah J. Mol. Biol. 354 2005 1 15 (Pubitemid 41527210)
13. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual 2nd edit. 1989 Cold Spring Harbor Laboratory New York, NY
14. Kashlev M., Nudler E., Severinov K., Borukhov S., Komissarova N., and Goldfarb A. Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase Methods Enzymol. 274 1996 326 334 (Pubitemid 26353088)