Season-long dynamics of spinach downy mildew determined by spore trapping and disease incidence

Phytopathology

Volumn 106, Issue 11, 2016, Pages 1311-1318

  Choudhury, R A ^a   Koike, S T ^b   Fox, A D ^c   Anchieta, A ^d   Subbarao, K V ^a   Klosterman, S J ^d   McRoberts, N ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA COOPERATIVE EXTENSION   (United States)

^c Fox Weather LLC   (United States)

^d AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA;

BACTERIAL SPORE; CALIFORNIA; COPY NUMBER VARIATION; GENETICS; INCIDENCE; ISOLATION AND PURIFICATION; PARASITOLOGY; PERONOSPORA; PHYSIOLOGY; PLANT DISEASE; SEASON; SPECIES DIFFERENCE; SPINACH; WEATHER;

CALIFORNIA; DNA COPY NUMBER VARIATIONS; DNA, RIBOSOMAL; INCIDENCE; PERONOSPORA; PLANT DISEASES; SEASONS; SPECIES SPECIFICITY; SPINACIA OLERACEA; SPORES; WEATHER;

EID: 84994027753     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-12-15-0333-R     Document Type: Article

References (44)

1. Arnade, C., Calvin, L., and Kuchler, F. 2009. Consumer response to a food safety shock: The 2006 food-borne illness outbreak of E. coli O157:H7 linked to spinach. Appl. Econ. Perspect. Policy 31:734-750.
2. Byrne, J. M., Hausbeck, M. K., and Sconyers, L. E. 2005. Influence of environment on atmospheric concentrations of Peronospora antirrhini sporangia in field-grown snapdragon. Plant Dis. 89:1060-1066.
3. Byrne, J. M., Hausbeck, M. K., and Shaw, B. D. 2000. Factors affecting concentrations of airborne conidia of Oidium sp. among poinsettias in a greenhouse. Plant Dis. 84:1089-1095.
4. Carisse, O., McRoberts, N., and Brodeur, L. 2008. Comparison of monitoringand weather-based risk indicators of botrytis leaf blight of onion and determination of action thresholds. Can. J. Plant Pathol. 30:442-456.
5. Carisse, O., and Philion, V. 2002. Meteorological factors affecting periodicity and concentration of airborne spores of Bremia lactucae. Can. J. Plant Pathol. 24:184-193.
6. Carisse, O., Tremblay, D. M., Lévesque, C. A., Gindro, K., Ward, P., and Houde, A. 2009. Development of a TaqMan real-time PCR assay for quantification of airborne conidia of Botrytis squamosa and management of Botrytis leaf blight of onion. Phytopathology 99:1273-1280.
7. Carisse, O., Tremblay, D. M., McDonald, M. R., Brodeur, L., and McRoberts, N. 2011. Management of Botrytis leaf blight of onion: The Québec experience of 20 years of continual improvement. Plant Dis. 95:504-514.
8. Choi, Y. J., Hong, S. B., and Shin, H. D. 2007. Re-consideration of Peronospora farinosa infecting Spinacia oleracea as distinct species, Peronospora effusa. Mycol. Res. 111:381-391.
9. Choi, Y. J., Klosterman, S. J., Kummer, V., Voglmayr, H., Shin, H. D., and Thines, M. 2015. Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach. Mol. Phylogenet. Evol. 86:24-34.
10. Coop, L., Grove, G., Fox, A., Daly, C., Mahaffee, W., and Thomas, C. 2009. Novel delivery IPM tools in real time for decision support-pull. Phytopathology 99:S181.
11. Correll, J. C., Bluhm, B. H., Feng, C., Lamour, K., Du Toit, L. J., and Koike, S. T. 2011. Spinach: Better management of downy mildew and white rust through genomics. Eur. J. Plant Pathol. 129:193-205.
12. Dewdney, M. M., Biggs, A. R., and Turechek, W. W. 2007. A statistical comparison of the blossom blight forecasts of MARYBLYT and Cougarblight with receiver operating characteristic curve analysis. Phytopathology 97:1164-1176.
13. Eskalen, A., Faber, B., and Bianchi, M. 2013. Spore trapping and pathogenicity of fungi in the Botryosphaeriaceae and Diaporthaceae associated with avocado branch canker in California. Plant Dis. 97:329-332.
14. Falacy, J. S., Grove, G. G., Mahaffee, W. F., Galloway, H., Glawe, D. A., Larsen, R. C., and Vandemark, G. J. 2007. Detection of Erysiphe necator in air samples using the polymerase chain reaction and species-specific primers. Phytopathology 97:1290-1297.
15. Fontaine, M. C., Austerlitz, F., Giraud, T., Labbé, F., Papura, D., Richard-Cervera, S., and Delmotte, F. 2013. Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola. Mol. Ecol. 22:2771-2786.
16. Gent, D. H., Mahaffee, W. F., McRoberts, N., and Pfender, W. F. 2013. The use and role of predictive systems in disease management. Annu. Rev. Phytopathol. 51:267-289.
17. Gilles, T., Phelps, K., Clarkson, J. P., and Kennedy, R. 2004. Development of MILIONCAST, an improved model for predicting downy mildew sporulation on onions. Plant Dis. 88:695-702.
18. Granke, L. L., and Hausbeck, M. K. 2011. Dynamics of Pseudoperonospora cubensis sporangia in commercial cucurbit fields in Michigan. Plant Dis. 95:1392-1400.
19. Granke, L. L., Morrice, J. J., and Hausbeck, M. K. 2014. Relationships between airborne Pseudoperonospora cubensis sporangia, environmental conditions, and cucumber downy mildew severity. Plant Dis. 98:674-681.
20. Granke, L. L., Windstam, S. T., Hoch, H. C., Smart, C. D., and Hausbeck, M. K. 2009. Dispersal and movement mechanisms of Phytophthora capsici sporangia. Phytopathology 99:1258-1264.
21. Hanley, J. A., and McNeil, B. J. 1982. The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143:29-36.
22. Hughes, G., and Gonzales-Andujar, J. L. 1997. Simple rules with complex outcomes. Nature 387:241-242.
23. Hughes, G., and McRoberts, N. 2014. The structure of diagnostic information. Austral. Plant Pathol. 43:267-286.
24. Irish, B. M., Correll, J. C., Koike, S. T., and Morelock, T. E. 2007. Three new races of the spinach downy mildew pathogen identified by a modified set of spinach differentials. Plant Dis. 91:1392-1396.
25. Klosterman, S. J., Anchieta, A., McRoberts, N., Koike, S. T., Subbarao, K. V., Voglmayr, H., Choi, Y., Thines, M., and Martin, F. N. 2014. Coupling spore traps and quantitative PCR assays for detection of the downy mildew pathogens of spinach (Peronospora effusa) and beet (P. schachtii). Phytopathology 104:1349-1359.
26. Koike, S. T., Cahn, M., Cantwell, M., Fennimore, S., LeStrange, M., Natwick, E., Smith, R. F., and Takele, E. 2011. Spinach production in California. Publication 7212. University of California Divison of Agriculture and Natural Resources, Monterrey, CA.
27. LaMondia, J. A., and Aylor, D. E. 2001. Epidemiology and management of a periodically introduced pathogen. Biol. Invasions 3:273-282.
28. Lin, J. J., Noll, K. E., and Holsen, T. M. 1994. Dry deposition velocities as a function of particle size in the ambient atmosphere. Aerosol Sci. Technol. 20:239-252.
29. McKay, A. G., Floyd, R. M., and Boyd, C. J. 1992. Phosphonic acid controls downy mildew (Peronospora parasitica) in cauliflower curds. Anim. Prod. Sci. 32:127-129.
30. Ojiambo, P. S., and Holmes, G. J. 2011. Spatiotemporal spread of cucurbit downy mildew in the eastern United States. Phytopathology 101:451-461.
31. Peduto, F., Backup, P., Hand, E. K., Janousek, C. N., and Gubler, W. D. 2013. Effect of high temperature and exposure time on Erysiphe necator growth and reproduction: Revisions to the UC Davis powdery mildew risk index. Plant Dis. 97:1438-1447.
32. Hernández Plaza, E., Navarrete, L., Lacasta, C., and González-Andujar, J. L. 2012. Fluctuations in plant populations: Role of exogenous and endogenous factors. J. Veg. Sci. 23:640-646.
33. Savory, E. A., Granke, L. L., Quesada-Ocampo, L. M., Varbanova, M., Hausbeck, M. K., and Day, B. 2011. The cucurbit downy mildew pathogen Pseudoperonospora cubensis. Mol. Plant Pathol. 12:217-226.
34. Schmale, D. G., III, and Ross, S. D. 2015. Highways in the sky: Scales of atmospheric transport of plant pathogens. Annu. Rev. Phytopathol. 53:591-611.
35. Simko, I., Zhou, Y., and Brandl, M. T. 2015. Downy mildew disease promotes the colonization of romaine lettuce by Escherichia coli O157: H7 and Salmonella enterica. BMC Microbiol. 15:19.
36. Skelsey, P., Kessel, G. J. T., Rossing, W. A. H., and van der Werf, W. 2009. Parameterization and evaluation of a spatiotemporal model of the potato late blight pathosystem. Phytopathology 99:290-300.
37. Su, H., van Bruggen, A. H. C., Subbarao, K. V., and Scherm, H. 2004. Sporulation of Bremia lactucae affected by temperature, relative humidity, and wind in controlled conditions. Phytopathology 94:396-401.
38. Thiessen, L. D., Keune, J. A., Neill, T. M., Turechek, W. W., Grove, G. G., and Mahaffee, W. F. 2016. Development of a grower-conducted inoculum detection assay for management of grape powdery mildew. Plant Pathol. 65:238-249.
39. Turchin, P. 2003. Complex Population Dynamics: A Theoretical/Empirical Synthesis. Princeton University Press, Princeton, NJ.
40. Úrbez-Torres, J. R., Battany, M., Bettiga, L. J., Gispert, C., McGourty, G., Roncoroni, J., Smith, R. J., Verdegaal, P., and Gubler, W. D. 2010. Botryosphaeriaceae species spore-trapping studies in California vineyards. Plant Dis. 94:717-724.
41. van den Bosch, F., Frinking, H. D., Metz, J. A. J., and Zadoks, J. C. 1988. Focus expansion in plant disease. III: Two experimental examples. Phytopathology 78:919-925.
42. Wu, B. M., Subbarao, K. V., and van Bruggen, A. H. C. 2005. Analyses of the relationships between lettuce downy mildew and weather variables using geographic information system techniques. Plant Dis. 89:90-96.
43. Wu, B. M., Van Bruggen, A. H. C., Subbarao, K. V., and Pennings, G. G. H. 2001. Spatial analysis of lettuce downy mildew using geostatistics and geographic information systems. Phytopathology 91:134-142.
44. Yuen, J., and Hughes, G. 2002. Bayesian analysis of plant disease prediction. Plant Pathol. 51:407-412.