Isolation of a complete circular virus genome sequence from an Alaskan black-capped chickadee (Poecile atricapillus) gastrointestinal tract sample

Genome Announcements

Volumn 3, Issue 5, 2015, Pages

  Hanna, Zachary R ^a,b   Runckel, Charles ^c,d,f   Fuchs, Jérôme ^a,g   DeRisi, Joseph L ^c,d   Mindell, David P ^c,h   Hemert, Caroline Van ^e   Handel, Colleen M ^e   Dumbacher, John P ^a  

^a University of Californis   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^e U S GEOLOGICAL SURVEY   (United States)

^f Runckel and Associates   (United States)

^g SORBONNE UNIVERSITÉ   (France)

^h NATIONAL SCIENCE FOUNDATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84993508473     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01081-15     Document Type: Article

References (11)

1. Handel CM, Pajot LM, Matsuoka SM, Hemert CV, Terenzi J, Talbot SL, Mulcahy DM, Meteyer CU, Trust KA. 2010. Epizootic of beak deformities among wild birds in Alaska: an emerging disease in North America? Auk 127:882-898. http://dx.doi.org/10.1525/auk.2010.10111.
2. Schindler CW, Krolewski JJ, Rush MG. 1982. Selective trapping of circular double-stranded DNA molecules in solidifying agarose. Plasmid 7:263-270. http://dx.doi.org/10.1016/0147-619X(82)90007-5.
3. Acland A, Agarwala R, Barrett T, Beck J, Benson DA, Bollin C, Bolton E, Bryant SH, Canese K, Church DM, Clark K, DiCuccio M, Dondoshansky I, Federhen S, Feolo M, Geer LY, Gorelenkov V, Hoeppner M, Johnson M, Kelly C, Khotomlianski V, Kimchi A, Kimelman M, Kitts P, Krasnov S, Kuznetsov A, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Karsch-Mizrachi I, Murphy T, Ostell J, O'Sullivan C, Panchenko A, Phan L, Pruitt DPKD, Rubinstein W, Sayers EW, Schneider V, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Siyan K, Slotta D, et al. 2014. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 42:D7-D17.
4. Boratyn GM, Camacho C, Cooper PS, Coulouris G, Fong A, Ma N, Madden TL, Matten WT, McGinnis SD, Merezhuk Y, Raytselis Y, Sayers EW, Tao T, Ye J, Zaretskaya I. 2013. BLAST: a more efficient report with usability improvements. Nucleic Acids Res 41:W29-W33. http://dx.doi.org/10.1093/nar/gkt282.
5. Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL. 2008. NCBI blast: a better Web interface. Nucleic Acids Res 36: W5-W9. http://dx.doi.org/10.1093/nar/gkn201.
6. Benson DA, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. 2015. GenBank. Nucleic Acids Res 43:D30-D35. http://dx.doi.org/10.1093/nar/gku1216.
7. Rosario K, Dayaram A, Marinov M, Ware J, Kraberger S, Stainton D, Breitbart M, Varsani A. 2012. Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta). J Gen Virol 93:2668-2681. http://dx.doi.org/10.1099/vir.0.045948-0.
8. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797. http://dx.doi.org/10.1093/nar/gkh340.
9. Reuter G, Boros á, Delwart E, Pankovics P. 2014. Novel circular singlestrandedDNAvirus from turkey faeces. Arch Virol 159:2161-2164. http://dx.doi.org/10.1007/s00705-014-2025-3.
10. Sikorski A, Argüello-Astorga GR, Dayaram A, Dobson RCJ, Varsani A. 2013. Discovery of a novel circular single-stranded DNA virus from porcine faeces. Arch Virol 158:283-289. http://dx.doi.org/10.1007/s00705-012-1470-0.
11. Blinkova O, Victoria J, Li Y, Keele BF, Sanz C, Ndjango J-N, Peeters M, Travis D, Lonsdorf EV, Wilson ML, Pusey AE, Hahn BH, Delwart EL. 2010. Novel circularDNAviruses in stool samples of wild-living chimpanzees. J Gen Virol 91:74-86. http://dx.doi.org/10.1099/vir.0.015446-0.