GenBank

Nucleic Acids Research

Volumn 43, Issue D1, 2015, Pages D30-D35

  Benson, Dennis A ^a   Clark, Karen ^a   Karsch Mizrachi, Ilene ^a   Lipman, David J ^a   Ostell, James ^a   Sayers, Eric W ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CONTIG MAPPING; DATA BASE; DNA DATA BANK OF JAPAN; DNA SEQUENCE; ENVIRONMENTAL SAMPLE SEQUENCE; EUROPEAN NUCLEOTIDE ARCHIVE; GENBANK; GENOME; HIGH THROUGHPUT CDNA SEQUENCE; HIGH THROUGHPUT GENOMIC SEQUENCE; HUMAN; INFORMATION PROCESSING; INFORMATION RETRIEVAL; MEDLINE; NATIONAL CENTER FOR BIOTECHNOLOGY INFORMATION ENTREZ; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; SEQUENCE DATABASE; TAXONOMY; THIRD PARTY ANNOTATION; TRANSCRIPTOME SHOTGUN ASSEMBLY SEQUENCE; WHOLE GENOME SHOTGUN SEQUENCE; BACTERIUM; CLASSIFICATION; GENOMICS; INTERNET; NUCLEIC ACID DATABASE; SEQUENCE ANALYSIS;

BACTERIA; DATABASES, NUCLEIC ACID; GENOMICS; INTERNET; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, PROTEIN;

EID: 84941062033     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku1216     Document Type: Article

References (16)

1. Benson, D. A., Clark, K., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. and Sayers, E. W. (2014) GenBank. Nucleic Acids Res., 42, D32-D37.
2. Cochrane, G., Alako, B., Amid, C., Bower, L., Cerdeno-Tarraga, A., Cleland, I., Gibson, R., Goodgame, N., Jang, M., Kay, S. et al. (2013) Facing growth in the European Nucleotide Archive. Nucleic Acids Res., 41, D30-D35.
3. Kosuge, T., Mashima, J., Kodama, Y., Fujisawa, T., Kaminuma, E., Ogasawara, O., Okubo, K., Takagi, T. and Nakamura, Y. (2014) DDBJ progress report: a new submission system for leading to a correct annotation. Nucleic Acids Res., 42, D44-D49.
4. Nakamura, Y., Cochrane, G., Karsch-Mizrachi, I. and International Nucleotide Sequence Database, C. (2013) The International Nucleotide Sequence Database Collaboration. Nucleic Acids Res., 41, D21-D24.
5. NCBI Resource Coordinators. (2015) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., doi:10.1093/nar/gku1130.
6. Pruitt, K. D., Tatusova, T., Brown, G. R. and Maglott, D. R. (2012) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res., 40, D130-D135.
7. NCBI Resource Coordinators. (2014) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 42, D7-D17.
8. Federhen, S., Clark, K., Barrett, T., Parkinson, H., Ostell, J., Kodama, Y., Mashima, J., Nakamura, Y., Cochrane, G. and Karsch-Mizrachi, I. (2014) Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records. Stand. Genom. Sci., 9, 1275-1277.
9. Federhen, S. (2012) The NCBI Taxonomy database. Nucleic Acids Res., 40, D136-D143.
10. Kodama, Y., Shumway, M. and Leinonen, R. (2012) The Sequence Read Archive: explosive growth of sequencing data. Nucleic Acids Res., 40, D54-D56.
11. Kans, J. A. and Ouellette, B. F. F. (2001) Submitting DNA sequences to the databases. In: Baxevanis, AD and Ouellette, BFF (eds). Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins. John Wiley and Sons, Inc., NY, pp. 65-81.
12. Kawai, J., Shinagawa, A., Shibata, K., Yoshino, M., Itoh, M., Ishii, Y., Arakawa, T., Hara, A., Fukunishi, Y., Konno, H. et al. (2001) Functional annotation of a full-length mouse cDNA collection. Nature, 409, 685-690.
13. Barrett, T., Clark, K., Gevorgyan, R., Gorelenkov, V., Gribov, E., Karsch-Mizrachi, I., Kimelman, M., Pruitt, K. D., Resenchuk, S., Tatusova, T. et al. (2012) BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res., 40, D57-D63.
14. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
15. Zhang, Z., Schaffer, A. A., Miller, W., Madden, T. L., Lipman, D. J., Koonin, E. V. and Altschul, S. F. (1998) Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res., 26, 3986-3990.
16. Boratyn, G. M., Camacho, C., Cooper, P. S., Coulouris, G., Fong, A., Ma, N., Madden, T. L., Matten, W. T., McGinnis, S. D., Merezhuk, Y. et al. (2013) BLAST: a more efficient report with usability improvements. Nucleic Acids Res., 41, W29-W33.