메뉴 건너뛰기




Volumn 473, Issue 16, 2016, Pages 2463-2469

Proximity-dependent biotin labelling in yeast using the engineered ascorbate peroxidase APEX2

Author keywords

APEX2; Ascorbate peroxidase; Protein protein interaction; Proximity dependent biotinylation; Sorbitol; Yeast

Indexed keywords

ASCORBATE PEROXIDASE; BIOTIN; STREPTAVIDIN; TENIDAP; RECOMBINANT PROTEIN;

EID: 84993222812     PISSN: 02646021     EISSN: 14708728     Source Type: Journal    
DOI: 10.1042/BCJ20160106     Document Type: Article
Times cited : (44)

References (25)
  • 1
    • 84860270506 scopus 로고    scopus 로고
    • A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells
    • CrossRef PubMed
    • Roux, K.J., Kim, D.I., Raida, M. and Burke, B. (2012) A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells. J. Cell Biol. 196, 801-810 CrossRef PubMed.
    • (2012) J. Cell Biol. , vol.196 , pp. 801-810
    • Roux, K.J.1    Kim, D.I.2    Raida, M.3    Burke, B.4
  • 2
    • 84902573768 scopus 로고    scopus 로고
    • Probing nuclear pore complex architecture with proximity-dependent biotinylation
    • CrossRef PubMed
    • Kim, D.I., Birendra, K.C., Zhu, W., Motamedchaboki, K., Doye, V. and Roux, K.J. (2014) Probing nuclear pore complex architecture with proximity-dependent biotinylation. Proc. Natl. Acad. Sci. U.S.A. 111, E2453-E2461 CrossRef PubMed.
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. E2453-E2461
    • Kim, D.I.1    Birendra, K.C.2    Zhu, W.3    Motamedchaboki, K.4    Doye, V.5    Roux, K.J.6
  • 3
    • 84896544470 scopus 로고    scopus 로고
    • Proximity interactions among centrosome components identify regulators of centriole duplication
    • CrossRef PubMed
    • Firat-Karalar, E.N., Rauniyar, N., Yates 3rd, J.R. and Stearns, T. (2014) Proximity interactions among centrosome components identify regulators of centriole duplication. Curr. Biol. 24, 664-670 CrossRef PubMed.
    • (2014) Curr. Biol , vol.24 , pp. 664-670
    • Firat-Karalar, E.N.1    Rauniyar, N.2    Yates, J.R.3    Stearns, T.4
  • 4
    • 84874956967 scopus 로고    scopus 로고
    • Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging
    • CrossRef PubMed
    • Rhee, H.W., Zou, P., Udeshi, N.D., Martell, J.D., Mootha, V.K., Carr, S.A. and Ting, A.Y. (2013) Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging. Science 339, 1328-1331 CrossRef PubMed.
    • (2013) Science , vol.339 , pp. 1328-1331
    • Rhee, H.W.1    Zou, P.2    Udeshi, N.D.3    Martell, J.D.4    Mootha, V.K.5    Carr, S.A.6    Ting, A.Y.7
  • 5
    • 84907772320 scopus 로고    scopus 로고
    • Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging
    • CrossRef PubMed
    • Hung, V., Zou, P., Rhee, H.W., Udeshi, N.D., Cracan, V., Svinkina, T., Carr, S.A., Mootha, V.K. and Ting, A.Y. (2014) Proteomic mapping of the human mitochondrial intermembrane space in live cells via ratiometric APEX tagging. Mol. Cell 55, 332-341 CrossRef PubMed.
    • (2014) Mol. Cell , vol.55 , pp. 332-341
    • Hung, V.1    Zou, P.2    Rhee, H.W.3    Udeshi, N.D.4    Cracan, V.5    Svinkina, T.6    Carr, S.A.7    Mootha, V.K.8    Ting, A.Y.9
  • 7
    • 84942853643 scopus 로고    scopus 로고
    • Proteomic mapping of ER-PM junctions identifies STIMATE as a regulator of Ca(2+) influx
    • CrossRef PubMed
    • Jing, J., He, L., Sun, A., Quintana, A., Ding, Y., Ma, G., Tan, P., Liang, X., Zheng, X., Chen, L. et al. (2015) Proteomic mapping of ER-PM junctions identifies STIMATE as a regulator of Ca(2+) influx. Nat. Cell Biol. 17, 1339-1347 CrossRef PubMed.
    • (2015) Nat. Cell Biol. , vol.17 , pp. 1339-1347
    • Jing, J.1    He, L.2    Sun, A.3    Quintana, A.4    Ding, Y.5    Ma, G.6    Tan, P.7    Liang, X.8    Zheng, X.9    Chen, L.10
  • 9
    • 84959450407 scopus 로고    scopus 로고
    • Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2
    • CrossRef PubMed
    • Hung, V., Udeshi, N.D., Lam, S.S., Loh, K.H., Cox, K.J., Pedram, K., Carr, S.A. and Ting, A.Y. (2016) Spatially resolved proteomic mapping in living cells with the engineered peroxidase APEX2. Nat. Protoc. 11, 456-475 CrossRef PubMed.
    • (2016) Nat. Protoc. , vol.11 , pp. 456-475
    • Hung, V.1    Udeshi, N.D.2    Lam, S.S.3    Loh, K.H.4    Cox, K.J.5    Pedram, K.6    Carr, S.A.7    Ting, A.Y.8
  • 10
    • 84966676788 scopus 로고    scopus 로고
    • APEX fingerprinting reveals the subcellular localization of proteins of interest
    • CrossRef PubMed
    • Lee, S.Y., Kang, M.G., Park, J.S., Lee, G., Ting, A.Y. and Rhee, H.W. (2016) APEX fingerprinting reveals the subcellular localization of proteins of interest. Cell Rep. 15, 1837-1847 CrossRef PubMed.
    • (2016) Cell Rep , vol.15 , pp. 1837-1847
    • Lee, S.Y.1    Kang, M.G.2    Park, J.S.3    Lee, G.4    Ting, A.Y.5    Rhee, H.W.6
  • 11
    • 81255197643 scopus 로고    scopus 로고
    • Yeast: An experimental organism for 21st century biology
    • CrossRef PubMed
    • Botstein, D. and Fink, G.R. (2011) Yeast: An experimental organism for 21st Century biology. Genetics 189, 695-704 CrossRef PubMed.
    • (2011) Genetics , vol.189 , pp. 695-704
    • Botstein, D.1    Fink, G.R.2
  • 12
    • 84855288996 scopus 로고    scopus 로고
    • Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the golgi Dsc, E3 ligase
    • CrossRef PubMed
    • Stewart, E.V., Lloyd, S.J., Burg, J.S., Nwosu, C.C., Lintner, R.E., Daza, R., Russ, C., Ponchner, K., Nusbaum, C. and Espenshade, P.J. (2012) Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase. J. Biol. Chem. 287, 672-681 CrossRef PubMed.
    • (2012) J. Biol. Chem , vol.287 , pp. 672-681
    • Stewart, E.V.1    Lloyd, S.J.2    Burg, J.S.3    Nwosu, C.C.4    Lintner, R.E.5    Daza, R.6    Russ, C.7    Ponchner, K.8    Nusbaum, C.9    Espenshade, P.J.10
  • 13
    • 0026025891 scopus 로고
    • Molecular genetic analysis of fission yeast schizosaccharomyces pombe
    • CrossRef PubMed
    • Moreno, S., Klar, A. and Nurse, P. (1991) Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194, 795-823 CrossRef PubMed.
    • (1991) Methods Enzymol , vol.194 , pp. 795-823
    • Moreno, S.1    Klar, A.2    Nurse, P.3
  • 15
    • 0642333690 scopus 로고    scopus 로고
    • High osmotic stress improves electro-Transformation efficiency of fission yeast
    • CrossRef PubMed
    • Suga, M., Kusanagi, I. and Hatakeyama, T. (2003) High osmotic stress improves electro-Transformation efficiency of fission yeast. FEMS Microbiol. Lett. 225, 235-239 CrossRef PubMed.
    • (2003) FEMS Microbiol. Lett , vol.225 , pp. 235-239
    • Suga, M.1    Kusanagi, I.2    Hatakeyama, T.3
  • 16
    • 0029839311 scopus 로고    scopus 로고
    • Molecular, functional and evolutionary characterization of the gene encoding HMG-CoA reductase in the fission yeast, schizosaccharomyces pombe
    • CrossRef PubMed
    • Lum, P.Y., Edwards, S. and Wright, R. (1996) Molecular, functional and evolutionary characterization of the gene encoding HMG-CoA reductase in the fission yeast, Schizosaccharomyces pombe. Yeast 12, 1107-1124 CrossRef PubMed.
    • (1996) Yeast , vol.12 , pp. 1107-1124
    • Lum, P.Y.1    Edwards, S.2    Wright, R.3
  • 17
    • 84940886317 scopus 로고    scopus 로고
    • Cell wall remodeling enzymes modulate fungal cell wall elasticity and osmotic stress resistance
    • CrossRef PubMed
    • Ene, I.V., Walker, L.A., Schiavone, M., Lee, K.K., Martin-Yken, H., Dague, E., Gow, N.A., Munro, C.A. and Brown, A.J. (2015) Cell wall remodeling enzymes modulate fungal cell wall elasticity and osmotic stress resistance. MBio 6, e00986 CrossRef PubMed.
    • (2015) MBio , vol.6 , pp. e00986
    • Ene, I.V.1    Walker, L.A.2    Schiavone, M.3    Lee, K.K.4    Martin-Yken, H.5    Dague, E.6    Gow, N.A.7    Munro, C.A.8    Brown, A.J.9
  • 18
    • 0034911880 scopus 로고    scopus 로고
    • Characterization of a schizosaccharomyces pombe mutant deficient in UDP-galactose transport activity
    • CrossRef PubMed
    • Tanaka, N., Konomi, M., Osumi, M. and Takegawa, K. (2001) Characterization of a Schizosaccharomyces pombe mutant deficient in UDP-galactose transport activity. Yeast 18, 903-914 CrossRef PubMed.
    • (2001) Yeast , vol.18 , pp. 903-914
    • Tanaka, N.1    Konomi, M.2    Osumi, M.3    Takegawa, K.4
  • 19
    • 0036840502 scopus 로고    scopus 로고
    • High osmolarity extends life span in saccharomyces cerevisiae by a mechanism related to calorie restriction
    • CrossRef PubMed
    • Kaeberlein, M., Andalis, A.A., Fink, G.R. and Guarente, L. (2002) High osmolarity extends life span in Saccharomyces cerevisiae by a mechanism related to calorie restriction. Mol. Cell. Biol. 22, 8056-8066 CrossRef PubMed.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 8056-8066
    • Kaeberlein, M.1    Andalis, A.A.2    Fink, G.R.3    Guarente, L.4
  • 21
    • 33645120423 scopus 로고    scopus 로고
    • Cell wall assembly in saccharomyces cerevisiae
    • CrossRef PubMed
    • Lesage, G. and Bussey, H. (2006) Cell wall assembly in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 70, 317-343 CrossRef PubMed.
    • (2006) Microbiol. Mol. Biol., Rev. , vol.70 , pp. 317-343
    • Lesage, G.1    Bussey, H.2
  • 22
    • 11144279156 scopus 로고    scopus 로고
    • A glucanase-driven fractionation allows redefinition of schizosaccharomyces pombe cell wall composition and structure: Assignment of diglucan
    • CrossRef PubMed
    • Magnelli, P.E., Cipollo, J.F. and Robbins, P.W. (2005) A glucanase-driven fractionation allows redefinition of Schizosaccharomyces pombe cell wall composition and structure: Assignment of diglucan. Anal. Biochem. 336, 202-212 CrossRef PubMed.
    • (2005) Anal. Biochem , vol.336 , pp. 202-212
    • Magnelli, P.E.1    Cipollo, J.F.2    Robbins, P.W.3
  • 23
    • 67649634849 scopus 로고    scopus 로고
    • Defining the human deubiquitinating enzyme interaction landscape
    • CrossRef PubMed
    • Sowa, M.E., Bennett, E.J., Gygi, S.P. and Harper, J.W. (2009) Defining the human deubiquitinating enzyme interaction landscape. Cell 138, 389-403 CrossRef PubMed.
    • (2009) Cell , vol.138 , pp. 389-403
    • Sowa, M.E.1    Bennett, E.J.2    Gygi, S.P.3    Harper, J.W.4
  • 24
    • 84873724816 scopus 로고    scopus 로고
    • Structure and function of biotin-dependent carboxylases
    • CrossRef PubMed
    • Tong, L. (2013) Structure and function of biotin-dependent carboxylases. Cell. Mol. Life Sci. 70, 863-891 CrossRef PubMed.
    • (2013) Cell. Mol. Life, Sci. , vol.70 , pp. 863-891
    • Tong, L.1
  • 25
    • 0020998506 scopus 로고
    • Import of proteins into mitochondria: A 70 kilodalton outer membrane protein with a large carboxy-Terminal deletion is still transported to the outer membrane
    • PubMed
    • Riezman, H., Hase, T., van Loon, A.P., Grivell, L.A., Suda, K. and Schatz, G. (1983) Import of proteins into mitochondria: A 70 kilodalton outer membrane protein with a large carboxy-Terminal deletion is still transported to the outer membrane. EMBO J. 2, 2161-2168 PubMed.
    • (1983) EMBO J. , vol.2 , pp. 2161-2168
    • Riezman, H.1    Hase, T.2    Van Loon, A.P.3    Grivell, L.A.4    Suda, K.5    Schatz, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.