Nuclear actin-related proteins take shape

BioArchitecture

Volumn 1, Issue 4, 2011, Pages 192-195

  Fenn, Sebastian ^a   Gerhold, Christian B ^a   Hopfner, Karl Peter ^a  

^a UNIVERSITY OF MUNICH   (Germany)

Author keywords

Actin related proteins; Chromatin remodeling; INO80 complex; Nuclear actin

Indexed keywords

ACTIN; ACTIN RELATED PROTEIN; ACTIN RELATED PROTEIN 4; ACTIN RELATED PROTEIN 8; PROTEIN INO80; SCAFFOLD PROTEIN; UNCLASSIFIED DRUG;

ACTIN POLYMERIZATION; ARTICLE; CELL NUCLEUS; CHROMATIN; MOLECULAR DYNAMICS; NONHUMAN; PROTEIN FUNCTION; PROTEIN MODIFICATION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; PROTEIN SYNTHESIS REGULATION; SACCHAROMYCES CEREVISIAE;

EID: 84992268857     PISSN: 19490992     EISSN: 1949100X     Source Type: Journal    
DOI: 10.4161/bioa.1.4.17643     Document Type: Article

References (37)

1. Clapier CR, Cairns BR. The biology of chromatin remodeling complexes. Annu Rev Biochem 2009; 78:273-304.
2. Shen X, Mizuguchi G, Hamiche A, Wu C. A chromatin remodelling complex involved in transcription and DNA processing. Nature 2000; 406:541-4.
3. Mizuguchi G, Shen X, Landry J, Wu WH, Sen S, Wu C. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 2004; 303:343-8.
4. Cairns BR, Lorch Y, Li Y, Zhang M, Lacomis L, Erdjument-Bromage H, et al. RSC, an essential, abundant chromatin-remodeling complex. Cell 1996; 87:1249-60.
5. Cairns BR, Erdjument-Bromage H, Tempst P, Winston F, Kornberg RD. Two actin-related proteins are shared functional components of the chromatinremodeling complexes RSC and SWI/SNF. Mol Cell 1998; 2:639-51.
6. Eberharter A, John S, Grant PA, Utley RT, Workman JL. Identification and analysis of yeast nucleosomal histone acetyltransferase complexes. Methods 1998; 15:315-21.
7. Szerlong H, Hinata K, Viswanathan R, Erdjument-Bromage H, Tempst P, Cairns BR. The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases. Nat Struct Mol Biol 2008; 15:469-76.
8. Galarneau L, Nourani A, Boudreault AA, Zhang Y, Heliot L, Allard S, et al. Multiple links between the NuA4 histone acetyltransferase complex and epigenetic control of transcription. Mol Cell 2000; 5:927-37.
9. Harata M, Oma Y, Mizuno S, Jiang YW, Stillman DJ, Wintersberger U. The nuclear actin-related protein of Saccharomyces cerevisiae, Act3p/Arp4, interacts with core histones. Mol Biol Cell 1999; 10:2595-605.
10. Shen X, Ranallo R, Choi E, Wu C. Involvement of actin-related proteins in ATP-dependent chromatin remodeling. Mol Cell 2003; 12:147-55.
11. Dion V, Shimada K, Gasser SM. Actin-related proteins in the nucleus: life beyond chromatin remodelers. Curr Opin Cell Biol 2010; 22:1-9.
12. Kashiwaba S, Kitahashi K, Watanabe T, Onoda F, Ohtsu M, Murakami Y. The mammalian INO80 complex is recruited to DNA damage sites in an ARP8 dependent manner. Biochem Biophys Res Commun 402:619-25.
13. Gieni RS, Hendzel MJ. Actin dynamics and functions in the interphase nucleus: moving toward an understanding of nuclear polymeric actin. Biochem Cell Biol 2009; 87:283-306.
14. Chuang CH, Carpenter AE, Fuchsova B, Johnson T, de Lanerolle P, Belmont AS. Long-range directional movement of an interphase chromosome site. Curr Biol 2006; 16:825-31.
15. Franke WW. Actin's many actions start at the genes. Nat Cell Biol 2004; 6:1013-4.
16. McDonald D, Carrero G, Andrin C, de Vries G, Hendzel MJ. Nucleoplasmic beta-actin exists in a dynamic equilibrium between low-mobility polymeric species and rapidly diffusing populations. J Cell Biol 2006; 172:541-52.
17. Ye J, Zhao J, Hoffmann-Rohrer U, Grummt I. Nuclear myosin I acts in concert with polymeric actin to drive RNA polymerase I transcription. Genes Dev 2008; 22:322-30.
18. Nunez E, Kwon YS, Hutt KR, Hu Q, Cardamone MD, Ohgi KA, et al. Nuclear receptor-enhanced transcription requires motor- and LSD1-dependent gene networking in interchromatin granules. Cell 2008; 132:996-1010.
19. Dundr M, Ospina JK, Sung MH, John S, Upender M, Ried T, et al. Actin-dependent intranuclear repositioning of an active gene locus in vivo. J Cell Biol 2007; 179:1095-103.
20. Fenn S, Breitsprecher D, Gerhold CB, Witte G, Faix J, Hopfner KP. Structural biochemistry of nuclear actin-related proteins 4 and 8 reveals their interaction with actin. EMBO J 2011; 30:2153-66.
21. Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC. Atomic structure of the actin:DNase I complex. Nature 1990; 347:37-44.
22. Vorobiev S, Strokopytov B, Drubin DG, Frieden C, Ono S, Condeelis J, et al. The structure of nonvertebrate actin: implications for the ATP hydrolytic mechanism. Proc Natl Acad Sci USA 2003; 100:5760-5.
23. Martin AC, Welch MD, Drubin DG. Arp2/3 ATP hydrolysis-catalysed branch dissociation is critical for endocytic force generation. Nat Cell Biol 2006; 8:826-33.
24. Iwasa M, Maeda K, Narita A, Maeda Y, Oda T. Dual roles of Gln137 of actin revealed by recombinant human cardiac muscle alpha-actin mutants. J Biol Chem 2008; 283:21045-53.
25. Pollard TD. Regulation of actin filament assembly by Arp2/3 complex and formins. Annu Rev Biophys Biomol Struct 2007; 36:451-77.
26. Witke W. The role of profilin complexes in cell motility and other cellular processes. Trends Cell Biol 2004; 14:461-9.
27. Bubb MR, Govindasamy L, Yarmola EG, Vorobiev SM, Almo SC, Somasundaram T, et al. Polylysine induces an antiparallel actin dimer that nucleates filament assembly: crystal structure at 3.5-A resolution. J Biol Chem 2002; 277:20999-1006.
28. Reutzel R, Yoshioka C, Govindasamy L, Yarmola EG, Agbandje-McKenna M, Bubb MR, McKenna R. Actin crystal dynamics: structural implications for F-actin nucleation, polymerization and branching mediated by the anti-parallel dimer. J Struct Biol 2004; 146:291-301.
29. Sunada R, Gorzer I, Oma Y, Yoshida T, Suka N, Wintersberger U, Harata M. The nuclear actin-related protein Act3p/Arp4p is involved in the dynamics of chromatin-modulating complexes. Yeast 2005; 22:753-68.
30. Aoyama N, Oka A, Kitayama K, Kurumizaka H, Harata M. The actin-related protein hArp8 accumulates on the mitotic chromosomes and functions in chromosome alignment. Exp Cell Res 2008; 314:859-68.
31. Hibbs MA, Hess DC, Myers CL, Huttenhower C, Li K, Troyanskaya OG. Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinformatics 2007; 23:2692-9.
32. Watanabe M, Watanabe D, Nogami S, Morishita S, Ohya Y. Comprehensive and quantitative analysis of yeast deletion mutants defective in apical and isotropic bud growth. Curr Genet 2009; 55:365-80.
33. Rando OJ, Zhao K, Janmey P, Crabtree GR. Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex. Proc Natl Acad Sci USA 2002; 99:2824-9.
34. Blanchoin L, Pollard TD. Hydrolysis of ATP by polymerized actin depends on the bound divalent cation but not profilin. Biochemistry 2002; 41:597-602.
35. Oda T, Iwasa M, Aihara T, Maeda Y, Narita A. The nature of the globular-to fibrous-actin transition. Nature 2009; 457:441-5.
36. Fujii T, Iwane AH, Yanagida T, Namba K. Direct visualization of secondary structures of F-actin by electron cryomicroscopy. Nature 467:724-8.
37. Kast DJ, Dominguez R. Arp you ready for actin in the nucleus? EMBO J 2011; 30:2097-8.