메뉴 건너뛰기




Volumn 32, Issue 18, 2016, Pages 2858-2860

CAGEd-oPOSSUM: Motif enrichment analysis from CAGE-derived TSSs

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 84992206533     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btw337     Document Type: Article
Times cited : (10)

References (12)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The gene ontology consortium
    • Ashburner, M. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 2
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell, 38, 576-589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 3
    • 79959916374 scopus 로고    scopus 로고
    • Unamplified cap analysis of gene expression on a single-molecule sequencer
    • Kanamori-Katayama, M. et al. (2011) Unamplified cap analysis of gene expression on a single-molecule sequencer. Genome Res., 21, 1150-1159.
    • (2011) Genome Res. , vol.21 , pp. 1150-1159
    • Kanamori-Katayama, M.1
  • 4
    • 84883191963 scopus 로고    scopus 로고
    • OPOSSUM-3: Advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets
    • Kwon, A.T. et al. (2012) oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets. G3-Genesj Genomesj Genetics, 2, 987-1002.
    • (2012) G3-Genesj Genomesj Genetics , vol.2 , pp. 987-1002
    • Kwon, A.T.1
  • 5
    • 84939209563 scopus 로고    scopus 로고
    • Gateways to the FANTOM5 promoter level mammalian expression atlas
    • Lizio, M. et al. (2015) Gateways to the FANTOM5 promoter level mammalian expression atlas. Genome Biol., 16, 22.
    • (2015) Genome Biol. , vol.16 , pp. 22
    • Lizio, M.1
  • 6
    • 84976884426 scopus 로고    scopus 로고
    • JASPAR 2016: A major expansion and update of the open-access database of transcription factor binding profiles
    • Mathelier, A. et al. (2016) JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res., 44, D110-D115.
    • (2016) Nucleic Acids Res. , vol.44 , pp. D110-D115
    • Mathelier, A.1
  • 7
    • 84979857821 scopus 로고    scopus 로고
    • RSAT 2015: Regulatory sequence analysis tools
    • Medina-Rivera, A. et al. (2015) RSAT 2015: regulatory sequence analysis tools. Nucleic Acids Res., 43, W50-W56.
    • (2015) Nucleic Acids Res. , vol.43 , pp. W50-W56
    • Medina-Rivera, A.1
  • 8
    • 84856316836 scopus 로고    scopus 로고
    • Uberon, an integrative multi-species anatomy ontology
    • Mungall, C.J. et al. (2012) Uberon, an integrative multi-species anatomy ontology. Genome Biol., 13, R5.
    • (2012) Genome Biol. , vol.13 , pp. R5
    • Mungall, C.J.1
  • 9
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • (Oxford, England)
    • Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics (Oxford, England), 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 10
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
    • Smith, B. et al. (2007) The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol., 25, 1251-1255.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1251-1255
    • Smith, B.1
  • 11
    • 84885841612 scopus 로고    scopus 로고
    • Modeling the specificity of protein-DNA interactions
    • Stormo, G.D. (2013) Modeling the specificity of protein-DNA interactions. Quant. Biol., 1, 115-130.
    • (2013) Quant. Biol. , vol.1 , pp. 115-130
    • Stormo, G.D.1
  • 12
    • 84897406127 scopus 로고    scopus 로고
    • A promoter-level mammalian expression atlas
    • The FANTOM Consortium. (2014) A promoter-level mammalian expression atlas. Nature, 507, 462-470.
    • (2014) Nature , vol.507 , pp. 462-470


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.