-
1
-
-
0034431467
-
Analysis of gene-specific DNA damage and repair using quantitative polymerase chain reaction
-
Ayala-Torres, S, Chen, Y, Svoboda, T, Rosenblatt, J, and Van Houten, B. 2000. Analysis of gene-specific DNA damage and repair using quantitative polymerase chain reaction. Methods 22:135-147.
-
(2000)
Methods
, vol.22
, pp. 135-147
-
-
Ayala-Torres, S.1
Chen, Y.2
Svoboda, T.3
Rosenblatt, J.4
Van Houten, B.5
-
2
-
-
71549131286
-
Nucleotide excision repair genes are expressed at low levels and are not detectably inducible in Caenorhabditis elegans somatic tissues, but their function is required for normal adult life after UVC exposure
-
Boyd, W.A, Crocker, T.L, Rodriguez, A.M, Leung, M.C.K, Wade Lehmann, D, Freedman, J.H, Van Houten, B, and Meyer, J.N. 2010. Nucleotide excision repair genes are expressed at low levels and are not detectably inducible in Caenorhabditis elegans somatic tissues, but their function is required for normal adult life after UVC exposure. Mutat. Res./Fundam. Mol. Mech. Mutagen. 683:57-67. doi: 10.1016/j.mrfmmm.2009.10.008.
-
(2010)
Mutat. Res./Fundam. Mol. Mech. Mutagen.
, vol.683
, pp. 57-67
-
-
Boyd, W.A.1
Crocker, T.L.2
Rodriguez, A.M.3
Leung, M.C.K.4
Wade Lehmann, D.5
Freedman, J.H.6
Van Houten, B.7
Meyer, J.N.8
-
3
-
-
64549151315
-
Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development
-
Bratic, I, Hench, J, Henriksson, J, Antebi, A, Burglin, T.R, and Trifunovic, A. 2009. Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development. Nucleic Acids Res. 37:1817-1828. doi: 10.1093/nar/gkp018.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1817-1828
-
-
Bratic, I.1
Hench, J.2
Henriksson, J.3
Antebi, A.4
Burglin, T.R.5
Trifunovic, A.6
-
4
-
-
84155165077
-
Aging increases mitochondrial DNA damage and oxidative stress in liver of rhesus monkeys
-
Castro, M.d.R, Suarez, E, Kraiselburd, E, Isidro, A, Paz, J, Ferder, L, and Ayala-Torres, S. 2012. Aging increases mitochondrial DNA damage and oxidative stress in liver of rhesus monkeys. Exp. Gerontol. 47:29-37. doi: 10.1016/j.exger.2011.10.002.
-
(2012)
Exp. Gerontol.
, vol.47
, pp. 29-37
-
-
Castro, M.1
Suarez, E.2
Kraiselburd, E.3
Isidro, A.4
Paz, J.5
Ferder, L.6
Ayala-Torres, S.7
-
6
-
-
84905031802
-
Developmental toxicity and DNA damage from exposure to parking lot runoff retention pond samples in the Japanese medaka (Oryzias latipes)
-
Colton, M.D, Kwok, K.W.H, Brandon, J.A, Warren, I.H, Ryde, I.T, Cooper, E.M, Hinton, D.E, Rittschof, D, and Meyer, J.N. 2014. Developmental toxicity and DNA damage from exposure to parking lot runoff retention pond samples in the Japanese medaka (Oryzias latipes). Mar. Environ. Res. 99:117-124. doi: 10.1016/j.marenvres.2014.04.007.
-
(2014)
Mar. Environ. Res.
, vol.99
, pp. 117-124
-
-
Colton, M.D.1
Kwok, K.W.H.2
Brandon, J.A.3
Warren, I.H.4
Ryde, I.T.5
Cooper, E.M.6
Hinton, D.E.7
Rittschof, D.8
Meyer, J.N.9
-
7
-
-
83755205842
-
Defects in mitochondrial DNA replication and human disease
-
Copeland, W.C. 2012. Defects in mitochondrial DNA replication and human disease. Crit. Rev. Biochem. Mol. Biol. 47:64-74. doi: 10.3109/10409238.2011.632763.
-
(2012)
Crit. Rev. Biochem. Mol. Biol.
, vol.47
, pp. 64-74
-
-
Copeland, W.C.1
-
8
-
-
84859421209
-
A mitochondrial etiology of Alzheimer and Parkinson disease
-
Coskun, P, Wyrembak, J, Schriner, S.E, Chen, H.-W, Marciniack, C, LaFerla, F, and Wallace, D.C. 2012. A mitochondrial etiology of Alzheimer and Parkinson disease. Biochim. Biophys. Acta 1820:553-564. doi: 10.1016/j.bbagen.2011.08.008.
-
(2012)
Biochim. Biophys. Acta
, vol.1820
, pp. 553-564
-
-
Coskun, P.1
Wyrembak, J.2
Schriner, S.E.3
Chen, H.-W.4
Marciniack, C.5
LaFerla, F.6
Wallace, D.C.7
-
9
-
-
84868570176
-
Analysis of DNA damage and repair in nuclear and mitochondrial DNA of animal cells using quantitative PCR
-
Furda, A.M, Bess, A.S, Meyer, J.N, and Van Houten, B. 2012. Analysis of DNA damage and repair in nuclear and mitochondrial DNA of animal cells using quantitative PCR. Methods Mol. Biol. 920:111-132. doi: 10.1007/978-1-61779-998-3_9.
-
(2012)
Methods Mol. Biol.
, vol.920
, pp. 111-132
-
-
Furda, A.M.1
Bess, A.S.2
Meyer, J.N.3
Van Houten, B.4
-
10
-
-
84905570715
-
Quantitative PCR-Based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells
-
P.Keohavong, S.G.Grant, eds.), Humana Press, Totowa, N.J
-
Furda, A, Santos, J, Meyer, J, and Van Houten, B. 2014. Quantitative PCR-Based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells. In Molecular Toxicology Protocols, Vol. 1105 (P. Keohavong and S.G. Grant, eds.) pp. 419-437. Humana Press, Totowa, N.J.
-
(2014)
Molecular Toxicology Protocols
, pp. 1105-1437
-
-
Furda, A.1
Santos, J.2
Meyer, J.3
Van Houten, B.4
-
11
-
-
77955282704
-
The QPCR assay for analysis of mitochondrial DNA damage, repair, and relative copy number
-
Hunter, S.E, Jung, D, Di Giulio, R.T, and Meyer, J.N. 2010. The QPCR assay for analysis of mitochondrial DNA damage, repair, and relative copy number. Methods 51:444-451. doi: 10.1016/j.ymeth.2010.01.033.
-
(2010)
Methods
, vol.51
, pp. 444-451
-
-
Hunter, S.E.1
Jung, D.2
Di Giulio, R.T.3
Meyer, J.N.4
-
12
-
-
63749105211
-
The long amplicon quantitative PCR for DNA damage assay as a sensitive method of assessing DNA damage in the environmental model, Atlantic killifish (Fundulus heteroclitus)
-
Jung, D, Cho, Y, Meyer, J.N, and Di Giulio, R.T. 2009. The long amplicon quantitative PCR for DNA damage assay as a sensitive method of assessing DNA damage in the environmental model, Atlantic killifish (Fundulus heteroclitus). Comp. Biochem. Physiol. C Toxicol. Pharmacol. 149:182-186. doi: 10.1016/j.cbpc.2008.07.007.
-
(2009)
Comp. Biochem. Physiol. C Toxicol. Pharmacol.
, vol.149
, pp. 182-186
-
-
Jung, D.1
Cho, Y.2
Meyer, J.N.3
Di Giulio, R.T.4
-
13
-
-
0026708608
-
Analysis of DNA damage and repair in murine leukemia L1210 cells using a quantitative polymerase chain reaction assay
-
Kalinowski, D.P, Illenye, S, and Van Houten, B. 1992. Analysis of DNA damage and repair in murine leukemia L1210 cells using a quantitative polymerase chain reaction assay. Nucleic Acids Res. 20:3485-3494. doi: 10.1093/nar/20.13.3485.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 3485-3494
-
-
Kalinowski, D.P.1
Illenye, S.2
Van Houten, B.3
-
14
-
-
84863754572
-
Enzymatic amplification of DNA by PCR: Standard procedures and optimization
-
Kramer, M. F. and Coen, D. M. 2000. Enzymatic amplification of DNA by PCR: Standard procedures and optimization. Curr. Protoc. Toxicol. 3:3C:A.3C.1–A.3C.14. doi: 10.1002/0471140856.txa03cs03.
-
(2000)
Curr. Protoc. Toxicol.
, vol.3
, Issue.3C
, pp. A.3C.1-A.3C.14
-
-
Kramer, M.F.1
Coen, D.M.2
-
15
-
-
84922426330
-
Changes in DNA damage, molecular integrity, and copy number for plastid DNA and mitochondrial DNA during maize development
-
Kumar, R.A, Oldenburg, D.J, and Bendich, A.J. 2014. Changes in DNA damage, molecular integrity, and copy number for plastid DNA and mitochondrial DNA during maize development. J. Exp. Bot. 65:6425-6439. doi: 10.1093/jxb/eru359.
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 6425-6439
-
-
Kumar, R.A.1
Oldenburg, D.J.2
Bendich, A.J.3
-
16
-
-
0026493929
-
Repair of mitochondrial DNA after various types of DNA damage in Chinese hamster ovary cells
-
LeDoux, S.P, Wilson, G.L, Beecham, E.J, Stevnsner, T, Wassermann, K, and Bohr, V.A. 1992. Repair of mitochondrial DNA after various types of DNA damage in Chinese hamster ovary cells. Carcinogenesis 13:1967-1973. doi: 10.1093/carcin/13.11.1967.
-
(1992)
Carcinogenesis
, vol.13
, pp. 1967-1973
-
-
LeDoux, S.P.1
Wilson, G.L.2
Beecham, E.J.3
Stevnsner, T.4
Wassermann, K.5
Bohr, V.A.6
-
17
-
-
84879826727
-
Effects of early life exposure to ultraviolet C radiation on mitochondrial DNA content, transcription, ATP production, and oxygen consumption in developing Caenorhabditis elegans
-
Leung, M, Rooney, J, Ryde, I, Bernal, A, Bess, A, Crocker, T, Ji, A, and Meyer, J. 2013. Effects of early life exposure to ultraviolet C radiation on mitochondrial DNA content, transcription, ATP production, and oxygen consumption in developing Caenorhabditis elegans. BMC Pharmacol. Toxicol. 14:9. doi: 10.1186/2050-6511-14-9.
-
(2013)
BMC Pharmacol. Toxicol.
, vol.14
, pp. 9
-
-
Leung, M.1
Rooney, J.2
Ryde, I.3
Bernal, A.4
Bess, A.5
Crocker, T.6
Ji, A.7
Meyer, J.8
-
18
-
-
77952236020
-
QPCR: A tool for analysis of mitochondrial and nuclear DNA damage in ecotoxicology
-
Meyer, J.N. 2010. QPCR: A tool for analysis of mitochondrial and nuclear DNA damage in ecotoxicology. Ecotoxicology 19:804-811. doi: 10.1007/s10646-009-0457-4.
-
(2010)
Ecotoxicology
, vol.19
, pp. 804-811
-
-
Meyer, J.N.1
-
19
-
-
34548853161
-
Decline of nucleotide excision repair capacity in aging Caenorhabditis elegans
-
Meyer, J.N, Boyd, W.A, Azzam, G.A, Haugen, A.C, Freedman, J.H, and Van Houten, B. 2007. Decline of nucleotide excision repair capacity in aging Caenorhabditis elegans. Genome biology 8:R70. doi: 10.1186/gb-2007-8-5-r70.
-
(2007)
Genome biology
, vol.8
, pp. R70
-
-
Meyer, J.N.1
Boyd, W.A.2
Azzam, G.A.3
Haugen, A.C.4
Freedman, J.H.5
Van Houten, B.6
-
20
-
-
84880312418
-
Mitochondria as a target of environmental toxicants
-
Meyer, J.N, Leung, M.C.K, Rooney, J.P, Sendoel, A, Hengartner, M.O, Kisby, G.E, and Bess, A.S. 2013. Mitochondria as a target of environmental toxicants. Toxicol. Sci. 134:1-17. doi: 10.1093/toxsci/kft102.
-
(2013)
Toxicol. Sci.
, vol.134
, pp. 1-17
-
-
Meyer, J.N.1
Leung, M.C.K.2
Rooney, J.P.3
Sendoel, A.4
Hengartner, M.O.5
Kisby, G.E.6
Bess, A.S.7
-
21
-
-
0020026483
-
Preferential attack of mitochondrial DNA by aflatoxin B1 during hepatocarcinogenesis
-
Niranjan, B, Bhat, N, and Avadhani, N. 1982. Preferential attack of mitochondrial DNA by aflatoxin B1 during hepatocarcinogenesis. Science 215:73-75. doi: 10.1126/science.6797067.
-
(1982)
Science
, vol.215
, pp. 73-75
-
-
Niranjan, B.1
Bhat, N.2
Avadhani, N.3
-
22
-
-
0025877161
-
Measurement of the sequence specificity of covalent DNA modification by antineoplastic agents using Taq DNA polymerase
-
Ponti, M, Forrow, S.M, Souhami, R.L, D'Incalci, M, and Hartley, J.A. 1991. Measurement of the sequence specificity of covalent DNA modification by antineoplastic agents using Taq DNA polymerase. Nucleic Acids Res. 19:2929-2933. doi: 10.1093/nar/19.11.2929.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 2929-2933
-
-
Ponti, M.1
Forrow, S.M.2
Souhami, R.L.3
D'Incalci, M.4
Hartley, J.A.5
-
23
-
-
84955076671
-
PCR-based determination of mitochondrial DNA copy number in multiple species
-
C.M.Palmeira, A.P.Rolo, eds.), Springer, New York
-
Rooney, J, Ryde, I, Sanders, L, Howlett, E.H, Colton, M, Germ, K, Mayer, G, Greenamyre, J.T, and Meyer, J. 2015. PCR-based determination of mitochondrial DNA copy number in multiple species. In Mitochondrial Regulation, Vol. 1241 (C.M. Palmeira and A.P. Rolo, eds.) pp. 23-38. Springer, New York.
-
(2015)
Mitochondrial Regulation
, vol.1241
, pp. 23-38
-
-
Rooney, J.1
Ryde, I.2
Sanders, L.3
Howlett, E.H.4
Colton, M.5
Germ, K.6
Mayer, G.7
Greenamyre, J.T.8
Meyer, J.9
-
24
-
-
0004136246
-
-
3rd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y
-
Sambrook, J. and Russell, D.W. 2001. Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(2001)
Molecular Cloning : A Laboratory Manual
-
-
Sambrook, J.1
Russell, D.W.2
-
25
-
-
33744721699
-
Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells
-
Santos, J.H, Meyer, J.N, Mandavilli, B.S, and Van Houten, B. 2006. Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells. Methods Mol. Biol. 314:183-199. doi: 10.1385/1-59259-973-7:183.
-
(2006)
Methods Mol. Biol.
, vol.314
, pp. 183-199
-
-
Santos, J.H.1
Meyer, J.N.2
Mandavilli, B.S.3
Van Houten, B.4
-
26
-
-
84922800677
-
Protecting the mitochondrial powerhouse
-
Scheibye-Knudsen, M, Fang, E.F, Croteau, D.L, Wilson Iii, D.M, and Bohr, V.A. 2015. Protecting the mitochondrial powerhouse. Trends Cell Biol. 25:158-170. doi: 10.1016/j.tcb.2014.11.002.
-
(2015)
Trends Cell Biol.
, vol.25
, pp. 158-170
-
-
Scheibye-Knudsen, M.1
Fang, E.F.2
Croteau, D.L.3
Wilson Iii, D.M.4
Bohr, V.A.5
-
27
-
-
1642602686
-
Senescing human cells and ageing mice accumulate DNA lesions with unrepairable double-strand breaks
-
Sedelnikova, O.A, Horikawa, I, Zimonjic, D.B, Popescu, N.C, Bonner, W.M, and Barrett, J.C. 2004. Senescing human cells and ageing mice accumulate DNA lesions with unrepairable double-strand breaks. Nat. Cell Biol. 6:168-170. doi: 10.1038/ncb1095.
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 168-170
-
-
Sedelnikova, O.A.1
Horikawa, I.2
Zimonjic, D.B.3
Popescu, N.C.4
Bonner, W.M.5
Barrett, J.C.6
-
28
-
-
0021031547
-
Benzo[a]pyrene differentially alters mitochondrial and nuclear DNA synthesis in primary hepatocyte cultures
-
Stairs, P.W, Guzelian, P.S, and Van Tuyle, G.C. 1983. Benzo[a]pyrene differentially alters mitochondrial and nuclear DNA synthesis in primary hepatocyte cultures. Res. Commun. Chem. Pathol. Pharmacol. 42:95-106.
-
(1983)
Res. Commun. Chem. Pathol. Pharmacol.
, vol.42
, pp. 95-106
-
-
Stairs, P.W.1
Guzelian, P.S.2
Van Tuyle, G.C.3
-
29
-
-
77954035632
-
Mitochondrial DNA depletion syndromes—Many genes, common mechanisms
-
Suomalainen, A. and Isohanni, P. 2010. Mitochondrial DNA depletion syndromes—Many genes, common mechanisms. Neuromuscul. Disord. 20:429-437. doi: 10.1016/j.nmd.2010.03.017.
-
(2010)
Neuromuscul. Disord.
, vol.20
, pp. 429-437
-
-
Suomalainen, A.1
Isohanni, P.2
-
30
-
-
0034713926
-
Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA
-
Van Houten, B, Cheng, S, and Chen, Y. 2000. Measuring gene-specific nucleotide excision repair in human cells using quantitative amplification of long targets from nanogram quantities of DNA. Mutat. Res./DNA Repair 460:81-94. doi: 10.1016/S0921-8777(00)00018-5.
-
(2000)
Mutat. Res./DNA Repair
, vol.460
, pp. 81-94
-
-
Van Houten, B.1
Cheng, S.2
Chen, Y.3
-
31
-
-
84856325811
-
Measurement of mitochondrial DNA copy number
-
P.D.L.-J.C.Wong, ed.), Humana Press, Totowa, N.J
-
Venegas, V. and Halberg, M. 2012. Measurement of mitochondrial DNA copy number. In Mitochondrial Disorders, Vol. 837 (P.D.L.-J.C. Wong, ed.) pp. 327-335. Humana Press, Totowa, N.J.
-
(2012)
Mitochondrial Disorders
, vol.837
, pp. 327-335
-
-
Venegas, V.1
Halberg, M.2
-
32
-
-
58749085019
-
Agarose gel electrophoresis
-
/0471142727.mb0205as51
-
Voytas, D. 2000. Agarose gel electrophoresis. Curr. Protoc. Mol. Biol. 51:2.5A.1-2.5A.9. doi: 10.1002 /0471142727.mb0205as51.
-
(2000)
Curr. Protoc. Mol. Biol.
, vol.51
, pp. 2.5A.1-2.5A.9
-
-
Voytas, D.1
-
33
-
-
79959947007
-
Generation, function and diagnostic value of mitochondrial DNA copy number alterations in human cancers
-
Yu, M. 2011. Generation, function and diagnostic value of mitochondrial DNA copy number alterations in human cancers. Life Sci. 89:65-71. doi: 10.1016/j.lfs.2011.05.010.
-
(2011)
Life Sci.
, vol.89
, pp. 65-71
-
-
Yu, M.1
|