-
1
-
-
84991732069
-
Non-photochemical-quenching mechanisms in the cyanobacterium Thermosynechococcus elongatus
-
J.F. Allen E. Gantt J.H. Golbeck B. Osmond Springer Heidelberg
-
Abasova, L., Boulay, C., Vass, I., Kirilovsky, D., Non-photochemical-quenching mechanisms in the cyanobacterium Thermosynechococcus elongatus. Allen, J.F., Gantt, E., Golbeck, J.H., Osmond, B., (eds.) Photosynthesis. Energy from the Sun, 2008, Springer, Heidelberg, 993–996.
-
(2008)
Photosynthesis. Energy from the Sun
, pp. 993-996
-
-
Abasova, L.1
Boulay, C.2
Vass, I.3
Kirilovsky, D.4
-
2
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix. refine
-
Afonine, P.V., Grosse-Kunstleve, R.W., Echols, N., Headd, J.J., Moriarty, N.W., Mustyakimov, M., Terwilliger, T.C., Urzhumtsev, A., Zwart, P.H., Adams, P.D., Towards automated crystallographic structure refinement with phenix. refine. Acta Crystallogr. D Biol. Crystallogr. 68 (2012), 352–367.
-
(2012)
Acta Crystallogr. D Biol. Crystallogr.
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
Terwilliger, T.C.7
Urzhumtsev, A.8
Zwart, P.H.9
Adams, P.D.10
-
3
-
-
33751056968
-
A soluble 3D LC/MS/MS proteome of the filamentous cyanobacterium Nostoc punctiforme
-
Anderson, D.C., Campbell, E.L., Meeks, J.C., A soluble 3D LC/MS/MS proteome of the filamentous cyanobacterium Nostoc punctiforme. J. Proteome Res. 5 (2006), 3096–3104.
-
(2006)
J. Proteome Res.
, vol.5
, pp. 3096-3104
-
-
Anderson, D.C.1
Campbell, E.L.2
Meeks, J.C.3
-
4
-
-
84857755822
-
The photophysics of the orange carotenoid protein, a light-powered molecular switch
-
Berera, R., Van Stokkum, I.H.M., Gwizdala, M., Wilson, A., Kirilovsky, D., Van Grondelle, R., The photophysics of the orange carotenoid protein, a light-powered molecular switch. J. Phys. Chem. B 116 (2012), 2568–2574.
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 2568-2574
-
-
Berera, R.1
Van Stokkum, I.H.M.2
Gwizdala, M.3
Wilson, A.4
Kirilovsky, D.5
Van Grondelle, R.6
-
5
-
-
84946761206
-
Multi-omic dynamics associate oxygenic photosynthesis with nitrogenase-mediated H2 production in Cyanothece sp. ATCC 51142
-
Bernstein, H.C., Charania, M.A., McClure, R.S., Sadler, N.C., Melnicki, M.R., Hill, E.A., Markillie, L.M., Nicora, C.D., Wright, A.T., Romine, M.F., et al. Multi-omic dynamics associate oxygenic photosynthesis with nitrogenase-mediated H2 production in Cyanothece sp. ATCC 51142. Sci. Rep., 5, 2015, 16004.
-
(2015)
Sci. Rep.
, vol.5
, pp. 16004
-
-
Bernstein, H.C.1
Charania, M.A.2
McClure, R.S.3
Sadler, N.C.4
Melnicki, M.R.5
Hill, E.A.6
Markillie, L.M.7
Nicora, C.D.8
Wright, A.T.9
Romine, M.F.10
-
6
-
-
52949146331
-
Occurrence and function of the orange carotenoid protein in photoprotective mechanisms in various cyanobacteria
-
Boulay, C., Abasova, L., Six, C., Vass, I., Kirilovsky, D., Occurrence and function of the orange carotenoid protein in photoprotective mechanisms in various cyanobacteria. Biochim. Biophys. Acta 1777 (2008), 1344–1354.
-
(2008)
Biochim. Biophys. Acta
, vol.1777
, pp. 1344-1354
-
-
Boulay, C.1
Abasova, L.2
Six, C.3
Vass, I.4
Kirilovsky, D.5
-
7
-
-
84924787561
-
Biosynthesis of soluble carotenoid holoproteins in Escherichia coli
-
Bourcier de Carbon, C., Thurotte, A., Wilson, A., Perreau, F., Kirilovsky, D., Biosynthesis of soluble carotenoid holoproteins in Escherichia coli. Sci. Rep., 5, 2015, 9085.
-
(2015)
Sci. Rep.
, vol.5
, pp. 9085
-
-
Bourcier de Carbon, C.1
Thurotte, A.2
Wilson, A.3
Perreau, F.4
Kirilovsky, D.5
-
8
-
-
0025311083
-
Use of a conditionally lethal gene in Anabaena sp. strain PCC 7120 to select for double recombinants and to entrap insertion sequences
-
Cai, Y.P., Wolk, C.P., Use of a conditionally lethal gene in Anabaena sp. strain PCC 7120 to select for double recombinants and to entrap insertion sequences. J. Bacteriol. 172 (1990), 3138–3145.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 3138-3145
-
-
Cai, Y.P.1
Wolk, C.P.2
-
9
-
-
84855829776
-
Global transcription profiles of the nitrogen stress response resulting in heterocyst or hormogonium development in Nostoc punctiforme
-
Christman, H.D., Campbell, E.L., Meeks, J.C., Global transcription profiles of the nitrogen stress response resulting in heterocyst or hormogonium development in Nostoc punctiforme. J. Bacteriol. 193 (2011), 6874–6886.
-
(2011)
J. Bacteriol.
, vol.193
, pp. 6874-6886
-
-
Christman, H.D.1
Campbell, E.L.2
Meeks, J.C.3
-
10
-
-
84861544752
-
MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments
-
Collingridge, P.W., Kelly, S., MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments. BMC Bioinformatics, 13, 2012, 117.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 117
-
-
Collingridge, P.W.1
Kelly, S.2
-
11
-
-
80155142141
-
Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria
-
Criscuolo, A., Gribaldo, S., Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria. Mol. Biol. Evol. 28 (2011), 3019–3032.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 3019-3032
-
-
Criscuolo, A.1
Gribaldo, S.2
-
12
-
-
84896770392
-
Comparative proteomics reveals that a saxitoxin-producing and a nontoxic strain of Anabaena circinalis are two different ecotypes
-
D'Agostino, P.M., Song, X., Neilan, B.A., Moffitt, M.C., Comparative proteomics reveals that a saxitoxin-producing and a nontoxic strain of Anabaena circinalis are two different ecotypes. J. Proteome Res. 13 (2014), 1474–1484.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 1474-1484
-
-
D'Agostino, P.M.1
Song, X.2
Neilan, B.A.3
Moffitt, M.C.4
-
13
-
-
14644430471
-
ProbCons: probabilistic consistency-based multiple sequence alignment
-
Do, C.B., Mahabhashyam, M.S.P., Brudno, M., Batzoglou, S., ProbCons: probabilistic consistency-based multiple sequence alignment. Genome Res. 15 (2005), 330–340.
-
(2005)
Genome Res.
, vol.15
, pp. 330-340
-
-
Do, C.B.1
Mahabhashyam, M.S.P.2
Brudno, M.3
Batzoglou, S.4
-
14
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C., MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (2004), 1792–1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
15
-
-
0030941679
-
Reduction of conjugal transfer efficiency by three restriction activities of Anabaena sp. strain PCC 7120
-
Elhai, J., Vepritskiy, A., Muro-Pastor, A.M., Flores, E., Wolk, C.P., Reduction of conjugal transfer efficiency by three restriction activities of Anabaena sp. strain PCC 7120. J. Bacteriol. 179 (1997), 1998–2005.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 1998-2005
-
-
Elhai, J.1
Vepritskiy, A.2
Muro-Pastor, A.M.3
Flores, E.4
Wolk, C.P.5
-
17
-
-
84860714868
-
Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites
-
Engene, N., Rottacker, E.C., Kaštovský, J., Byrum, T., Choi, H., Ellisman, M.H., Komárek, J., Gerwick, W.H., Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites. Int. J. Syst. Evol. Microbiol. 62 (2012), 1171–1178.
-
(2012)
Int. J. Syst. Evol. Microbiol.
, vol.62
, pp. 1171-1178
-
-
Engene, N.1
Rottacker, E.C.2
Kaštovský, J.3
Byrum, T.4
Choi, H.5
Ellisman, M.H.6
Komárek, J.7
Gerwick, W.H.8
-
18
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright, A.J., Iliopoulos, I., Kyrpides, N.C., Ouzounis, C.A., Protein interaction maps for complete genomes based on gene fusion events. Nature 402 (1999), 86–90.
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
19
-
-
79959584995
-
Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation
-
Flaherty, B.L., Van Nieuwerburgh, F., Head, S.R., Golden, J.W., Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation. BMC Genomics, 12, 2011, 332.
-
(2011)
BMC Genomics
, vol.12
, pp. 332
-
-
Flaherty, B.L.1
Van Nieuwerburgh, F.2
Head, S.R.3
Golden, J.W.4
-
20
-
-
84899745347
-
Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont “Candidatus Synechococcus spongiarum”
-
e00079-14
-
Gao, Z.-M., Wang, Y., Tian, R.-M., Wong, Y.H., Batang, Z.B., Al-Suwailem, A.M., Bajic, V.B., Qian, P.-Y., Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont “Candidatus Synechococcus spongiarum”. mBio, 5, 2014 e00079-14.
-
(2014)
mBio
, vol.5
-
-
Gao, Z.-M.1
Wang, Y.2
Tian, R.-M.3
Wong, Y.H.4
Batang, Z.B.5
Al-Suwailem, A.M.6
Bajic, V.B.7
Qian, P.-Y.8
-
21
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W., Gascuel, O., New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59 (2010), 307–321.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
22
-
-
80051943328
-
In vitro reconstitution of the cyanobacterial photoprotective mechanism mediated by the orange carotenoid protein in Synechocystis PCC 6803
-
Gwizdala, M., Wilson, A., Kirilovsky, D., In vitro reconstitution of the cyanobacterial photoprotective mechanism mediated by the orange carotenoid protein in Synechocystis PCC 6803. Plant Cell 23 (2011), 2631–2643.
-
(2011)
Plant Cell
, vol.23
, pp. 2631-2643
-
-
Gwizdala, M.1
Wilson, A.2
Kirilovsky, D.3
-
23
-
-
71749099862
-
phyloXML: XML for evolutionary biology and comparative genomics
-
Han, M.V., Zmasek, C.M., phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics, 10, 2009, 356.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 356
-
-
Han, M.V.1
Zmasek, C.M.2
-
24
-
-
84877773615
-
Genomic deletions disrupt nitrogen metabolism pathways of a cyanobacterial diatom symbiont
-
Hilton, J.A., Foster, R.A., Tripp, H.J., Carter, B.J., Zehr, J.P., Villareal, T.A., Genomic deletions disrupt nitrogen metabolism pathways of a cyanobacterial diatom symbiont. Nat. Commun., 4, 2013, 1767.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1767
-
-
Hilton, J.A.1
Foster, R.A.2
Tripp, H.J.3
Carter, B.J.4
Zehr, J.P.5
Villareal, T.A.6
-
25
-
-
0019819335
-
A carotenoid-protein from cyanobacteria
-
Holt, T.K., Krogmann, D.W., A carotenoid-protein from cyanobacteria. Biochim. Biophys. Acta 637 (1981), 408–414.
-
(1981)
Biochim. Biophys. Acta
, vol.637
, pp. 408-414
-
-
Holt, T.K.1
Krogmann, D.W.2
-
27
-
-
84875619226
-
Mafft multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh, K., Standley, D.M., Mafft multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30 (2013), 772–780.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
28
-
-
4043090514
-
Water-soluble carotenoid proteins of cyanobacteria
-
Kerfeld, C.A., Water-soluble carotenoid proteins of cyanobacteria. Arch. Biochem. Biophys. 430 (2004), 2–9.
-
(2004)
Arch. Biochem. Biophys.
, vol.430
, pp. 2-9
-
-
Kerfeld, C.A.1
-
29
-
-
4043181319
-
Structure and function of the water-soluble carotenoid-binding proteins of cyanobacteria
-
Kerfeld, C.A., Structure and function of the water-soluble carotenoid-binding proteins of cyanobacteria. Photosynthesis Research 81 (2004), 215–225.
-
(2004)
Photosynthesis Research
, vol.81
, pp. 215-225
-
-
Kerfeld, C.A.1
-
30
-
-
0037226278
-
The crystal structure of a cyanobacterial water-soluble carotenoid binding protein
-
Kerfeld, C.A., Sawaya, M.R., Brahmandam, V., Cascio, D., Ho, K.K., Trevithick-Sutton, C.C., Krogmann, D.W., Yeates, T.O., The crystal structure of a cyanobacterial water-soluble carotenoid binding protein. Structure 11 (2003), 55–65.
-
(2003)
Structure
, vol.11
, pp. 55-65
-
-
Kerfeld, C.A.1
Sawaya, M.R.2
Brahmandam, V.3
Cascio, D.4
Ho, K.K.5
Trevithick-Sutton, C.C.6
Krogmann, D.W.7
Yeates, T.O.8
-
31
-
-
42449094561
-
VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays
-
Kestler, H.A., Muller, A., Kraus, J.M., Buchholz, M., Gress, T.M., Liu, H., Kane, D.W., Zeeberg, B.R., Weinstein, J.N., VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays. BMC Bioinformatics, 9, 2008, 67.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 67
-
-
Kestler, H.A.1
Muller, A.2
Kraus, J.M.3
Buchholz, M.4
Gress, T.M.5
Liu, H.6
Kane, D.W.7
Zeeberg, B.R.8
Weinstein, J.N.9
-
32
-
-
84880237267
-
The orange carotenoid protein: a blue-green light photoactive protein
-
Kirilovsky, D., Kerfeld, C.A., The orange carotenoid protein: a blue-green light photoactive protein. Photochem. Photobiol. Sci. 12 (2013), 1135–1143.
-
(2013)
Photochem. Photobiol. Sci.
, vol.12
, pp. 1135-1143
-
-
Kirilovsky, D.1
Kerfeld, C.A.2
-
33
-
-
84896893249
-
Structural and functional modularity of the orange carotenoid protein: distinct roles for the N- and C-terminal domains in cyanobacterial photoprotection
-
Leverenz, R.L., Jallet, D., Li, M.D., Mathies, R.A., Kirilovsky, D., Kerfeld, C.A., Structural and functional modularity of the orange carotenoid protein: distinct roles for the N- and C-terminal domains in cyanobacterial photoprotection. Plant Cell 26 (2014), 426–437.
-
(2014)
Plant Cell
, vol.26
, pp. 426-437
-
-
Leverenz, R.L.1
Jallet, D.2
Li, M.D.3
Mathies, R.A.4
Kirilovsky, D.5
Kerfeld, C.A.6
-
34
-
-
84933564631
-
A 12 Å carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection
-
Leverenz, R.L., Sutter, M., Wilson, A., Gupta, S., Thurotte, A., Bourcier de Carbon, C., Petzold, C.J., Ralston, C., Perreau, F., Kirilovsky, D., et al. A 12 Å carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection. Science 348 (2015), 1463–1466.
-
(2015)
Science
, vol.348
, pp. 1463-1466
-
-
Leverenz, R.L.1
Sutter, M.2
Wilson, A.3
Gupta, S.4
Thurotte, A.5
Bourcier de Carbon, C.6
Petzold, C.J.7
Ralston, C.8
Perreau, F.9
Kirilovsky, D.10
-
35
-
-
84977581459
-
Different functions of the paralogs to the N-terminal domain of the Orange Carotenoid Protein in the cyanobacterium Anabaena sp. PCC 7120
-
López-Igual, R., Wilson, A., Leverenz, R.L., Melnicki, M.R., Bourcier de Carbon, C., Sutter, M., Turmo, A., Perreau, F., Kerfeld, C.A., Kirilovsky, D., Different functions of the paralogs to the N-terminal domain of the Orange Carotenoid Protein in the cyanobacterium Anabaena sp. PCC 7120. Plant Physiol., 2016, 10.1104/pp.16/00502.
-
(2016)
Plant Physiol.
-
-
López-Igual, R.1
Wilson, A.2
Leverenz, R.L.3
Melnicki, M.R.4
Bourcier de Carbon, C.5
Sutter, M.6
Turmo, A.7
Perreau, F.8
Kerfeld, C.A.9
Kirilovsky, D.10
-
36
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte, E.M., Pellegrini, M., Ng, H.-L., Rice, D.W., Yeates, T.O., Eisenberg, D., Detecting protein function and protein-protein interactions from genome sequences. Science 285 (1999), 751–753.
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.-L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
37
-
-
84861898310
-
IMG: the integrated microbial genomes database and comparative analysis system
-
Markowitz, V.M., Chen, I.M.A., Palaniappan, K., Chu, K., Szeto, E., Grechkin, Y., Ratner, A., Jacob, B., Huang, J., Williams, P., et al. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40 (2012), D115–D122.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D115-D122
-
-
Markowitz, V.M.1
Chen, I.M.A.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Grechkin, Y.6
Ratner, A.7
Jacob, B.8
Huang, J.9
Williams, P.10
-
38
-
-
84865729740
-
Sustained H(2) production driven by photosynthetic water splitting in a unicellular cyanobacterium
-
e00197–e00112
-
Melnicki, M.R., Pinchuk, G.E., Hill, E.A., Kucek, L.A., Fredrickson, J.K., Konopka, A., Beliaev, A.S., Sustained H(2) production driven by photosynthetic water splitting in a unicellular cyanobacterium. mBio, 3, 2012 e00197–e00112.
-
(2012)
mBio
, vol.3
-
-
Melnicki, M.R.1
Pinchuk, G.E.2
Hill, E.A.3
Kucek, L.A.4
Fredrickson, J.K.5
Konopka, A.6
Beliaev, A.S.7
-
39
-
-
77952535003
-
Structure and function of plant photoreceptors
-
Möglich, A., Yang, X., Ayers, R.A., Moffat, K., Structure and function of plant photoreceptors. Annu. Rev. Plant Biol. 61 (2010), 21–47.
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 21-47
-
-
Möglich, A.1
Yang, X.2
Ayers, R.A.3
Moffat, K.4
-
40
-
-
4344708876
-
Slr1293 in Synechocystis sp. strain PCC 6803 is the C-3′,4′ desaturase (CrtD) involved in myxoxanthophyll biosynthesis
-
Mohamed, H.E., Vermaas, W., Slr1293 in Synechocystis sp. strain PCC 6803 is the C-3′,4′ desaturase (CrtD) involved in myxoxanthophyll biosynthesis. J. Bacteriol., 186, 2004, 5621.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 5621
-
-
Mohamed, H.E.1
Vermaas, W.2
-
41
-
-
41949139372
-
Quantitative shotgun proteomics of enriched heterocysts from Nostoc sp. PCC 7120 using 8-plex isobaric peptide tags
-
Ow, S.Y., Cardona, T., Taton, A., Magnuson, A., Lindblad, P., Stensjö, K., Wright, P.C., Quantitative shotgun proteomics of enriched heterocysts from Nostoc sp. PCC 7120 using 8-plex isobaric peptide tags. J. Proteome Res. 7 (2008), 1615–1628.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1615-1628
-
-
Ow, S.Y.1
Cardona, T.2
Taton, A.3
Magnuson, A.4
Lindblad, P.5
Stensjö, K.6
Wright, P.C.7
-
42
-
-
60849087991
-
Quantitative overview of N 2 fixation in Nostoc punctiforme ATCC 29133 through cellular enrichments and iTRAQ shotgun proteomics
-
Ow, S.Y., Nolrel, J., Cardona, T., Taton, A., Lindblad, P., Stensjö, K., Wright, P.C., Quantitative overview of N 2 fixation in Nostoc punctiforme ATCC 29133 through cellular enrichments and iTRAQ shotgun proteomics. J. Proteome Res. 8 (2009), 187–198.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 187-198
-
-
Ow, S.Y.1
Nolrel, J.2
Cardona, T.3
Taton, A.4
Lindblad, P.5
Stensjö, K.6
Wright, P.C.7
-
43
-
-
84887038040
-
Cell-specific gene expression in Anabaena variabilis grown phototrophically, mixotrophically, and heterotrophically
-
Park, J.-J., Lechno-Yossef, S., Wolk, C.P., Vieille, C., Cell-specific gene expression in Anabaena variabilis grown phototrophically, mixotrophically, and heterotrophically. BMC Genomics, 14, 2013, 759.
-
(2013)
BMC Genomics
, vol.14
, pp. 759
-
-
Park, J.-J.1
Lechno-Yossef, S.2
Wolk, C.P.3
Vieille, C.4
-
44
-
-
84862195254
-
Prochlorococcus: advantages and limits of minimalism
-
Partensky, F., Garczarek, L., Prochlorococcus: advantages and limits of minimalism. Annu. Rev. Mar. Sci. 2 (2010), 305–331.
-
(2010)
Annu. Rev. Mar. Sci.
, vol.2
, pp. 305-331
-
-
Partensky, F.1
Garczarek, L.2
-
45
-
-
27744488568
-
Heterotachy and long-branch attraction in phylogenetics
-
Philippe, H., Zhou, Y., Brinkmann, H., Rodrigue, N., Delsuc, F., Heterotachy and long-branch attraction in phylogenetics. BMC Evol. Biol., 5, 2005, 50.
-
(2005)
BMC Evol. Biol.
, vol.5
, pp. 50
-
-
Philippe, H.1
Zhou, Y.2
Brinkmann, H.3
Rodrigue, N.4
Delsuc, F.5
-
46
-
-
61549113770
-
Influence of zeaxanthin and echinenone binding on the activity of the Orange Carotenoid Protein
-
Punginelli, C., Wilson, A., Routaboul, J.M., Kirilovsky, D., Influence of zeaxanthin and echinenone binding on the activity of the Orange Carotenoid Protein. Biochim. Biophys. Acta 1787 (2009), 280–288.
-
(2009)
Biochim. Biophys. Acta
, vol.1787
, pp. 280-288
-
-
Punginelli, C.1
Wilson, A.2
Routaboul, J.M.3
Kirilovsky, D.4
-
47
-
-
84886726844
-
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
-
Rajeev, L., Nunes da Rocha, U., Klitgord, N., Luning, E.G., Fortney, J., Axen, S.D., Shih, P.M., Bouskill, N.J., Bowen, B.P., Kerfeld, C.A., et al. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ISME J. 7 (2013), 2178–2191.
-
(2013)
ISME J.
, vol.7
, pp. 2178-2191
-
-
Rajeev, L.1
Nunes da Rocha, U.2
Klitgord, N.3
Luning, E.G.4
Fortney, J.5
Axen, S.D.6
Shih, P.M.7
Bouskill, N.J.8
Bowen, B.P.9
Kerfeld, C.A.10
-
48
-
-
0034201441
-
EMBOSS: the European molecular biology open software suite
-
Rice, P., Longden, I., Bleasby, A., EMBOSS: the European molecular biology open software suite. Trends Genet. 16 (2000), 276–277.
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
49
-
-
0018409915
-
Generic assignments, strain histories and properties of pure cultures of cyanobacteria
-
Rippka, R., Deruelles, J., Waterbury, J.B., Herdman, M., Stanier, R.Y., Generic assignments, strain histories and properties of pure cultures of cyanobacteria. J. Gen. Microbiol. 111 (1979), 1–61.
-
(1979)
J. Gen. Microbiol.
, vol.111
, pp. 1-61
-
-
Rippka, R.1
Deruelles, J.2
Waterbury, J.B.3
Herdman, M.4
Stanier, R.Y.5
-
50
-
-
84901400843
-
The cyanobacterial photoactive orange carotenoid protein is an excellent singlet oxygen quencher
-
Sedoud, A., López-Igual, R., Ur Rehman, A., Wilson, A., Perreau, F., Boulay, C., Vass, I., Krieger-Liszkay, A., Kirilovsky, D., The cyanobacterial photoactive orange carotenoid protein is an excellent singlet oxygen quencher. Plant Cell 26 (2014), 1781–1791.
-
(2014)
Plant Cell
, vol.26
, pp. 1781-1791
-
-
Sedoud, A.1
López-Igual, R.2
Ur Rehman, A.3
Wilson, A.4
Perreau, F.5
Boulay, C.6
Vass, I.7
Krieger-Liszkay, A.8
Kirilovsky, D.9
-
51
-
-
84872589843
-
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
-
Shih, P.M., Wu, D., Latifi, A., Axen, S.D., Fewer, D.P., Talla, E., Calteau, A., Cai, F., Tandeau de Marsac, N., Rippka, R., et al. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc. Natl. Acad. Sci. USA 110 (2013), 1053–1058.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 1053-1058
-
-
Shih, P.M.1
Wu, D.2
Latifi, A.3
Axen, S.D.4
Fewer, D.P.5
Talla, E.6
Calteau, A.7
Cai, F.8
Tandeau de Marsac, N.9
Rippka, R.10
-
52
-
-
1042280957
-
Phylogenomic inference of protein molecular function: advances and challenges
-
Sjölander, K., Phylogenomic inference of protein molecular function: advances and challenges. Bioinformatics 20 (2004), 170–179.
-
(2004)
Bioinformatics
, vol.20
, pp. 170-179
-
-
Sjölander, K.1
-
53
-
-
84878986302
-
Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria
-
Sutter, M., Wilson, A., Leverenz, R.L., López-Igual, R., Thurotte, A., Salmeen, A.E., Kirilovsky, D., Kerfeld, C.A., Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria. Proc. Natl. Acad. Sci. USA 110 (2013), 10022–10027.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 10022-10027
-
-
Sutter, M.1
Wilson, A.2
Leverenz, R.L.3
López-Igual, R.4
Thurotte, A.5
Salmeen, A.E.6
Kirilovsky, D.7
Kerfeld, C.A.8
-
54
-
-
41149116094
-
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
-
Swingley, W.D., Chen, M., Cheung, P.C., Conrad, A.L., Dejesa, L.C., Hao, J., Honchak, B.M., Karbach, L.E., Kurdoglu, A., Lahiri, S., et al. Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina. Proc. Natl. Acad. Sci. USA 105 (2008), 2005–2010.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 2005-2010
-
-
Swingley, W.D.1
Chen, M.2
Cheung, P.C.3
Conrad, A.L.4
Dejesa, L.C.5
Hao, J.6
Honchak, B.M.7
Karbach, L.E.8
Kurdoglu, A.9
Lahiri, S.10
-
55
-
-
84866464957
-
Unicellular cyanobacterium symbiotic with a single-Celled Eukaryotic Alga
-
Thompson, A.W., Foster, R.A., Krupke, A., Carter, B.J., Musat, N., Vaulot, D., Kuypers, M.M.M., Zehr, J.P., Unicellular cyanobacterium symbiotic with a single-Celled Eukaryotic Alga. Science 337 (2012), 1546–1550.
-
(2012)
Science
, vol.337
, pp. 1546-1550
-
-
Thompson, A.W.1
Foster, R.A.2
Krupke, A.3
Carter, B.J.4
Musat, N.5
Vaulot, D.6
Kuypers, M.M.M.7
Zehr, J.P.8
-
56
-
-
84940911120
-
Regulation of orange carotenoid protein activity in cyanobacterial photoprotection
-
Thurotte, A., López-Igual, R., Wilson, A., Comolet, L., Bourcier de Carbon, C., Xiao, F., Kirilovsky, D., Regulation of orange carotenoid protein activity in cyanobacterial photoprotection. Plant Physiol. 169 (2015), 737–747.
-
(2015)
Plant Physiol.
, vol.169
, pp. 737-747
-
-
Thurotte, A.1
López-Igual, R.2
Wilson, A.3
Comolet, L.4
Bourcier de Carbon, C.5
Xiao, F.6
Kirilovsky, D.7
-
57
-
-
66749087628
-
Transcriptional analysis of the unicellular, diazotrophic cyanobacterium Cyanothece sp. ATCC 51142 grown under short day/night cycles
-
Toepel, J., McDermott, J.E., Summerfield, T.C., Sherman, L.A., Transcriptional analysis of the unicellular, diazotrophic cyanobacterium Cyanothece sp. ATCC 51142 grown under short day/night cycles. J. Phycol. 45 (2009), 610–620.
-
(2009)
J. Phycol.
, vol.45
, pp. 610-620
-
-
Toepel, J.1
McDermott, J.E.2
Summerfield, T.C.3
Sherman, L.A.4
-
58
-
-
84875521277
-
Insights into the physiology and ecology of the brackish-water-adapted cyanobacterium Nodularia spumigena CCY9414 based on a genome-transcriptome analysis
-
Voß, B., Bolhuis, H., Fewer, D.P., Kopf, M., Möke, F., Haas, F., El-Shehawy, R., Hayes, P., Bergman, B., Sivonen, K., et al. Insights into the physiology and ecology of the brackish-water-adapted cyanobacterium Nodularia spumigena CCY9414 based on a genome-transcriptome analysis. PLoS One, 8, 2013, e60224.
-
(2013)
PLoS One
, vol.8
, pp. e60224
-
-
Voß, B.1
Bolhuis, H.2
Fewer, D.P.3
Kopf, M.4
Möke, F.5
Haas, F.6
El-Shehawy, R.7
Hayes, P.8
Bergman, B.9
Sivonen, K.10
-
59
-
-
84946709873
-
Dissecting pigment architecture of individual photosynthetic antenna complexes in solution
-
Wang, Q., Moerner, W.E., Dissecting pigment architecture of individual photosynthetic antenna complexes in solution. Proc. Natl. Acad. Sci. USA, 112, 2015, 201514027.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 201514027
-
-
Wang, Q.1
Moerner, W.E.2
-
60
-
-
65449188232
-
Jalview Version 2–a multiple sequence alignment editor and analysis workbench
-
Waterhouse, A.M., Procter, J.B., Martin, D.M.A., Clamp, M., Barton, G.J., Jalview Version 2–a multiple sequence alignment editor and analysis workbench. Bioinformatics 25 (2009), 1189–1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
61
-
-
84892407811
-
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models
-
Wheeler, T.J., Clements, J., Finn, R.D., Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models. BMC Bioinformatics, 15, 2014, 7.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 7
-
-
Wheeler, T.J.1
Clements, J.2
Finn, R.D.3
-
62
-
-
34250630830
-
Light-induced energy dissipation in iron-starved cyanobacteria: roles of OCP and IsiA proteins
-
Wilson, A., Boulay, C., Wilde, A., Kerfeld, C.A., Kirilovsky, D., Light-induced energy dissipation in iron-starved cyanobacteria: roles of OCP and IsiA proteins. Plant Cell 19 (2007), 656–672.
-
(2007)
Plant Cell
, vol.19
, pp. 656-672
-
-
Wilson, A.1
Boulay, C.2
Wilde, A.3
Kerfeld, C.A.4
Kirilovsky, D.5
-
63
-
-
50149083653
-
A photoactive carotenoid protein acting as light intensity sensor
-
Wilson, A., Punginelli, C., Gall, A., Bonetti, C., Alexandre, M., Routaboul, J.-m., Kerfeld, C.A., Grondelle, R.V., Robert, B., Kennis, J.T.M., et al. A photoactive carotenoid protein acting as light intensity sensor. Proc. Natl. Acad. Sci. USA 105 (2008), 12075–12080.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 12075-12080
-
-
Wilson, A.1
Punginelli, C.2
Gall, A.3
Bonetti, C.4
Alexandre, M.5
Routaboul, J.-M.6
Kerfeld, C.A.7
Grondelle, R.V.8
Robert, B.9
Kennis, J.T.M.10
-
64
-
-
77953313030
-
Structural determinants underlying photoprotection in the photoactive orange carotenoid protein of cyanobacteria
-
Wilson, A., Kinney, J.N., Zwart, P.H., Punginelli, C., D'Haene, S., Perreau, F., Klein, M.G., Kirilovsky, D., Kerfeld, C.A., Structural determinants underlying photoprotection in the photoactive orange carotenoid protein of cyanobacteria. J. Biol. Chem. 285 (2010), 18364–18375.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 18364-18375
-
-
Wilson, A.1
Kinney, J.N.2
Zwart, P.H.3
Punginelli, C.4
D'Haene, S.5
Perreau, F.6
Klein, M.G.7
Kirilovsky, D.8
Kerfeld, C.A.9
-
65
-
-
78650936291
-
Essential role of two tyrosines and two tryptophans on the photoprotection activity of the Orange Carotenoid Protein
-
Wilson, A., Punginelli, C., Couturier, M., Perreau, F., Kirilovsky, D., Essential role of two tyrosines and two tryptophans on the photoprotection activity of the Orange Carotenoid Protein. Biochim. Biophys. Acta 1807 (2011), 293–301.
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 293-301
-
-
Wilson, A.1
Punginelli, C.2
Couturier, M.3
Perreau, F.4
Kirilovsky, D.5
-
66
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M.D., Ballard, C.C., Cowtan, K.D., Dodson, E.J., Emsley, P., Evans, P.R., Keegan, R.M., Krissinel, E.B., Leslie, A.G.W., McCoy, A., et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D Biol. Crystallogr. 67 (2011), 235–242.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.W.9
McCoy, A.10
-
67
-
-
0030687617
-
The orange carotenoid protein of Synechocystis PCC 6803
-
Wu, Y.P., Krogmann, D.W., The orange carotenoid protein of Synechocystis PCC 6803. Biochim. Biophys. Acta 1322 (1997), 1–7.
-
(1997)
Biochim. Biophys. Acta
, vol.1322
, pp. 1-7
-
-
Wu, Y.P.1
Krogmann, D.W.2
-
68
-
-
84930221887
-
Biochemical validation of the glyoxylate cycle in the cyanobacterium Chlorogloeopsis fritschii strain PCC 9212
-
Zhang, S., Bryant, D.A., Biochemical validation of the glyoxylate cycle in the cyanobacterium Chlorogloeopsis fritschii strain PCC 9212. J. Biol. Chem. 290 (2015), 14019–14030.
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 14019-14030
-
-
Zhang, S.1
Bryant, D.A.2
|