메뉴 건너뛰기




Volumn 15, Issue 5, 2017, Pages 547-557

Genomic regions, cellular components and gene regulatory basis underlying pod length variations in cowpea (V. unguiculata L. Walp)

Author keywords

Cowpea; Domestication; GWAS; Pod length; Selection; Transcriptome

Indexed keywords

AFRICA; CHINA; GENE EXPRESSION REGULATION; GENETICS; GENOME-WIDE ASSOCIATION STUDY; PHARMACOGENETIC VARIANT; POPULATION GENETICS; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; VIGNA;

EID: 84991571919     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12639     Document Type: Article
Times cited : (70)

References (42)
  • 1
    • 8544236539 scopus 로고
    • The relationship among yield and other characters in vegetable cowpea and the effect of different trellis management on pod yield
    • Aggarwal, V.D., Natare, R.B. and Smithson, J.B. (1982) The relationship among yield and other characters in vegetable cowpea and the effect of different trellis management on pod yield. Trop. Grain Leg. Bull. 25, 8–14.
    • (1982) Trop. Grain Leg. Bull. , vol.25 , pp. 8-14
    • Aggarwal, V.D.1    Natare, R.B.2    Smithson, J.B.3
  • 2
    • 77958134755 scopus 로고    scopus 로고
    • Ascertainment biases in SNP Chips affect measures of population divergence
    • Albrechtsen, A., Nielsen, F.C. and Nielsen, R. (2010) Ascertainment biases in SNP Chips affect measures of population divergence. Mol. Biol. Evol. 27, 2534–2547.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2534-2547
    • Albrechtsen, A.1    Nielsen, F.C.2    Nielsen, R.3
  • 3
    • 0347719433 scopus 로고
    • Correlation studies on yield and agronomic characters in cowpea
    • Bapna, C.S., Joshi, S.N. and Kabria, M.M. (1972) Correlation studies on yield and agronomic characters in cowpea. Indian J. Agron. 17, 321–324.
    • (1972) Indian J. Agron. , vol.17 , pp. 321-324
    • Bapna, C.S.1    Joshi, S.N.2    Kabria, M.M.3
  • 5
    • 60849139395 scopus 로고    scopus 로고
    • Gorilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
    • Eden, E., Navon, R., Steinfeld, I., Lipson, D. and Yakhini, Z. (2009) Gorilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics, 10, 48.
    • (2009) BMC Bioinformatics , vol.10 , pp. 48
    • Eden, E.1    Navon, R.2    Steinfeld, I.3    Lipson, D.4    Yakhini, Z.5
  • 7
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno, G., Regnaut, S. and Goudet, J. (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14, 2611–2620.
    • (2005) Mol. Ecol. , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 8
    • 34447517565 scopus 로고    scopus 로고
    • Genetic diversity of cowpea [Vigna unguiculata. L. Walp.] in four West African and USA breeding programs as determined by AFLP analysis
    • Fang, J.G., Chao, C.C.T., Roberts, P.A. and Ehlers, J.D. (1996) Genetic diversity of cowpea [Vigna unguiculata. L. Walp.] in four West African and USA breeding programs as determined by AFLP analysis. Genet. Resour. Crop Ev. 54, 1197–1209.
    • (1996) Genet. Resour. Crop Ev. , vol.54 , pp. 1197-1209
    • Fang, J.G.1    Chao, C.C.T.2    Roberts, P.A.3    Ehlers, J.D.4
  • 9
    • 70449377618 scopus 로고    scopus 로고
    • Breeding strategy for improving plant type, pod yield and protein content in vegetable cowpea (Vigna unguiculata)
    • Hazra, P., Chattopadhaya, A., Dasgupta, T., Kar, N., Das, P.K. and Som, M.G. (2007) Breeding strategy for improving plant type, pod yield and protein content in vegetable cowpea (Vigna unguiculata). Acta Hortic. 752, 725–780.
    • (2007) Acta Hortic. , vol.752 , pp. 725-780
    • Hazra, P.1    Chattopadhaya, A.2    Dasgupta, T.3    Kar, N.4    Das, P.K.5    Som, M.G.6
  • 10
    • 77649219524 scopus 로고    scopus 로고
    • Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    • Hohenlohe, P.A., Bassham, S., Etter, P.D., Stiffler, N., Johnson, E.A. and Cresko, W.A. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet. 6, e1000862.
    • (2010) PLoS Genet. , vol.6
    • Hohenlohe, P.A.1    Bassham, S.2    Etter, P.D.3    Stiffler, N.4    Johnson, E.A.5    Cresko, W.A.6
  • 11
    • 35349010813 scopus 로고    scopus 로고
    • Genome dissection of traits related to domestication in azuki bean (Vigna angularis) and comparison with other warm-season legumes
    • Isemura, T., Kaga, A., Konishi, S., Ando, T., Tomooka, N., Han, O.K. and Vaugha, D.A. (2007) Genome dissection of traits related to domestication in azuki bean (Vigna angularis) and comparison with other warm-season legumes. Ann. Bot. 100, 1053–1071.
    • (2007) Ann. Bot. , vol.100 , pp. 1053-1071
    • Isemura, T.1    Kaga, A.2    Konishi, S.3    Ando, T.4    Tomooka, N.5    Han, O.K.6    Vaugha, D.A.7
  • 12
    • 78649612746 scopus 로고    scopus 로고
    • The genetics of domestication of rice bean, Vigna umbellata
    • Isemura, T., Kaga, A., Tomooka, N., Shimizu, T. and Vaughan, D.A. (2010) The genetics of domestication of rice bean, Vigna umbellata. Ann. Bot. 106, 927–944.
    • (2010) Ann. Bot. , vol.106 , pp. 927-944
    • Isemura, T.1    Kaga, A.2    Tomooka, N.3    Shimizu, T.4    Vaughan, D.A.5
  • 13
    • 84863393829 scopus 로고    scopus 로고
    • An SSR-based linkage map of yardlong bean (Vigna unguiculata (L.) Walp. subsp. unguiculata Sesquipedalis Group) and QTL analysis of pod length
    • Kongjaimun, A., Kaga, A., Tomooka, N., Somta, P., Vaughan, D.A. and Srinives, P. (2012a) An SSR-based linkage map of yardlong bean (Vigna unguiculata (L.) Walp. subsp. unguiculata Sesquipedalis Group) and QTL analysis of pod length. Genome, 55, 81–92.
    • (2012) Genome , vol.55 , pp. 81-92
    • Kongjaimun, A.1    Kaga, A.2    Tomooka, N.3    Somta, P.4    Vaughan, D.A.5    Srinives, P.6
  • 14
    • 84860440179 scopus 로고    scopus 로고
    • The genetics of domestication of yardlong bean, Vigna unguiculata (L.) Walp. ssp. unguiculata cv. -gr. sesquipedalis
    • Kongjaimun, A., Kaga, A., Tomooka, N., Somta, P., Vaughan, D.A. and Srinives, P. (2012b) The genetics of domestication of yardlong bean, Vigna unguiculata (L.) Walp. ssp. unguiculata cv. -gr. sesquipedalis. Ann. Bot. 109, 1185–2000.
    • (2012) Ann. Bot. , vol.109 , pp. 1185-2000
    • Kongjaimun, A.1    Kaga, A.2    Tomooka, N.3    Somta, P.4    Vaughan, D.A.5    Srinives, P.6
  • 15
    • 84870748770 scopus 로고    scopus 로고
    • QTL mapping of pod tenderness and total soluble solid in yardlong bean [Vigna unguiculata (L.) Walp. subsp. unguiculata cv.-gr. sesquipedalis]
    • Kongjaimun, A., Somta, P., Tomooka, N., Kaga, A., Vaughan, D.A. and Srinives, P. (2013) QTL mapping of pod tenderness and total soluble solid in yardlong bean [Vigna unguiculata (L.) Walp. subsp. unguiculata cv.-gr. sesquipedalis]. Euphytica, 189, 217–223.
    • (2013) Euphytica , vol.189 , pp. 217-223
    • Kongjaimun, A.1    Somta, P.2    Tomooka, N.3    Kaga, A.4    Vaughan, D.A.5    Srinives, P.6
  • 17
    • 85042498429 scopus 로고    scopus 로고
    • Genome resources for climate-resilient cowpea, an essential crop for food security
    • 059261;
    • Muñoz-Amatriaín, M., Mirebrahim, H., Xu, P., Wanamaker, S., Luo, M.C., Alhakami, H., Alpert, M. et al. (2016) Genome resources for climate-resilient cowpea, an essential crop for food security. bioRxiv, 059261; doi: http://dx.doi.org/10.1101/059261.
    • (2016) bioRxiv
    • Muñoz-Amatriaín, M.1    Mirebrahim, H.2    Xu, P.3    Wanamaker, S.4    Luo, M.C.5    Alhakami, H.6    Alpert, M.7
  • 18
    • 77958166404 scopus 로고    scopus 로고
    • Washington, DC, The National Academies Press
    • National Research Council. (2006) Lost Crops of Africa: Volume II: Vegetables. Washington, DC: The National Academies Press.
    • (2006) Lost Crops of Africa: Volume II: Vegetables
  • 20
    • 33845299659 scopus 로고    scopus 로고
    • Fresh pod yield and some pod characteristics of cowpea (Vigna unguiculata L. Walp.) genotypes from Turkey
    • Peksen, A. (2004) Fresh pod yield and some pod characteristics of cowpea (Vigna unguiculata L. Walp.) genotypes from Turkey. Asia J. Plant Sci. 3, 269–273.
    • (2004) Asia J. Plant Sci. , vol.3 , pp. 269-273
    • Peksen, A.1
  • 21
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure from multilocus genotype data
    • Pritchard, J.K., Stephens, M. and Donnelly, P. (2000) Inference of population structure from multilocus genotype data. Genetics, 155, 945–959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 23
    • 84902485214 scopus 로고    scopus 로고
    • fastSTRUCTURE: variational inference of population structure in large SNP data sets
    • Raj, A, Stephens, M., Jonathan, K. and Pritchard, J.K. (2014) fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics, 197, 573–589.
    • (2014) Genetics , vol.197 , pp. 573-589
    • Raj, A.1    Stephens, M.2    Jonathan, K.3    Pritchard, J.K.4
  • 24
    • 78649770973 scopus 로고    scopus 로고
    • Estimation of some genetic parameters using six populations of two cowpea hybrids
    • Rashwan, A.M.A. (2010) Estimation of some genetic parameters using six populations of two cowpea hybrids. Asia. J. Crop Sci. 2, 261–267.
    • (2010) Asia. J. Crop Sci. , vol.2 , pp. 261-267
    • Rashwan, A.M.A.1
  • 25
    • 84921947366 scopus 로고    scopus 로고
    • Patterns of genomic changes with crop domestication and breeding
    • Shi, J. and Lai, J. (2015) Patterns of genomic changes with crop domestication and breeding. Curr. Opin. Plant Biol. 24, 47–53.
    • (2015) Curr. Opin. Plant Biol. , vol.24 , pp. 47-53
    • Shi, J.1    Lai, J.2
  • 26
    • 2642573482 scopus 로고    scopus 로고
    • Recent genetic studies in cowpea
    • In, Fatokun, C.A., Tarawali, S.A., Singh, B.B., Kormawa, P.M., Tamo, M., eds), Ibadan, Nigeria, International Institute of Tropical Agriculture
    • Singh, B.B. (2002) Recent genetic studies in cowpea. In Challenges and Opportunities for Enhancing Sustainable Cowpea Production(Fatokun, C.A., Tarawali, S.A., Singh, B.B., Kormawa, P.M. and Tamo, M., eds), pp. 3–13. Ibadan, Nigeria: International Institute of Tropical Agriculture.
    • (2002) Challenges and Opportunities for Enhancing Sustainable Cowpea Production , pp. 3-13
    • Singh, B.B.1
  • 27
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J.D. (2002) A direct approach to false discovery rates. J. R. Stat. Soc. B, 64, 479–498.
    • (2002) J. R. Stat. Soc. B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 28
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, Evolutionary Distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. and Kumar, S. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, Evolutionary Distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731–2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 30
    • 0033815729 scopus 로고    scopus 로고
    • Construction of a genetic linkage map and QTL analysis using a recombinant inbred population derived from an intersubspecific cross of cowpea (Vigna unguiculata (L.) Walp.)
    • Ubi, B.E., Mignouna, H. and Thottappilly, G. (2000) Construction of a genetic linkage map and QTL analysis using a recombinant inbred population derived from an intersubspecific cross of cowpea (Vigna unguiculata (L.) Walp.). Breed. Sci. 50, 161–172.
    • (2000) Breed. Sci. , vol.50 , pp. 161-172
    • Ubi, B.E.1    Mignouna, H.2    Thottappilly, G.3
  • 31
    • 0030882466 scopus 로고    scopus 로고
    • Genetic analysis of yield and its components in vegetable cowpea (Vigna unguiculata L. Walp)
    • Umaharan, P., Ariyanayagam, R.P. and Haque, S.Q. (1997) Genetic analysis of yield and its components in vegetable cowpea (Vigna unguiculata L. Walp). Euphytica, 96, 207–213.
    • (1997) Euphytica , vol.96 , pp. 207-213
    • Umaharan, P.1    Ariyanayagam, R.P.2    Haque, S.Q.3
  • 32
    • 49249105137 scopus 로고    scopus 로고
    • The Arabidopsis sweetie mutant is affected in carbohydrate metabolism and defective in the control of growth, development and senescence
    • Veyres, N., Danon, A., Aono, M., Galliot, S., Karibasappa, Y.B., Diet, A., Grandmottet, F. et al. (2008) The Arabidopsis sweetie mutant is affected in carbohydrate metabolism and defective in the control of growth, development and senescence. Plant J. 55, 665–686.
    • (2008) Plant J. , vol.55 , pp. 665-686
    • Veyres, N.1    Danon, A.2    Aono, M.3    Galliot, S.4    Karibasappa, Y.B.5    Diet, A.6    Grandmottet, F.7
  • 33
    • 75549091729 scopus 로고    scopus 로고
    • Genetic variability and heritability of yield and related characters in yard-long bean
    • Vidya, C., Sunny, K., Oommen, S.K. and Kumar, V. (2002) Genetic variability and heritability of yield and related characters in yard-long bean. J. Trop. Agri. 40, 11–13.
    • (2002) J. Trop. Agri. , vol.40 , pp. 11-13
    • Vidya, C.1    Sunny, K.2    Oommen, S.K.3    Kumar, V.4
  • 35
    • 33644845428 scopus 로고    scopus 로고
    • Functional mapping – How to map and study the genetic architecture of dynamic complex traits
    • Wu, R. and Lin, M. (2006) Functional mapping – How to map and study the genetic architecture of dynamic complex traits. Nature Rev. Genet. 7, 229–737.
    • (2006) Nature Rev. Genet. , vol.7 , pp. 229-737
    • Wu, R.1    Lin, M.2
  • 36
    • 55449100528 scopus 로고    scopus 로고
    • Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph
    • Wu, Y., Bhat, P.R., Close, T.J. and Lonardi, S. (2008) Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph. PLoS Genet. 4, e1000212.
    • (2008) PLoS Genet. , vol.4
    • Wu, Y.1    Bhat, P.R.2    Close, T.J.3    Lonardi, S.4
  • 37
    • 77952421426 scopus 로고    scopus 로고
    • Development and polymorphism of Vigna unguiculata ssp. unguiculata microsatellite markers used for phylogenetic analysis in asparagus bean (Vigna unguiculata ssp. sesquipedialis. L. Verdc.)
    • Xu, P., Wu, X.H., Wang, B.G., Liu, Y.H., Qin, D.H., Ehlers, J.F., Close, T.J. et al. (2010) Development and polymorphism of Vigna unguiculata ssp. unguiculata microsatellite markers used for phylogenetic analysis in asparagus bean (Vigna unguiculata ssp. sesquipedialis. L. Verdc.). Mol. Breed. 25, 675–684.
    • (2010) Mol. Breed. , vol.25 , pp. 675-684
    • Xu, P.1    Wu, X.H.2    Wang, B.G.3    Liu, Y.H.4    Qin, D.H.5    Ehlers, J.F.6    Close, T.J.7
  • 38
    • 80051954623 scopus 로고    scopus 로고
    • Mapping genes governing flower and seed coat color in asparagus bean (Vigna unguiculata ssp sesquipedalis) based on SNP and SSR markers
    • Xu, P., Hu, T., Yang, Y., Wu, X., Wang, B., Liu, Y., Qin, D. et al. (2011a) Mapping genes governing flower and seed coat color in asparagus bean (Vigna unguiculata ssp sesquipedalis) based on SNP and SSR markers. HortScience, 46, 1102–1104.
    • (2011) HortScience , vol.46 , pp. 1102-1104
    • Xu, P.1    Hu, T.2    Yang, Y.3    Wu, X.4    Wang, B.5    Liu, Y.6    Qin, D.7
  • 39
    • 79251567940 scopus 로고    scopus 로고
    • A SNP and SSR based genetic map of asparagus bean (Vigna. unguiculata ssp. sesquipedialis) and comparison with the broader species
    • Xu, P., Wu, X.H., Wang, B.G., Liu, Y.H., Ehlers, J.D. and Close, T.J. (2011b) A SNP and SSR based genetic map of asparagus bean (Vigna. unguiculata ssp. sesquipedialis) and comparison with the broader species. PLoS ONE, 6, 1–8.
    • (2011) PLoS ONE , vol.6 , pp. 1-8
    • Xu, P.1    Wu, X.H.2    Wang, B.G.3    Liu, Y.H.4    Ehlers, J.D.5    Close, T.J.6
  • 40
    • 84863724095 scopus 로고    scopus 로고
    • Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna. unguiculata ssp. sesquipedialis) germplasm: implications for domestication history and genome wide association studies
    • Xu, P., Wu, X.H., Wang, B.G., Luo, J., Liu, Y.H., Ehlers, J.D., Close, T.J. et al. (2012) Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna. unguiculata ssp. sesquipedialis) germplasm: implications for domestication history and genome wide association studies. Heredity, 109, 34–40.
    • (2012) Heredity , vol.109 , pp. 34-40
    • Xu, P.1    Wu, X.H.2    Wang, B.G.3    Luo, J.4    Liu, Y.H.5    Ehlers, J.D.6    Close, T.J.7
  • 41
    • 84873033360 scopus 로고    scopus 로고
    • QTL mapping and epistatic interaction analysis in asparagus bean for several characterized and novel horticulturally important traits
    • Xu, P., Wu, X., Wang, B., Hu, T., Lu, Z., Liu, Y., Qin, D. et al. (2013) QTL mapping and epistatic interaction analysis in asparagus bean for several characterized and novel horticulturally important traits. BMC Genet. 14, 4.
    • (2013) BMC Genet. , vol.14 , pp. 4
    • Xu, P.1    Wu, X.2    Wang, B.3    Hu, T.4    Lu, Z.5    Liu, Y.6    Qin, D.7
  • 42
    • 84947418020 scopus 로고    scopus 로고
    • Natural variation and gene regulatory basis for the responses of asparagus beans to soil drought
    • Xu, P., Moshelion, M., Wu, X., Halperin, O., Wang, B., Luo, J., Wallach, R. et al. (2015) Natural variation and gene regulatory basis for the responses of asparagus beans to soil drought. Front. Plant Sci. 6, 891.
    • (2015) Front. Plant Sci. , vol.6 , pp. 891
    • Xu, P.1    Moshelion, M.2    Wu, X.3    Halperin, O.4    Wang, B.5    Luo, J.6    Wallach, R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.