-
1
-
-
84960193245
-
Clostridium difficile infection: Epidemiology, diagnosis and understanding transmission
-
26956066 Epub 2016/03/10
-
Martin JS, Monaghan TM, Wilcox MH. Clostridium difficile infection: epidemiology, diagnosis and understanding transmission. Nature reviews Gastroenterology & hepatology. 2016;13(4):206-16. Epub 2016/03/10. doi: 10.1038/nrgastro.2016.25 PMID: 26956066.
-
(2016)
Nature Reviews Gastroenterology & Hepatology
, vol.13
, Issue.4
, pp. 206-216
-
-
Martin, J.S.1
Monaghan, T.M.2
Wilcox, M.H.3
-
2
-
-
67649391053
-
Clostridium difficile infection: New developments in epidemiology and pathogenesis
-
19528959 Epub 2009/06/17
-
Rupnik M, Wilcox MH, Gerding DN. Clostridium difficile infection: new developments in epidemiology and pathogenesis. Nature reviews Microbiology. 2009;7(7):526-36. Epub 2009/06/17. doi: 10.1038/nrmicro2164 PMID: 19528959.
-
(2009)
Nature Reviews Microbiology
, vol.7
, Issue.7
, pp. 526-536
-
-
Rupnik, M.1
Wilcox, M.H.2
Gerding, D.N.3
-
3
-
-
84866460958
-
Clostridium difficile infection: Toxins and non-toxin virulence factors, and their contributions to disease establishment and host response
-
22555464 Epub 2012/05/05, PubMed Central, PMCID: PMC3370945
-
Vedantam G, Clark A, Chu M, McQuade R, Mallozzi M, Viswanathan VK. Clostridium difficile infection: toxins and non-toxin virulence factors, and their contributions to disease establishment and host response. Gut microbes. 2012;3(2):121-34. Epub 2012/05/05. doi: 10.4161/gmic.19399 PMID: 22555464; PubMed Central PMCID: PMC3370945.
-
(2012)
Gut Microbes
, vol.3
, Issue.2
, pp. 121-134
-
-
Vedantam, G.1
Clark, A.2
Chu, M.3
McQuade, R.4
Mallozzi, M.5
Viswanathan, V.K.6
-
4
-
-
84897824639
-
Community-acquired Clostridium difficile infection: An increasing public health threat
-
24669194 Epub 2014/03/29, PubMed Central, PMCID: PMC3962320
-
Gupta A, Khanna S. Community-acquired Clostridium difficile infection: an increasing public health threat. Infection and drug resistance. 2014;7:63-72. Epub 2014/03/29. doi: 10.2147/IDR. S46780 PMID: 24669194; PubMed Central PMCID: PMC3962320.
-
(2014)
Infection and Drug Resistance
, vol.7
, pp. 63-72
-
-
Gupta, A.1
Khanna, S.2
-
5
-
-
77957988127
-
The role of toxin A and toxin B in Clostridium difficile infection
-
20844489 Epub 2010/09/17
-
Kuehne SA, Cartman ST, Heap JT, Kelly ML, Cockayne A, Minton NP. The role of toxin A and toxin B in Clostridium difficile infection. Nature. 2010;467(7316):711-3. Epub 2010/09/17. doi: 10.1038/nature09397 PMID: 20844489.
-
(2010)
Nature
, vol.467
, Issue.7316
, pp. 711-713
-
-
Kuehne, S.A.1
Cartman, S.T.2
Heap, J.T.3
Kelly, M.L.4
Cockayne, A.5
Minton, N.P.6
-
6
-
-
79956275289
-
Clinical Clostridium difficile: Clonality and pathogenicity locus diversity
-
21625511 Epub 2011/06/01, PubMed Central, PMCID: PMC3098275
-
Dingle KE, Griffiths D, Didelot X, Evans J, Vaughan A, Kachrimanidou M, et al. Clinical Clostridium difficile: clonality and pathogenicity locus diversity. PloS one. 2011;6(5):e19993. Epub 2011/06/01. doi: 10.1371/journal.pone.0019993 PMID: 21625511; PubMed Central PMCID: PMC3098275.
-
(2011)
PloS One
, vol.6
, Issue.5
, pp. e19993
-
-
Dingle, K.E.1
Griffiths, D.2
Didelot, X.3
Evans, J.4
Vaughan, A.5
Kachrimanidou, M.6
-
7
-
-
0034607782
-
Production of actin-specific ADP-ribosyltransferase (binary toxin) by strains of Clostridium difficile
-
10802189 Epub 2000/05/10
-
Stubbs S, Rupnik M, Gibert M, Brazier J, Duerden B, Popoff M. Production of actin-specific ADP-ribosyltransferase (binary toxin) by strains of Clostridium difficile. Fems Microbiol Lett. 2000;186(2):307-12. Epub 2000/05/10. doi: 10.1111/j.1574-6968.2000.tb09122.x PMID: 10802189.
-
(2000)
Fems Microbiol Lett
, vol.186
, Issue.2
, pp. 307-312
-
-
Stubbs, S.1
Rupnik, M.2
Gibert, M.3
Brazier, J.4
Duerden, B.5
Popoff, M.6
-
8
-
-
80052882560
-
Multidrug resistance in European Clostridium difficile clinical isolates
-
21771851 Epub 2011/07/21
-
Spigaglia P, Barbanti F, Mastrantonio P. Multidrug resistance in European Clostridium difficile clinical isolates. The Journal of antimicrobial chemotherapy. 2011;66(10):2227-34. Epub 2011/07/21. doi: 10. 1093/jac/dkr292 PMID: 21771851.
-
(2011)
The Journal of Antimicrobial Chemotherapy
, vol.66
, Issue.10
, pp. 2227-2234
-
-
Spigaglia, P.1
Barbanti, F.2
Mastrantonio, P.3
-
9
-
-
84903612457
-
Clostridium difficile spore biology: Sporulation, germination, and spore structural proteins
-
24814671 Epub 2014/05/13, PubMed Central, PMCID: PMC4098856
-
Paredes-Sabja D, Shen A, Sorg JA. Clostridium difficile spore biology: sporulation, germination, and spore structural proteins. Trends in microbiology. 2014;22(7):406-16. Epub 2014/05/13. doi: 10.1016/j.tim.2014.04.003 PMID: 24814671; PubMed Central PMCID: PMC4098856.
-
(2014)
Trends in Microbiology
, vol.22
, Issue.7
, pp. 406-416
-
-
Paredes-Sabja, D.1
Shen, A.2
Sorg, J.A.3
-
10
-
-
79960237645
-
Epidemiology and control of Clostridium difficile infections in healthcare settings: An update
-
21505332 Epub 2011/04/21
-
Barbut F, Jones G, Eckert C. Epidemiology and control of Clostridium difficile infections in healthcare settings: an update. Current opinion in infectious diseases. 2011;24(4):370-6. Epub 2011/04/21. doi: 10.1097/QCO.0b013e32834748e5 PMID: 21505332.
-
(2011)
Current Opinion in Infectious Diseases
, vol.24
, Issue.4
, pp. 370-376
-
-
Barbut, F.1
Jones, G.2
Eckert, C.3
-
11
-
-
0028271412
-
Clostridium difficile-History of Its Role as an Enteric Pathogen and the Current State of Knowledge About the Organism
-
ISI:A1994NL75000006 8086574
-
Bartlett JG. Clostridium difficile-History of Its Role as an Enteric Pathogen and the Current State of Knowledge About the Organism. Clinical Infectious Diseases. 1994;18:S265-S72. doi: 10.1093/clinids/18. Supplement-4. S265 ISI:A1994NL75000006. PMID: 8086574
-
(1994)
Clinical Infectious Diseases
, vol.18
, pp. S265-S272
-
-
Bartlett, J.G.1
-
12
-
-
84884510020
-
Diverse sources of C. Difficile infection identified on whole-genome sequencing
-
24066741 Epub 2013/09/27, PubMed Central, PMCID: PMC3868928
-
Eyre DW, Cule ML, Wilson DJ, Griffiths D, Vaughan A, O'Connor L, et al. Diverse sources of C. difficile infection identified on whole-genome sequencing. The New England journal of medicine. 2013;369(13):1195-205. Epub 2013/09/27. doi: 10.1056/NEJMoa1216064 PMID: 24066741; PubMed Central PMCID: PMC3868928.
-
(2013)
The New England Journal of Medicine
, vol.369
, Issue.13
, pp. 1195-1205
-
-
Eyre, D.W.1
Cule, M.L.2
Wilson, D.J.3
Griffiths, D.4
Vaughan, A.5
O'Connor, L.6
-
13
-
-
84871366407
-
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
-
23259504 Epub 2012/12/25, PubMed Central, PMCID: PMC4056369
-
Didelot X, Eyre DW, Cule M, Ip CL, Ansari MA, Griffiths D, et al. Microevolutionary analysis of Clostridium difficile genomes to investigate transmission. Genome biology. 2012;13(12):R118. Epub 2012/12/25. doi: 10.1186/gb-2012-13-12-r118 PMID: 23259504; PubMed Central PMCID: PMC4056369.
-
(2012)
Genome Biology
, vol.13
, Issue.12
, pp. R118
-
-
Didelot, X.1
Eyre, D.W.2
Cule, M.3
Ip, C.L.4
Ansari, M.A.5
Griffiths, D.6
-
14
-
-
84864066855
-
Clostridium difficile in Dutch animals: Their presence, characteristics and similarities with human isolates
-
21919997 Epub 2011/09/17
-
Koene MG, Mevius D, Wagenaar JA, Harmanus C, Hensgens MP, Meetsma AM, et al. Clostridium difficile in Dutch animals: their presence, characteristics and similarities with human isolates. Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 2012;18(8):778-84. Epub 2011/09/17. doi: 10.1111/j.1469-0691.2011.03651.x PMID: 21919997.
-
(2012)
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases
, vol.18
, Issue.8
, pp. 778-784
-
-
Koene, M.G.1
Mevius, D.2
Wagenaar, J.A.3
Harmanus, C.4
Hensgens, M.P.5
Meetsma, A.M.6
-
15
-
-
85028730238
-
Whole genome sequencing reveals potential spread of Clostridium difficile between humans and farm animals in the Netherlands, 2002 to 2011
-
25411691 Epub 2014/11/21
-
Knetsch CW, Connor TR, Mutreja A, van Dorp SM, Sanders IM, Browne HP, et al. Whole genome sequencing reveals potential spread of Clostridium difficile between humans and farm animals in the Netherlands, 2002 to 2011. Euro surveillance: bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin. 2014;19(45):20954. Epub 2014/11/21. doi: 10.2807/1560-7917. ES2014.19.45.20954 PMID: 25411691.
-
(2014)
Euro Surveillance: Bulletin Europeen sur les Maladies Transmissibles = European Communicable Disease Bulletin
, vol.19
, Issue.45
, pp. 20954
-
-
Knetsch, C.W.1
Connor, T.R.2
Mutreja, A.3
Van Dorp, S.M.4
Sanders, I.M.5
Browne, H.P.6
-
17
-
-
84991502525
-
-
developed by Keith Jolley and sited at the University of Oxford Jolley & Maiden 2010, BMC Bioinformatics, 11:595. The development of this site has been funded by the Wellcome Trust
-
This publication made use of the Clostridium difficile Multi Locus Sequence Typing website (http://pubmlst.org/cdifficile) developed by Keith Jolley and sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595). The development of this site has been funded by the Wellcome Trust.
-
This Publication Made use of the Clostridium Difficile Multi Locus Sequence Typing Website
-
-
-
18
-
-
84991471365
-
-
U. S. Census Bureau;, cited 2015 7/10/2015
-
Bureau USC. Flagstaff, AZ. Population, 2013 estimate: U. S. Census Bureau; 2013 [cited 2015 7/10/2015]. Available from: http://quickfacts.census.gov/qfd/states/04/0423620.html.
-
(2013)
Population, 2013 Estimate
-
-
Bureau, U.S.C.1
Flagstaff, A.Z.2
-
19
-
-
84872822741
-
A systematic evaluation of methods to optimize culture-based recovery of Clostridium difficile from stool specimens
-
23247066 Epub 2012/12/19, PubMed Central, PMCID: PMC4146438
-
Hink T, Burnham CA, Dubberke ER. A systematic evaluation of methods to optimize culture-based recovery of Clostridium difficile from stool specimens. Anaerobe. 2013;19:39-43. Epub 2012/12/19. doi: 10.1016/j.anaerobe.2012.12.001 PMID: 23247066; PubMed Central PMCID: PMC4146438.
-
(2013)
Anaerobe
, vol.19
, pp. 39-43
-
-
Hink, T.1
Burnham, C.A.2
Dubberke, E.R.3
-
20
-
-
84859782215
-
BactQuant: An enhanced broad-coverage bacterial quantitative real-time PCR assay
-
22510143 Epub 2012/04/19, PubMed Central, PMCID: PMC3464140
-
Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, et al. BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. BMC microbiology. 2012;12:56. Epub 2012/04/19. doi: 10.1186/1471-2180-12-56 PMID: 22510143; PubMed Central PMCID: PMC3464140.
-
(2012)
BMC Microbiology
, vol.12
, pp. 56
-
-
Liu, C.M.1
Aziz, M.2
Kachur, S.3
Hsueh, P.R.4
Huang, Y.T.5
Keim, P.6
-
21
-
-
84897949482
-
The large-scale blast score ratio (LS-BSR) pipeline: A method to rapidly compare genetic content between bacterial genomes
-
24749011
-
Sahl JW, Caporaso JG, Rasko DA, Keim P. The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PeerJ 2014;2:e332. doi: 10. 7717/peerj.332 PMID: 24749011
-
(2014)
PeerJ
, vol.2
, pp. e332
-
-
Sahl, J.W.1
Caporaso, J.G.2
Rasko, D.A.3
Keim, P.4
-
23
-
-
84897966921
-
Culturing and maintaining Clostridium difficile in an anaerobic environment
-
24084491 Epub 2013/10/03, PubMed Central, PMCID: PMC3871928
-
Edwards AN, Suarez JM, McBride SM. Culturing and maintaining Clostridium difficile in an anaerobic environment. Journal of visualized experiments: JoVE. 2013; (79:): e50787. Epub 2013/10/03. doi: 10. 3791/50787 PMID: 24084491; PubMed Central PMCID: PMC3871928.
-
(2013)
Journal of Visualized Experiments: JoVE
, Issue.79
, pp. e50787
-
-
Edwards, A.N.1
Suarez, J.M.2
McBride, S.M.3
-
24
-
-
34548487752
-
Spread and epidemiology of Clostridium difficile polymerase chain reaction ribotype 027/toxinotype III in The Netherlands
-
17712752 Epub 2007/08/23
-
Goorhuis A, Van der Kooi T, Vaessen N, Dekker FW, Van den Berg R, Harmanus C, et al. Spread and epidemiology of Clostridium difficile polymerase chain reaction ribotype 027/toxinotype III in The Netherlands. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America. 2007;45(6):695-703. Epub 2007/08/23. doi: 10.1086/520984 PMID: 17712752.
-
(2007)
Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America
, vol.45
, Issue.6
, pp. 695-703
-
-
Goorhuis, A.1
Van Der Kooi, T.2
Vaessen, N.3
Dekker, F.W.4
Van Den Berg, R.5
Harmanus, C.6
-
25
-
-
79952404778
-
Multihospital outbreak of Clostridium difficile ribotype 027 infection: Epidemiology and analysis of control measures
-
21460505 Epub 2011/04/05
-
Aldeyab MA, Devine MJ, Flanagan P, Mannion M, Craig A, Scott MG, et al. Multihospital outbreak of Clostridium difficile ribotype 027 infection: epidemiology and analysis of control measures. Infection control and hospital epidemiology. 2011;32(3):210-9. Epub 2011/04/05. doi: 10.1086/658333 PMID: 21460505.
-
(2011)
Infection Control and Hospital Epidemiology
, vol.32
, Issue.3
, pp. 210-219
-
-
Aldeyab, M.A.1
Devine, M.J.2
Flanagan, P.3
Mannion, M.4
Craig, A.5
Scott, M.G.6
-
26
-
-
84892524901
-
Evolutionary history of the Clostridium difficile pathogenicity locus
-
24336451 Epub 2013/12/18, PubMed Central, PMCID: PMC3914685
-
Dingle KE, Elliott B, Robinson E, Griffiths D, Eyre DW, Stoesser N, et al. Evolutionary history of the Clostridium difficile pathogenicity locus. Genome biology and evolution. 2014;6(1):36-52. Epub 2013/12/18. doi: 10.1093/gbe/evt204 PMID: 24336451; PubMed Central PMCID: PMC3914685.
-
(2014)
Genome Biology and Evolution
, vol.6
, Issue.1
, pp. 36-52
-
-
Dingle, K.E.1
Elliott, B.2
Robinson, E.3
Griffiths, D.4
Eyre, D.W.5
Stoesser, N.6
-
27
-
-
77749255991
-
Multilocus sequence typing of Clostridium difficile
-
20042623 Epub 2010/01/01, PubMed Central, PMCID: PMC2832416
-
Griffiths D, Fawley W, Kachrimanidou M, Bowden R, Crook DW, Fung R, et al. Multilocus sequence typing of Clostridium difficile. Journal of clinical microbiology. 2010;48(3):770-8. Epub 2010/01/01. doi: 10.1128/JCM.01796-09 PMID: 20042623; PubMed Central PMCID: PMC2832416.
-
(2010)
Journal of Clinical Microbiology
, vol.48
, Issue.3
, pp. 770-778
-
-
Griffiths, D.1
Fawley, W.2
Kachrimanidou, M.3
Bowden, R.4
Crook, D.W.5
Fung, R.6
-
28
-
-
84907144257
-
Survival of Clostridium difficile spores at low temperatures
-
ISI:000345992200029. 25475288
-
Deng K, Plaza-Garrido A, Torres JA, Paredes-Sabja D. Survival of Clostridium difficile spores at low temperatures. Food Microbiol. 2015;46:218-21. doi: 10.1016/j.fm.2014.07.022. ISI:000345992200029. PMID: 25475288
-
(2015)
Food Microbiol
, vol.46
, pp. 218-221
-
-
Deng, K.1
Plaza-Garrido, A.2
Torres, J.A.3
Paredes-Sabja, D.4
-
29
-
-
84902193822
-
Differing populations of endemic bacteriophages in cattle shedding high and low numbers of Escherichia coli O157:H7 bacteria in feces
-
24747892 Epub 2014/04/22, PubMed Central, PMCID: PMC4054202
-
Hallewell J, Niu YD, Munns K, McAllister TA, Johnson RP, Ackermann HW, et al. Differing populations of endemic bacteriophages in cattle shedding high and low numbers of Escherichia coli O157:H7 bacteria in feces. Applied and environmental microbiology. 2014;80(13):3819-25. Epub 2014/04/22. doi: 10.1128/AEM.00708-14 PMID: 24747892; PubMed Central PMCID: PMC4054202.
-
(2014)
Applied and Environmental Microbiology
, vol.80
, Issue.13
, pp. 3819-3825
-
-
Hallewell, J.1
Niu, Y.D.2
Munns, K.3
McAllister, T.A.4
Johnson, R.P.5
Ackermann, H.W.6
-
30
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
21546353 Epub 2011/05/07, PubMed Central, PMCID: PMC3203626
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular biology and evolution. 2011;28(10):2731-9. Epub 2011/05/07. doi: 10.1093/molbev/msr121 PMID: 21546353; PubMed Central PMCID: PMC3203626.
-
(2011)
Molecular Biology and Evolution
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
31
-
-
84958846392
-
Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years
-
26870786 Epub 2016/02/13, PubMed Central, PMCID: PMC4740342
-
Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, et al. Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. EBioMedicine. 2015;2(11):1613-8. Epub 2016/02/13. doi: 10.1016/j.ebiom.2015.10.004 PMID: 26870786; PubMed Central PMCID: PMC4740342.
-
(2015)
EBioMedicine
, vol.2
, Issue.11
, pp. 1613-1618
-
-
Keim, P.1
Grunow, R.2
Vipond, R.3
Grass, G.4
Hoffmaster, A.5
Birdsell, D.N.6
-
32
-
-
84855295457
-
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
-
ISI:000298733500003. 22021376
-
Kircher M, Sawyer S, Meyer M. Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Res. 2012;40(1). Artn E3 doi: 10.1093/Nar/Gkr771. ISI:000298733500003. PMID: 22021376
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.1
-
-
Kircher, M.1
Sawyer, S.2
Meyer, M.3
-
33
-
-
79960044932
-
96-Plex Molecular Barcoding for the Illumina Genome Analyzer
-
ISI:000289444000020. 21431778
-
Kozarewa I, Turner DJ. 96-Plex Molecular Barcoding for the Illumina Genome Analyzer. Methods Mol Biol. 2011;733:279-98. doi: 10.1007/978-1-61779-089-8-20. ISI:000289444000020. PMID: 21431778
-
(2011)
Methods Mol Biol
, vol.733
, pp. 279-298
-
-
Kozarewa, I.1
Turner, D.J.2
-
35
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
21478889 Epub 2011/04/12, PubMed Central, PMCID: PMC3083463
-
De Pristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011;43(5):491-8. Epub 2011/04/12. doi: 10.1038/ng.806 PMID: 21478889; PubMed Central PMCID: PMC3083463.
-
(2011)
Nat Genet
, vol.43
, Issue.5
, pp. 491-498
-
-
De Pristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
-
36
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
20644199 Epub 2010/07/21, PubMed Central, PMCID: PMC2928508
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research. 2010;20(9):1297-303. Epub 2010/07/21. doi: 10.1101/gr.107524.110 PMID: 20644199; PubMed Central PMCID: PMC2928508.
-
(2010)
Genome Research
, vol.20
, Issue.9
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
-
37
-
-
43349091544
-
Using MUMmer to identify similar regions in large sequence sets
-
18428693 Chapter 10:Unit 10 3, Epub 2008/04/23
-
Delcher AL, Salzberg SL, Phillippy AM. Using MUMmer to identify similar regions in large sequence sets. Curr Protoc Bioinformatics. 2003; Chapter 10:Unit 10 3. Epub 2008/04/23. doi: 10.1002/0471250953.bi1003s00 PMID: 18428693.
-
(2003)
Curr Protoc Bioinformatics
-
-
Delcher, A.L.1
Salzberg, S.L.2
Phillippy, A.M.3
-
38
-
-
84988607796
-
The Northern Arizona SNP Pipeline (NASP): Accurate, flexible, and rapid identification of SNPs in WGS datasets
-
Sahl JW, Lemmer D, Travis J, Schupp J, Gillece J, Aziz M, et al. The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets. bioRxiv. 2016. http://dx. doi.org/10.1101/037267.
-
(2016)
BioRxiv
-
-
Sahl, J.W.1
Lemmer, D.2
Travis, J.3
Schupp, J.4
Gillece, J.5
Aziz, M.6
-
39
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
24451623 Epub 2014/01/24
-
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014. Epub 2014/01/24. doi: 10.1093/bioinformatics/btu033 PMID: 24451623.
-
(2014)
Bioinformatics
-
-
Stamatakis, A.1
-
40
-
-
79951548848
-
Phangorn: Phylogenetic analysis in R
-
21169378 Epub 2010/12/21, PubMed Central, PMCID: PMC3035803
-
Schliep KP. phangorn: phylogenetic analysis in R. Bioinformatics. 2011;27(4):592-3. Epub 2010/12/21. doi: 10.1093/bioinformatics/btq706 PMID: 21169378; PubMed Central PMCID: PMC3035803.
-
(2011)
Bioinformatics
, vol.27
, Issue.4
, pp. 592-593
-
-
Schliep, K.P.1
-
41
-
-
33745550745
-
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
-
16804543 Epub 2006/06/29
-
Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, Stabler R, et al. The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nature genetics. 2006;38(7):779-86. Epub 2006/06/29. doi: 10.1038/ng1830 PMID: 16804543.
-
(2006)
Nature Genetics
, vol.38
, Issue.7
, pp. 779-786
-
-
Sebaihia, M.1
Wren, B.W.2
Mullany, P.3
Fairweather, N.F.4
Minton, N.5
Stabler, R.6
-
42
-
-
13244252316
-
Visualization of comparative genomic analyses by BLAST score ratio
-
15634352 Epub 2005/01/07, 1471-2105-6-2 [pii] PubMed Central, PMCID: PMC545078
-
Rasko DA, Myers GS, Ravel J. Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics. 2005;6:2. Epub 2005/01/07. 1471-2105-6-2 [pii] doi: 10.1186/1471-2105-6-2 PMID: 15634352; PubMed Central PMCID: PMC545078.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 2
-
-
Rasko, D.A.1
Myers, G.S.2
Ravel, J.3
-
43
-
-
34250660545
-
Prevalence of PCR ribotypes among Clostridium difficile isolates from pigs, calves, and other species
-
ISI:000247286500044. 17428945
-
Keel K, Brazier JS, Post KW, Weese S, Songer JG. Prevalence of PCR ribotypes among Clostridium difficile isolates from pigs, calves, and other species. Journal of clinical microbiology. 2007;45(6):1963-4. doi: 10.1128/Jcm.00224-07. ISI:000247286500044. PMID: 17428945
-
(2007)
Journal of Clinical Microbiology
, vol.45
, Issue.6
, pp. 1963-1964
-
-
Keel, K.1
Brazier, J.S.2
Post, K.W.3
Weese, S.4
Songer, J.G.5
-
44
-
-
15544374402
-
PCR ribotyping of Clostridium difficile isolates originating from human and animal sources
-
ISI:000227083300011. 15673511
-
Arroyo LG, Kruth SA, Willey BM, Staempfli HR, Low DE, Weese JS. PCR ribotyping of Clostridium difficile isolates originating from human and animal sources. J Med Microbiol. 2005;54(2):163-6. doi: 10. 1099/jmm.0.45805-0. ISI:000227083300011. PMID: 15673511
-
(2005)
J Med Microbiol
, vol.54
, Issue.2
, pp. 163-166
-
-
Arroyo, L.G.1
Kruth, S.A.2
Willey, B.M.3
Staempfli, H.R.4
Low, D.E.5
Weese, J.S.6
-
45
-
-
84902899123
-
International Clostridium difficile animal strain collection and large diversity of animal associated strains
-
24972659 Epub 2014/06/29, PubMed Central, PMCID: PMC4100527
-
Janezic S, Zidaric V, Pardon B, Indra A, Kokotovic B, Blanco JL, et al. International Clostridium difficile animal strain collection and large diversity of animal associated strains. BMC microbiology. 2014;14:173. Epub 2014/06/29. doi: 10.1186/1471-2180-14-173 PMID: 24972659; PubMed Central PMCID: PMC4100527.
-
(2014)
BMC Microbiology
, vol.14
, pp. 173
-
-
Janezic, S.1
Zidaric, V.2
Pardon, B.3
Indra, A.4
Kokotovic, B.5
Blanco, J.L.6
-
46
-
-
84956928899
-
Distribution and characterization of Clostridium difficile isolated from dogs in Japan
-
26456188 Epub 2015/10/13
-
Usui M, Suzuki K, Oka K, Miyamoto K, Takahashi M, Inamatsu T, et al. Distribution and characterization of Clostridium difficile isolated from dogs in Japan. Anaerobe. 2016;37:58-61. Epub 2015/10/13. doi: 10.1016/j.anaerobe.2015.10.002 PMID: 26456188.
-
(2016)
Anaerobe
, vol.37
, pp. 58-61
-
-
Usui, M.1
Suzuki, K.2
Oka, K.3
Miyamoto, K.4
Takahashi, M.5
Inamatsu, T.6
-
47
-
-
84942514450
-
Isolation and characterization of Clostridium difficile from pet dogs in Assam, India
-
26393292 Epub 2015/09/24
-
Hussain I, Sharma RK, Borah P, Rajkhowa S, Barkalita LM, Hasin D, et al. Isolation and characterization of Clostridium difficile from pet dogs in Assam, India. Anaerobe. 2015;36:9-13. Epub 2015/09/24. doi: 10.1016/j.anaerobe.2015.09.006 PMID: 26393292.
-
(2015)
Anaerobe
, vol.36
, pp. 9-13
-
-
Hussain, I.1
Sharma, R.K.2
Borah, P.3
Rajkhowa, S.4
Barkalita, L.M.5
Hasin, D.6
-
48
-
-
84991438835
-
-
cited 2016 June 1. Global statistics on pet ownership
-
PetSecure. 2016 [cited 2016 June 1]. Global statistics on pet ownership]. Available from: http://www.petsecure.com.au/pet-care/a-guide-to-worldwide-pet-ownership/.
-
(2016)
PetSecure
-
-
-
49
-
-
41949117132
-
Prevalence and risk factors for Clostridium difficile colonization in dogs and cats hospitalized in an intensive care unit
-
ISI:000255990700023. 18164560
-
Clooten J, Kruth S, Arroyo L, Weese JS. Prevalence and risk factors for Clostridium difficile colonization in dogs and cats hospitalized in an intensive care unit. Vet Microbiol. 2008;129(1-2):209-14. doi: 10.1016/j.vetmic.2007.11.013. ISI:000255990700023. PMID: 18164560
-
(2008)
Vet Microbiol
, vol.129
, Issue.1-2
, pp. 209-214
-
-
Clooten, J.1
Kruth, S.2
Arroyo, L.3
Weese, J.S.4
-
50
-
-
12144284570
-
A hospital outbreak of Clostridium difficile disease associated with isolates carrying binary toxin genes
-
15655746 Epub 2005/01/19
-
McEllistrem MC, Carman RJ, Gerding DN, Genheimer CW, Zheng L. A hospital outbreak of Clostridium difficile disease associated with isolates carrying binary toxin genes. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America. 2005;40(2):265-72. Epub 2005/01/19. doi: 10.1086/427113 PMID: 15655746.
-
(2005)
Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America
, vol.40
, Issue.2
, pp. 265-272
-
-
McEllistrem, M.C.1
Carman, R.J.2
Gerding, D.N.3
Genheimer, C.W.4
Zheng, L.5
-
51
-
-
0344120340
-
Binary toxin producing Clostridium difficile strains
-
16887714 Epub 2006/08/05
-
Rupnik M, Grabnar M, Geric B. Binary toxin producing Clostridium difficile strains. Anaerobe. 2003;9(6):289-94. Epub 2006/08/05. doi: 10.1016/j.anaerobe.2003.09.002 PMID: 16887714.
-
(2003)
Anaerobe
, vol.9
, Issue.6
, pp. 289-294
-
-
Rupnik, M.1
Grabnar, M.2
Geric, B.3
-
52
-
-
84949535876
-
Role of binary toxin in the outcome of Clostridium difficile infection in a non-027 ribotype setting-CORRIGENDUM
-
27312805 Epub 2016/06/18
-
Reigadas E, Alcala L, Marin M, Martin A, Iglesias C, Bouza E. Role of binary toxin in the outcome of Clostridium difficile infection in a non-027 ribotype setting-CORRIGENDUM. Epidemiology and infection. 2016;144(12):2691. Epub 2016/06/18. doi: 10.1017/S0950268816001096 PMID: 27312805.
-
(2016)
Epidemiology and Infection
, vol.144
, Issue.12
, pp. 2691
-
-
Reigadas, E.1
Alcala, L.2
Marin, M.3
Martin, A.4
Iglesias, C.5
Bouza, E.6
-
53
-
-
84555188050
-
Clostridium difficile mixed infection and reinfection
-
22075589 Epub 2011/11/15, PubMed Central, PMCID: PMC3256686
-
Eyre DW, Walker AS, Griffiths D, Wilcox MH, Wyllie DH, Dingle KE, et al. Clostridium difficile mixed infection and reinfection. Journal of clinical microbiology. 2012;50(1):142-4. Epub 2011/11/15. doi: 10.1128/JCM.05177-11 PMID: 22075589; PubMed Central PMCID: PMC3256686.
-
(2012)
Journal of Clinical Microbiology
, vol.50
, Issue.1
, pp. 142-144
-
-
Eyre, D.W.1
Walker, A.S.2
Griffiths, D.3
Wilcox, M.H.4
Wyllie, D.H.5
Dingle, K.E.6
-
54
-
-
65549165914
-
What antimicrobial resistance has taught us about horizontal gene transfer
-
19271198 Epub 2009/03/10
-
Barlow M. What antimicrobial resistance has taught us about horizontal gene transfer. Methods Mol Biol. 2009;532:397-411. Epub 2009/03/10. doi: 10.1007/978-1-60327-853-9-23 PMID: 19271198.
-
(2009)
Methods Mol Biol
, vol.532
, pp. 397-411
-
-
Barlow, M.1
|