메뉴 건너뛰기




Volumn 1, Issue 6, 2016, Pages

Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL GENOME; FUNGAL MATING TYPE GENE; GENE FREQUENCY; GENETIC RECOMBINATION; GENETIC VARIATION; GENETICS; GENOMICS; MOLECULAR EVOLUTION; MYCORRHIZA; PHYLOGENY; PHYSIOLOGY;

EID: 84991325364     PISSN: None     EISSN: 20585276     Source Type: Journal    
DOI: 10.1038/nmicrobiol.2016.33     Document Type: Article
Times cited : (109)

References (67)
  • 1
    • 0035856959 scopus 로고    scopus 로고
    • Evidence for the evolution of multiple genomes in arbuscular mycorrhizal fungi
    • Kuhn, G., Hijri, M. & Sanders, I. R. Evidence for the evolution of multiple genomes in arbuscular mycorrhizal fungi. Nature 414, 742-745 (2001).
    • (2001) Nature , vol.414 , pp. 742-745
    • Kuhn, G.1    Hijri, M.2    Sanders, I.R.3
  • 2
    • 84890285092 scopus 로고    scopus 로고
    • Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
    • Tisserant, E. et al. Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proc. Natl Acad. Sci. USA 110, 20117-20122 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 20117-20122
    • Tisserant, E.1
  • 3
    • 84893748588 scopus 로고    scopus 로고
    • Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus
    • Lin, K. et al. Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus. PLoS Genet. 10, e1004078 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004078
    • Lin, K.1
  • 5
    • 15844412621 scopus 로고    scopus 로고
    • Sex increases the efficacy of natural selection in experimental yeast populations
    • Goddard, M. R., Godfray, H. C. J. & Burt, A. Sex increases the efficacy of natural selection in experimental yeast populations. Nature 434, 636-640 (2005).
    • (2005) Nature , vol.434 , pp. 636-640
    • Goddard, M.R.1    Godfray, H.C.J.2    Burt, A.3
  • 6
    • 0036203924 scopus 로고    scopus 로고
    • The costs and benefits of sex: New insights from old asexual lineages
    • Butlin, R. The costs and benefits of sex: new insights from old asexual lineages. Nature Rev. Genet. 3, 311-317 (2002).
    • (2002) Nature Rev. Genet. , vol.3 , pp. 311-317
    • Butlin, R.1
  • 7
    • 0030434701 scopus 로고    scopus 로고
    • Evolutionary trends in root-microbe symbioses
    • Fitter, A. H. & Moyersoen, B. Evolutionary trends in root-microbe symbioses. Phil. Trans. R. Soc. Lond. B 351, 1367-1375 (1996).
    • (1996) Phil. Trans. R. Soc. Lond. B , vol.351 , pp. 1367-1375
    • Fitter, A.H.1    Moyersoen, B.2
  • 8
    • 0035839062 scopus 로고    scopus 로고
    • Molecular evidence for the early colonization of land by fungi and plants
    • Heckman, D. S. et al. Molecular evidence for the early colonization of land by fungi and plants. Science 293, 1129-1133 (2001).
    • (2001) Science , vol.293 , pp. 1129-1133
    • Heckman, D.S.1
  • 9
    • 84937132978 scopus 로고    scopus 로고
    • Genome diversity in arbuscular mycorrhizal fungi
    • Young, J. P. W. Genome diversity in arbuscular mycorrhizal fungi. Curr. Opin. Plant Biol. 26, 113-119 (2015).
    • (2015) Curr. Opin. Plant Biol. , vol.26 , pp. 113-119
    • Young, J.P.W.1
  • 10
    • 84928242528 scopus 로고    scopus 로고
    • Studying genome heterogeneity within the arbuscular mycorrhizal fungal cytoplasm
    • Boon, E., Halary, S., Bapteste, E. & Hijri, M. Studying genome heterogeneity within the arbuscular mycorrhizal fungal cytoplasm. Genome Biol. Evol. 7, 505-521 (2015).
    • (2015) Genome Biol. Evol. , vol.7 , pp. 505-521
    • Boon, E.1    Halary, S.2    Bapteste, E.3    Hijri, M.4
  • 11
    • 54049101675 scopus 로고    scopus 로고
    • Multilocus genotyping of arbuscular mycorrhizal fungi and marker suitability for population genetics
    • Croll, D., Corradi, N., Gamper, H. A. & Sanders, I. R. Multilocus genotyping of arbuscular mycorrhizal fungi and marker suitability for population genetics. New Phytol. 180, 564-568 (2008).
    • (2008) New Phytol. , vol.180 , pp. 564-568
    • Croll, D.1    Corradi, N.2    Gamper, H.A.3    Sanders, I.R.4
  • 12
    • 70349493062 scopus 로고    scopus 로고
    • Changes in arbuscular mycorrhizal fungal phenotypes and genotypes in response to plant species identity and phosphorus concentration
    • Ehinger, M., Koch, A. M. & Sanders, I. R. Changes in arbuscular mycorrhizal fungal phenotypes and genotypes in response to plant species identity and phosphorus concentration. New Phytol. 184, 412-423 (2009).
    • (2009) New Phytol. , vol.184 , pp. 412-423
    • Ehinger, M.1    Koch, A.M.2    Sanders, I.R.3
  • 13
    • 84945436842 scopus 로고    scopus 로고
    • Homokaryotic vs heterokaryotic mycelium in arbuscular mycorrhizal fungi: Different techniques, different results?
    • Ropars, J. & Corradi, N. Homokaryotic vs heterokaryotic mycelium in arbuscular mycorrhizal fungi: different techniques, different results? New Phytol. 208, 638-641 (2015).
    • (2015) New Phytol. , vol.208 , pp. 638-641
    • Ropars, J.1    Corradi, N.2
  • 14
    • 78149457992 scopus 로고    scopus 로고
    • Arbuscular mycorrhiza: The challenge to understand the genetics of the fungal partner
    • Sanders, I. R. & Croll, D. Arbuscular mycorrhiza: the challenge to understand the genetics of the fungal partner. Annu. Rev. Genet. 44, 271-292 (2010).
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 271-292
    • Sanders, I.R.1    Croll, D.2
  • 15
    • 84871800111 scopus 로고    scopus 로고
    • Searching for clues of sexual reproduction in the genomes of arbuscular mycorrhizal fungi
    • Riley, R. & Corradi, N. Searching for clues of sexual reproduction in the genomes of arbuscular mycorrhizal fungi. Fungal Ecol. 6, 44-49 (2013).
    • (2013) Fungal Ecol. , vol.6 , pp. 44-49
    • Riley, R.1    Corradi, N.2
  • 17
    • 0031888793 scopus 로고    scopus 로고
    • Molecular genetics of mating recognition in basidiomycete fungi
    • Casselton, L. A. & Olesnicky, N. S. Molecular genetics of mating recognition in basidiomycete fungi. Microbiol. Mol. Biol. Rev. 62, 55-70 (1998).
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 55-70
    • Casselton, L.A.1    Olesnicky, N.S.2
  • 19
    • 0033063281 scopus 로고    scopus 로고
    • Mating system of the filamentous ascomycete, glomerella cingulata
    • Cisar, C. R. & TeBeest, D. O. Mating system of the filamentous ascomycete, Glomerella cingulata. Curr. Genet. 35, 127-133 (1999).
    • (1999) Curr. Genet. , vol.35 , pp. 127-133
    • Cisar, C.R.1    TeBeest, D.O.2
  • 20
    • 84876704413 scopus 로고    scopus 로고
    • Genome analyses of the wheat yellow (stripe) rust pathogen puccinia striiformis f. Sp. Tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors
    • Cantu, D. et al. Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics 14, 270 (2013).
    • (2013) BMC Genomics , vol.14 , pp. 270
    • Cantu, D.1
  • 21
    • 81055155980 scopus 로고    scopus 로고
    • Estimation of the glomus intraradices nuclear DNA content
    • Sȩdzielewska, K. A. et al. Estimation of the Glomus intraradices nuclear DNA content. New Phytol. 192, 794-797 (2011).
    • (2011) New Phytol. , vol.192 , pp. 794-797
    • Sȩdzielewska, K.A.1
  • 22
    • 0028835718 scopus 로고
    • An N-terminal dimerization domain permits homeodomain proteins to choose compatible partners and initiate sexual development in the mushroom coprinus cinereus
    • Banham, A. H. et al. An N-terminal dimerization domain permits homeodomain proteins to choose compatible partners and initiate sexual development in the mushroom Coprinus cinereus. Plant Cell 7, 773-783 (1995).
    • (1995) Plant Cell , vol.7 , pp. 773-783
    • Banham, A.H.1
  • 23
    • 67649845784 scopus 로고    scopus 로고
    • Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs
    • Kosugi, S., Hasebe, M., Tomita, M. & Yanagawa, H. Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc. Natl Acad. Sci. USA 106, 10171-10176 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 10171-10176
    • Kosugi, S.1    Hasebe, M.2    Tomita, M.3    Yanagawa, H.4
  • 24
    • 84896738010 scopus 로고    scopus 로고
    • Mating type gene homologues and putative sex pheromonesensing pathway in arbuscular mycorrhizal fungi, a presumably asexual plant root symbiont
    • Halary, S. et al. Mating type gene homologues and putative sex pheromonesensing pathway in arbuscular mycorrhizal fungi, a presumably asexual plant root symbiont. PLoS ONE 8, e80729 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e80729
    • Halary, S.1
  • 25
    • 79953189717 scopus 로고    scopus 로고
    • Phosphate transporter genes as reliable gene markers for the identification and discrimination of arbuscular mycorrhizal fungi in the genus glomus
    • Sokolski, S., Dalpé, Y. & Piché, Y. Phosphate transporter genes as reliable gene markers for the identification and discrimination of arbuscular mycorrhizal fungi in the genus Glomus. Appl. Environ. Microbiol. 77, 1888-1891 (2011).
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 1888-1891
    • Sokolski, S.1    Dalpé, Y.2    Piché, Y.3
  • 26
    • 33745155384 scopus 로고    scopus 로고
    • Evolution of the P-type II ATPase gene family in the fungi and presence of structural genomic changes among isolates of glomus intraradices
    • Corradi, N. & Sanders, I. R. Evolution of the P-type II ATPase gene family in the fungi and presence of structural genomic changes among isolates of Glomus intraradices. BMC Evol. Biol. 6, 21 (2006).
    • (2006) BMC Evol. Biol. , vol.6 , pp. 21
    • Corradi, N.1    Sanders, I.R.2
  • 27
    • 63849265730 scopus 로고    scopus 로고
    • High-level molecular diversity of copper-zinc superoxide dismutase genes among and within species of arbuscular mycorrhizal fungi
    • Corradi, N. et al. High-level molecular diversity of copper-zinc superoxide dismutase genes among and within species of arbuscular mycorrhizal fungi. Appl. Environ. Microbiol. 75, 1970-1978 (2009).
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 1970-1978
    • Corradi, N.1
  • 28
    • 4644311423 scopus 로고    scopus 로고
    • Arbuscular mycorrhizal fungi (Glomeromycota) harbour ancient fungal tubulin genes that resemble those of the chytrids (Chytridiomycota)
    • Corradi, N., Hijri, M., Fumagalli, L. & Sanders, I. R. Arbuscular mycorrhizal fungi (Glomeromycota) harbour ancient fungal tubulin genes that resemble those of the chytrids (Chytridiomycota). Fungal Genet. Biol. 41, 1037-1045 (2004).
    • (2004) Fungal Genet. Biol. , vol.41 , pp. 1037-1045
    • Corradi, N.1    Hijri, M.2    Fumagalli, L.3    Sanders, I.R.4
  • 29
    • 61549121055 scopus 로고    scopus 로고
    • Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes
    • Devier, B., Aguileta, G., Hood, M. E. & Giraud, T. Ancient trans-specific polymorphism at pheromone receptor genes in basidiomycetes. Genetics 181, 209-223 (2008).
    • (2008) Genetics , vol.181 , pp. 209-223
    • Devier, B.1    Aguileta, G.2    Hood, M.E.3    Giraud, T.4
  • 31
    • 0036617021 scopus 로고    scopus 로고
    • Intra- and intersporal diversity of ITS rDNA sequences in glomus intraradices assessed by cloning and sequencing, and by SSCP analysis
    • Jansa, J., Mozafar, A., Banke, S., McDonald, B. A. & Frossard, E. Intra- and intersporal diversity of ITS rDNA sequences in Glomus intraradices assessed by cloning and sequencing, and by SSCP analysis. Mycol. Res. 106, 670-681 (2002).
    • (2002) Mycol. Res. , vol.106 , pp. 670-681
    • Jansa, J.1    Mozafar, A.2    Banke, S.3    McDonald, B.A.4    Frossard, E.5
  • 32
    • 84860771820 scopus 로고    scopus 로고
    • SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
    • Bankevich, A. et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477 (2012).
    • (2012) J. Comput. Biol. , vol.19 , pp. 455-477
    • Bankevich, A.1
  • 34
    • 84891349005 scopus 로고    scopus 로고
    • Informed and automated k-mer size selection for genome assembly
    • Chikhi, R. & Medvedev, P. Informed and automated k-mer size selection for genome assembly. Bioinformatics 30, 31-37 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 31-37
    • Chikhi, R.1    Medvedev, P.2
  • 35
    • 84940907209 scopus 로고    scopus 로고
    • BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs
    • Simão, F. A., Waterhouse, R. M., Ioannidis, P., Kriventseva, E. V. & Zdobnov, E. M. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31, 3210-3212 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 3210-3212
    • Simão, F.A.1    Waterhouse, R.M.2    Ioannidis, P.3    Kriventseva, E.V.4    Zdobnov, E.M.5
  • 36
    • 77956967295 scopus 로고    scopus 로고
    • Using the velvet de novo assembler for short-read sequencing technologies
    • Zerbino, D. R. Using the Velvet de novo assembler for short-read sequencing technologies. Curr. Protoc. Bioinformatics 31, 11.5.1-11.5.12 (2010).
    • (2010) Curr. Protoc. Bioinformatics , vol.31 , pp. 1-12
    • Zerbino, D.R.1
  • 37
    • 78349238864 scopus 로고    scopus 로고
    • Ray: Simultaneous assembly of reads from a mix of high-throughput sequencing technologies
    • Boisvert, S., Laviolette, F. & Corbeil, J. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies. J. Comput. Biol. 17, 1519-1533 (2010).
    • (2010) J. Comput. Biol. , vol.17 , pp. 1519-1533
    • Boisvert, S.1    Laviolette, F.2    Corbeil, J.3
  • 38
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling, A. C. E., Mau, B., Blattner, F. R. & Perna, N. T. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14, 1394-1403 (2004).
    • (2004) Genome Res. , vol.14 , pp. 1394-1403
    • Darling, A.C.E.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 39
    • 84928226812 scopus 로고    scopus 로고
    • Intraisolate mitochondrial genetic polymorphism and gene variants coexpression in arbuscular mycorrhizal fungi
    • Beaudet, D. et al. Intraisolate mitochondrial genetic polymorphism and gene variants coexpression in arbuscular mycorrhizal fungi. Genome Biol. Evol. 7, 218-227 (2015).
    • (2015) Genome Biol. Evol. , vol.7 , pp. 218-227
    • Beaudet, D.1
  • 40
    • 66649125296 scopus 로고    scopus 로고
    • The mitochondrial genome sequence of the arbuscular mycorrhizal fungus glomus intraradices isolate 494 and implications for the phylogenetic placement of glomus
    • Lee, J. & Young, J. P. W. The mitochondrial genome sequence of the arbuscular mycorrhizal fungus Glomus intraradices isolate 494 and implications for the phylogenetic placement of Glomus. New Phytol. 183, 200-211 (2009).
    • (2009) New Phytol. , vol.183 , pp. 200-211
    • Lee, J.1    Young, J.P.W.2
  • 41
    • 0033635022 scopus 로고    scopus 로고
    • Artemis: Sequence visualization and annotation
    • Rutherford, K. et al. Artemis: sequence visualization and annotation. Bioinformatics 16, 944-945 (2000).
    • (2000) Bioinformatics , vol.16 , pp. 944-945
    • Rutherford, K.1
  • 42
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows-wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 43
    • 80054915847 scopus 로고    scopus 로고
    • A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
    • Li, H. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics 27, 2987-2993 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2987-2993
    • Li, H.1
  • 46
    • 79251557454 scopus 로고    scopus 로고
    • PoPoolation: A toolbox for population genetic analysis of next generation sequencing data from pooled individuals
    • Kofler, R. et al. PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. PLoS ONE 6, e15925 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e15925
    • Kofler, R.1
  • 47
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: A map reduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a Map Reduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 48
    • 79960897016 scopus 로고    scopus 로고
    • Mutation surveyor: An in silico tool for sequencing analysis
    • Dong, C. & Yu, B. Mutation surveyor: an in silico tool for sequencing analysis. Methods Mol. Biol. 760, 223-237 (2011).
    • (2011) Methods Mol. Biol. , vol.760 , pp. 223-237
    • Dong, C.1    Yu, B.2
  • 49
    • 0037381673 scopus 로고    scopus 로고
    • Comparisons with caenorhabditis (approximately 100 Mb) and drosophila (approximately 175 Mb) using flow cytometry show genome size in arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the arabidopsis genome initiative estimate of approximately 125 Mb
    • Bennett, M. D., Leitch, I. J., Price, H. J. & Johnston, J. S. Comparisons with caenorhabditis (approximately 100 Mb) and drosophila (approximately 175 Mb) using flow cytometry show genome size in arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb. Ann. Bot. 91, 547-557 (2003).
    • (2003) Ann. Bot. , vol.91 , pp. 547-557
    • Bennett, M.D.1    Leitch, I.J.2    Price, H.J.3    Johnston, J.S.4
  • 50
    • 84862520770 scopus 로고    scopus 로고
    • Fiji: An open-source platform for biological-image analysis
    • Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nature Methods 9, 676-682 (2012).
    • (2012) Nature Methods , vol.9 , pp. 676-682
    • Schindelin, J.1
  • 51
    • 23144444421 scopus 로고    scopus 로고
    • AUGUSTUS: A web server for gene prediction in eukaryotes that allows user-defined constraints
    • Stanke, M. & Morgenstern, B. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res. 33, W465-W467 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. W465-W467
    • Stanke, M.1    Morgenstern, B.2
  • 52
    • 84891782659 scopus 로고    scopus 로고
    • Pfam: The protein families database
    • Finn, R. D. et al. Pfam: the protein families database. Nucleic Acids Res. 42, D222-D230 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. D222-D230
    • Finn, R.D.1
  • 53
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden markov models that represent all proteins of known structure
    • Gough, J., Karplus, K., Hughey, R. & Chothia, C. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J. Mol. Biol. 313, 903-919 (2001).
    • (2001) J. Mol. Biol. , vol.313 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 54
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • Lupas, A., Van Dyke, M. & Stock, J. Predicting coiled coils from protein sequences. Science 252, 1162-1164 (1991).
    • (1991) Science , vol.252 , pp. 1162-1164
    • Lupas, A.1    Van Dyke, M.2    Stock, J.3
  • 55
    • 23144464319 scopus 로고    scopus 로고
    • YASS: Enhancing the sensitivity of DNA similarity search
    • Noé, L. & Kucherov, G. YASS: enhancing the sensitivity of DNA similarity search. Nucleic Acids Res. 33, W540-W543 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. W540-W543
    • Noé, L.1    Kucherov, G.2
  • 56
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T. et al. Integrative genomics viewer. Nature Biotechnol. 29, 24-26 (2011).
    • (2011) Nature Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 57
    • 84944769118 scopus 로고    scopus 로고
    • Measuring meiotic crossovers via multi-locus genotyping of single pollen grains in barley
    • Dreissig, S. et al. Measuring meiotic crossovers via multi-locus genotyping of single pollen grains in barley. PLoS ONE 10, e0137677 (2015).
    • (2015) PLoS ONE , vol.10 , pp. e0137677
    • Dreissig, S.1
  • 58
    • 84920645442 scopus 로고    scopus 로고
    • A quantitative comparison of single-cell whole genome amplification methods
    • de Bourcy, C. F. A. et al. A quantitative comparison of single-cell whole genome amplification methods. PLoS ONE 9, e105585 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e105585
    • De Bourcy, C.F.A.1
  • 59
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (1994).
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 60
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321 (2010).
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1
  • 61
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: More models, new heuristics and parallel computing
    • Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9, 772-772 (2012).
    • (2012) Nature Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 62
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S. & Gascuel, O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003).
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 63
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama, M., Torrents, D. & Bork, P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34, W609-W612 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. W609-W612
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 64
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis, E., Claude, J. & Strimmer, K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20, 289-290 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 65
    • 41149089793 scopus 로고    scopus 로고
    • (eds Bastolla, D. U., Porto, P. D. M., Roman, D. H. E. & Vendruscolo, D. M.) (Springer)
    • Charif, D. & Lobry, J. R. in Structural Approaches to Sequence Evolution (eds Bastolla, D. U., Porto, P. D. M., Roman, D. H. E. & Vendruscolo, D. M.) 207-232 (Springer, 2007).
    • (2007) Structural Approaches to Sequence Evolution , pp. 207-232
    • Charif, D.1    Lobry, J.R.2
  • 66
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • Li, W. H. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36, 96-99 (1993).
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.H.1
  • 67
    • 0029594594 scopus 로고
    • DNA SP, DNA sequence polymorphism: An interactive program for estimating population genetics parameters from DNA sequence data
    • Rozas, J. & Rozas, R. Dna SP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data. Comput. Appl. Biosci. 11, 621-625 (1995).
    • (1995) Comput. Appl. Biosci. , vol.11 , pp. 621-625
    • Rozas, J.1    Rozas, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.