Observing vibrational energy flow in a protein with the spatial resolution of a single amino acid residue

Journal of Physical Chemistry Letters

Volumn 5, Issue 18, 2014, Pages 3269-3273

  Fujii, Naoki ^a   Mizuno, Misao ^a   Ishikawa, Haruto ^a   Mizutani, Yasuhisa ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

Excited states; Photochemistry; Spectroscopy

Indexed keywords

AMINO ACIDS; ELECTRON TRANSITIONS; EXCITED STATES; IMAGE RESOLUTION; PHOTOCHEMICAL REACTIONS; PHYSICAL CHEMISTRY; SPECTROSCOPY;

AMINO ACID RESIDUES; EXPERIMENTAL DIFFICULTIES; GENERAL METHODOLOGIES; HEAT TRANSPORT MODEL; MICROSCOPIC VIEWPOINT; SPATIAL RESOLUTION; TIME RESOLVED RESONANCE RAMAN SPECTROSCOPY; VIBRATIONAL ENERGY FLOW;

PROTEINS;

EID: 84990202179     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz501882h     Document Type: Article

References (30)

1. Owrutsky, J. C.; Raftery, D.; Hochstrasser, R. M. Vibrational Relaxation Dynamics in Solutions. Annu. Rev. Phys. Chem. 1994, 45, 519-555.
2. Elsaesser, T.; Kaiser, W. Vibrational and Vibronic Relaxation of Large Polyatomic Molecules in Liquids. Annu. Rev. Phys. Chem. 1991, 42, 83-107.
3. Seilmeier, A.; Kaiser, W. In Ultrashort Laser Pulses; Kaiser, W., Ed.; Springer: New York, 1993; p 279.
4. Zinth, W.; Kaiser, W. In Ultrashort Laser Pulses; Kaiser, W., Ed.; Springer: New York, 1993; p 235.
5. Proteins: Energy, Heat and Signal Flow; Leitner, D. M., Straub, J. E., Eds.; CRC Press: Boca Raton, FL, 2009.
6. Carslaw, H. S.; Jaeger, J. C. Conduction of Heat in Solids; Oxford University Press: Oxford, U.K., 1959.
7. Muller-Werkmeister, H. M.; Bredenbeck, J. A Donor-Acceptor Pair for the Real Time Study of Vibrational Energy Transfer in Proteins. Phys. Chem. Chem. Phys. 2014, 16, 3261-3266.
8. Helbing, J.; Devereux, M.; Nienhaus, K.; Nienhaus, G. U.; Hamm, P.; Meuwly, M. Temperature Dependence of the Heat Diffusivity of Proteins. J. Phys. Chem. A 2011, 116, 2620-2628.
9. Li, G.; Magana, D.; Dyer, R. B. Anisotropic Energy Flow and Allosteric Ligand Binding in Albumin. Nat. Commun. 2014, 5, 3100.
10. Champion, P. M.; Lange, R. On the Quantitation of Light Emission from Cytochrome c in the Low Quantum Yield Limit. J. Chem. Phys. 1980, 73, 5947-5957.
11. Henry, E. R.; Eaton, W. A.; Hochstrasser, R. M. Molecular Dynamics Simulations of Cooling in Laser-Excited Heme Proteins. Proc. Natl. Acad. Sci. U.S.A. 1986, 83, 8982-8986.
12. Lim, M.; Jackson, T. A.; Anfinrud, P. A. Femtosecond Near-IR Absorbance Study of Photoexcited Myoglobin: Dynamics of Electronic and Thermal Relaxation. J. Phys. Chem. 1996, 100, 12043-12051.
13. Ye, X.; Demidov, A.; Rosca, F.; Wang, W.; Kumar, A.; Ionascu, D.; Zhu, L.; Barrick, D.; Wharton, D.; Champion, P. M. Investigations of Heme Protein Absorption Line Shapes, Vibrational Relaxation, and Resonance Raman Scattering on Ultrafast Time Scales. J. Phys. Chem. A 2003, 107, 8156-8165.
14. Franzen, S.; Bohn, B.; Poyart, C.; Martin, J. L. Evidence for Sub-Picosecond Heme Doming in Hemoglobin and Myoglobin: A Time-Resolved Resonance Raman Comparison of Carbonmonoxy and Deoxy Species. Biochemistry 1995, 34, 1224-1237.
15. Mizutani, Y.; Kitagawa, T. Direct Observation of Cooling of Heme Upon Photodissociation of Carbonmonoxy Myoglobin. Science 1997, 278, 443-446.
16. Mizutani, Y.; Kitagawa, T. Ultrafast Dynamics of Myoglobin Probed by Time-Resolved Resonance Raman Spectroscopy. Chem. Rec. 2001, 1, 258-275.
17. Lian, T.; Locke, B.; Kholodenko, Y.; Hochstrasser, R. M. Energy Flow from Solute to Solvent Probed by Femtosecond IR Spectros-copy: Malachite Green and Heme Protein Solutions. J. Phys. Chem. 1994, 98, 11648-11656.
18. Genberg, L.; Bao, Q.; Gracewski, S.; Miller, R. J. D. Picosecond Transient Thermal Phase Grating Spectroscopy: A New Approach to the Study of Vibrational Energy Relaxation Processes in Proteins. Chem. Phys. 1989, 131, 81-97.
19. Genberg, L.; Heisel, F.; McLendon, G.; Miller, R. J. D. Vibrational Energy Relaxation Processes in Heme Proteins: Model Systems of Vibrational Energy Dispersion in Disordered Systems. J. Phys. Chem. 1987, 91, 5521-5524.
20. Okamoto, H.; Nakabayashi, T.; Tasumi, M. Analysis of Anti-Stokes Resonance Raman Excitation Profiles as a Method for Studying Vibrationally Excited Molecules. J. Phys. Chem. A 1997, 101, 3488-3493.
21. Asher, S. A. Uv Resonance Raman Studies of Molecular Structure and Dynamics: Applications in Physical and Biophysical Chemistry. Annu. Rev. Phys. Chem. 1988, 39, 537-588.
22. Harada, I.; Takeuchi, H. Raman and Ultraviolet Resonance Raman Spectra of Proteins and Related Compounds. In Spectroscopy of Biological Systems; Clark, R. J. H., Hester, R. E., Eds.; John Wiley & Sons: Chichester, U.K., 1986; pp 113-175.
23. Fujii, N.; Mizuno, M.; Mizutani, Y. Direct Observation of Vibrational Energy Flow in Cytochrome c. J. Phys. Chem. B 2011, 115, 13057-13064.
24. Sirangelo, I.; Tavassi, S.; Martelli, P. L.; Casadio, R.; Irace, G. The Effect of Tryptophanyl Substitution on Folding and Structure of Myoglobin. Eur. J. Biochem. 2000, 267, 3937-3945.
25. Olson, J. S.; Soman, J.; Phillips, G. N. Ligand Pathways in Myoglobin: A Review of Trp Cavity Mutations. IUBMB Life 2007, 59, 552-562.
26. Li, P.; Champion, P. M. Investigations of the Thermal Response of Laser-Excited Biomolecules. Biophys. J. 1994, 66, 430-436.
27. Leitner, D. M. Energy Flow in Proteins. Annu. Rev. Phys. Chem. 2008, 59, 233-259.
28. Li, P.; Sage, J. T.; Champion, P. M. Probing Picosecond Processes with Nanosecond Lasers: Electronic and Vibrational Relaxation Dynamics of Heme Proteins. J. Chem. Phys. 1992, 97, 3214-3227.
29. Leitner, D. M. Frequency-Resolved Communication Maps for Proteins and Other Nanoscale Materials. J. Chem. Phys. 2009, 130, 195101.
30. Martínez, L.; Figueira, A. C. M.; Webb, P.; Polikarpov, I.; Skaf, M. S. Mapping the Intramolecular Vibrational Energy Flow in Proteins Reveals Functionally Important Residues. J. Phys. Chem. Lett. 2011, 2, 2073-2078.