Literature-based knowledgebase of pancreatic cancer gene to prioritize the key genes and pathways

Journal of Genetics and Genomics

Volumn 43, Issue 9, 2016, Pages 569-571

  Liu, Yining ^a   Sun, Jingchun ^b   Zhao, Min ^a  

^a UNIVERSITY OF THE SUNSHINE COAST   (Australia)

^b UNIVERSITY OF TEXAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALGRANULIN A; CDH2 PROTEIN; CYCLIN DEPENDENT KINASE INHIBITOR 2A; CYCLOOXYGENASE 2; EPIDERMAL GROWTH FACTOR RECEPTOR 2; FIBROBLAST GROWTH FACTOR RECEPTOR 3; IER3 PROTEIN; ITGB4 PROTEIN; LONG UNTRANSLATED RNA; LRP1 PROTEIN; MUCIN 1; MUCIN 4; NEUTROPHIL GELATINASE ASSOCIATED LIPOCALIN; NOTCH1 RECEPTOR; ONCOPROTEIN; PROSTAGLANDIN SYNTHASE; PROSTATE STEM CELL ANTIGEN; S100A11 PROTEIN; S100A2 PROTEIN; SERPINB5 PROTEIN; SMAD2 PROTEIN; SMAD4 PROTEIN; SMAD7 PROTEIN; TNFRSF1B PROTEIN; UNCLASSIFIED DRUG; VMP1 PROTEIN;

CANCER GROWTH; CARCINOGENESIS; COPY NUMBER VARIATION; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENETIC DATABASE; HUMAN; LETTER; MOLECULAR GENETICS; ONCOGENE; OVERLAPPING GENE; PANCREAS CANCER; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION; TUMOR GENE; TUMOR SUPPRESSOR GENE; TUMOR VASCULARIZATION; GENETICS; KNOWLEDGE BASE; PANCREAS TUMOR;

HUMANS; KNOWLEDGE BASES; ONCOGENES; PANCREATIC NEOPLASMS;

EID: 84990029642     PISSN: 16738527     EISSN: 18735533     Source Type: Journal    
DOI: 10.1016/j.jgg.2016.04.006     Document Type: Letter

References (18)

1. Amberger, J., Bocchini, C.A., Scott, A.F., Hamosh, A., McKusick's Online Mendelian Inheritance in Man (OMIM). Nucleic Acids Res. 37 (2009), D793–D796.
2. Aronson, A.R., Mork, J.G., Gay, C.W., Humphrey, S.M., Rogers, W.J., The NLM indexing initiative's medical text indexer. Stud. Health Technol. Inform. 107 (2004), 268–272.
3. Becker, K.G., Barnes, K.C., Bright, T.J., Wang, S.A., The genetic association database. Nat. Genet. 36 (2004), 431–432.
4. Chu, J., Lloyd, F.L., Trifan, O.C., Knapp, B., Rizzo, M.T., Potential involvement of the cyclooxygenase-2 pathway in the regulation of tumor-associated angiogenesis and growth in pancreatic cancer. Mol. Cancer Ther. 2 (2003), 1–7.
5. Gao, J., Aksoy, B.A., Dogrusoz, U., Dresdner, G., Gross, B., Sumer, S.O., Sun, Y., Jacobsen, A., Sinha, R., Larsson, E., Cerami, E., Sander, C., Schultz, N., Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci. Signal., 6, 2013, l1.
6. Grutzmann, R., Boriss, H., Ammerpohl, O., Luttges, J., Kalthoff, H., Schackert, H.K., Kloppel, G., Saeger, H.D., Pilarsky, C., Meta-analysis of microarray data on pancreatic cancer defines a set of commonly dysregulated genes. Oncogene 24 (2005), 5079–5088.
7. Liu, Y., Zhao, M., lnCaNet: pan-cancer co-expression network for human lncRNA and cancer genes. Bioinformatics 32 (2016), 1595–1597.
8. Lu, Z., Cohen, K.B., Hunter, L., GeneRIF quality assurance as summary revision. Pac. Symp. Biocomput. 2007 (2007), 269–280.
9. Siegel, R.L., Miller, K.D., Jemal, A., Cancer statistics, 2015. CA Cancer J. Clin. 65 (2015), 5–29.
10. Waddell, N., Pajic, M., Patch, A.M., Chang, D.K., Kassahn, K.S., Bailey, P., Johns, A.L., Miller, D., Nones, K., Quek, K., Quinn, M.C., Robertson, A.J., Fadlullah, M.Z., Bruxner, T.J., Christ, A.N., Harliwong, I., Idrisoglu, S., Manning, S., Nourse, C., Nourbakhsh, E., Wani, S., Wilson, P.J., Markham, E., Cloonan, N., Anderson, M.J., Fink, J.L., Holmes, O., Kazakoff, S.H., Leonard, C., Newell, F., Poudel, B., Song, S., Taylor, D., Waddell, N., Wood, S., Xu, Q., Wu, J., Pinese, M., Cowley, M.J., Lee, H.C., Jones, M.D., Nagrial, A.M., Humphris, J., Chantrill, L.A., Chin, V., Steinmann, A.M., Mawson, A., Humphrey, E.S., Colvin, E.K., Chou, A., Scarlett, C.J., Pinho, A.V., Giry-Laterriere, M., Rooman, I., Samra, J.S., Kench, J.G., Pettitt, J.A., Merrett, N.D., Toon, C., Epari, K., Nguyen, N.Q., Barbour, A., Zeps, N., Jamieson, N.B., Graham, J.S., Niclou, S.P., Bjerkvig, R., Grutzmann, R., Aust, D., Hruban, R.H., Maitra, A., Iacobuzio-Donahue, C.A., Wolfgang, C.L., Morgan, R.A., Lawlor, R.T., Corbo, V., Bassi, C., Falconi, M., Zamboni, G., Tortora, G., Tempero, M.A., Australian Pancreatic Cancer Genome, I., Gill, A.J., Eshleman, J.R., Pilarsky, C., Scarpa, A., Musgrove, E.A., Pearson, J.V., Biankin, A.V., Grimmond, S.M., Whole genomes redefine the mutational landscape of pancreatic cancer. Nature 518 (2015), 495–501.
11. Welter, D., MacArthur, J., Morales, J., Burdett, T., Hall, P., Junkins, H., Klemm, A., Flicek, P., Manolio, T., Hindorff, L., Parkinson, H., The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res. 42 (2014), D1001–D1006.
12. Willis, J.A., Mukherjee, S., Orlow, I., Viale, A., Offit, K., Kurtz, R.C., Olson, S.H., Klein, R.J., Genome-wide analysis of the role of copy-number variation in pancreatic cancer risk. Front. Genet., 5, 2014, 29.
13. Yi, J.M., Guzzetta, A.A., Bailey, V.J., Downing, S.R., Van Neste, L., Chiappinelli, K.B., Keeley, B.P., Stark, A., Herrera, A., Wolfgang, C., Pappou, E.P., Iacobuzio-Donahue, C.A., Goggins, M.G., Herman, J.G., Wang, T.H., Baylin, S.B., Ahuja, N., Novel methylation biomarker panel for the early detection of pancreatic cancer. Clin. Cancer Res. 19 (2013), 6544–6555.
14. Zhao, M., Kim, P., Mitra, R., Zhao, J., Zhao, Z., TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes. Nucleic Acids Res. 44 (2016), D1023–D1031.
15. Zhao, M., Liu, Y., O'Mara, T.A., ECGene: a literature-based knowledgebase of endometrial cancer genes. Hum. Mutat. 37 (2015), 337–343.
16. Zhao, M., Sun, J., Zhao, Z., Distinct and competitive regulatory patterns of tumor suppressor genes and oncogenes in ovarian cancer. PLoS One, 7, 2012, e44175.
17. Zhao, M., Sun, J., Zhao, Z., Synergetic regulatory networks mediated by oncogene-driven microRNAs and transcription factors in serous ovarian cancer. Mol. Biosyst. 9 (2013), 3187–3198.
18. Zhao, M., Sun, J., Zhao, Z., TSGene: a web resource for tumor suppressor genes. Nucleic Acids Res. 41 (2013), D970–D976.