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Volumn 14, Issue 1, 2014, Pages

Mitochondrial sequences reveal a clear separation between Angolan and South African giraffe along a cryptic rift valley

Author keywords

Angolan giraffe; Botswana; Giraffa; MtDNA; Namibia; Phylogeny; Population genetics; South African giraffe

Indexed keywords

DIVERGENCE; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; MITOCHONDRIAL DNA; PELAGE; PHYLOGENY; PHYLOGEOGRAPHY; RIFT ZONE; SUBSPECIES; TAXONOMY; UNGULATE;

EID: 84988810614     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/s12862-014-0219-7     Document Type: Article
Times cited : (33)

References (53)
  • 2
    • 85010329436 scopus 로고    scopus 로고
    • An overview of giraffe giraffa camelopardalis taxonomy, distribution and conservation status, with a Namibian comparative and focus on the kunene region, Namibia
    • Fennessy J: An overview of Giraffe Giraffa camelopardalis taxonomy, distribution and conservation status, with a Namibian comparative and focus on the Kunene Region, Namibia. J Namib Sci Soc 2008, 56:1-16.
    • (2008) J Namib Sci Soc , vol.56 , pp. 1-16
    • Fennessy, J.1
  • 4
    • 85008814909 scopus 로고    scopus 로고
    • On the origin, evolution and phylogeny of giraffes giraffa camelopardalis
    • Mitchell G, Skinner JD: On the origin, evolution and phylogeny of giraffes Giraffa camelopardalis. Trans Roy Soc S Afr 2003, 58(1):51-73.
    • (2003) Trans Roy Soc S Afr , vol.58 , Issue.1 , pp. 51-73
    • Mitchell, G.1    Skinner, J.D.2
  • 5
    • 84980096175 scopus 로고
    • On the subspecies of giraffa camelopardalis
    • Lydekker R: On the subspecies of Giraffa camelopardalis. Proc Zool Soc Lond 1904, 74(1):202-229.
    • (1904) Proc Zool Soc Lond , vol.74 , Issue.1 , pp. 202-229
    • Lydekker, R.1
  • 7
    • 84867623117 scopus 로고    scopus 로고
    • Giraffa camelopardalis
    • Version 2014.2. Edited by IUCN
    • Fennessy J, Brown D: Giraffa camelopardalis. In IUCN Red List of Threatened Species. Version 2014.2. Edited by IUCN. 2010. http://www.iucnredlist.org/details/9194/0.
    • (2010) IUCN Red List of Threatened Species
    • Fennessy, J.1    Brown, D.2
  • 8
  • 10
    • 34047266419 scopus 로고    scopus 로고
    • Mitochondrial DNA variability in giraffa camelopardalis: Consequences for taxonomy, phylogeography and conservation of giraffes in west and Central Africa
    • Hassanin A, Ropiquet A, Gourmand AL, Chardonnet B, Rigoulet J: Mitochondrial DNA variability in Giraffa camelopardalis: consequences for taxonomy, phylogeography and conservation of giraffes in West and central Africa. C R Biol 2007, 330:265-274.
    • (2007) C R Biol , vol.330 , pp. 265-274
    • Hassanin, A.1    Ropiquet, A.2    Gourmand, A.L.3    Chardonnet, B.4    Rigoulet, J.5
  • 11
    • 84886284184 scopus 로고    scopus 로고
    • Mitochondrial DNA analyses show that Zambia's south luangwa valley giraffe (Giraffa camelopardalis thornicrofti) is genetically isolated
    • Fennessy J, Bock F, Tutchings A, Brenneman R, Janke A: Mitochondrial DNA analyses show that Zambia's South Luangwa Valley giraffe (Giraffa camelopardalis thornicrofti) is genetically isolated. Afr J Ecol 2013, 51(4):635-640.
    • (2013) Afr J Ecol , vol.51 , Issue.4 , pp. 635-640
    • Fennessy, J.1    Bock, F.2    Tutchings, A.3    Brenneman, R.4    Janke, A.5
  • 12
    • 11244270692 scopus 로고    scopus 로고
    • Cytonuclear genomic dissociation in African elephant species
    • Roca AL, Georgiadis N, O'Brien SJ: Cytonuclear genomic dissociation in African elephant species. Nat Genet 2005, 37(1):96-100.
    • (2005) Nat Genet , vol.37 , Issue.1 , pp. 96-100
    • Roca, A.L.1    Georgiadis, N.2    O'Brien, S.J.3
  • 14
    • 0032708406 scopus 로고    scopus 로고
    • Phylogeography of three closely related African bovids (tribe alcelaphini)
    • Arctander P, Johansen C, Coutellec-Vreto MA: Phylogeography of three closely related African bovids (tribe Alcelaphini). Mol Biol Evol 1999, 16(12):1724-1739.
    • (1999) Mol Biol Evol , vol.16 , Issue.12 , pp. 1724-1739
    • Arctander, P.1    Johansen, C.2    Coutellec-Vreto, M.A.3
  • 15
    • 83555162614 scopus 로고    scopus 로고
    • Genetic analysis of southern african gemsbok (Oryx gazella) reveals high variability, distinct lineages and strong divergence from the east African oryx beisa
    • Osmers B, Petersen BS, Hartl HB, Grobler JB, Kotze A, Van Aswegen E, Zachos FE: Genetic analysis of southern African gemsbok (Oryx gazella) reveals high variability, distinct lineages and strong divergence from the East African Oryx beisa. Mamm Biol 2012, 11(1):60-66.
    • (2012) Mamm Biol , vol.11 , Issue.1 , pp. 60-66
    • Osmers, B.1    Petersen, B.S.2    Hartl, H.B.3    Grobler, J.B.4    Kotze, A.5    Van Aswegen, E.6    Zachos, F.E.7
  • 16
    • 73149098710 scopus 로고    scopus 로고
    • Genetic structure of two populations of the namibian giraffe, giraffa camelopardalis angolensis
    • Brenneman RA, Louis EE Jr, Fennessy J: Genetic structure of two populations of the Namibian giraffe, Giraffa camelopardalis angolensis. Afr J Ecol 2009, 47(4):720-728.
    • (2009) Afr J Ecol , vol.47 , Issue.4 , pp. 720-728
    • Brenneman, R.A.1    Louis, E.E.2    Fennessy, J.3
  • 19
    • 84988899266 scopus 로고    scopus 로고
    • Windhoek: Unpublished Data
    • Natural Resource Working Group (NRWG): Game Count in Bwabwata National Park. Windhoek: Unpublished Data; 2012.
    • (2012) Game Count in Bwabwata National Park
  • 20
    • 0033497903 scopus 로고    scopus 로고
    • A reappraisal of epeirogenic flexure axes in southern Africa
    • Moore AE: A reappraisal of epeirogenic flexure axes in southern Africa. S Afr J Geol 1999, 102:363-376.
    • (1999) S Afr J Geol , vol.102 , pp. 363-376
    • Moore, A.E.1
  • 21
    • 84879953464 scopus 로고    scopus 로고
    • The evolution and ages of makgadikgadi palaeo-lakes: Consilient evidence from kalahari drainage evolution
    • Moore AE, Cotterill FPD, Eckardt FD: The evolution and ages of Makgadikgadi palaeo-lakes: consilient evidence from Kalahari drainage evolution. S Afr J Geol 2012, 115:385-413.
    • (2012) S Afr J Geol , vol.115 , pp. 385-413
    • Moore, A.E.1    Cotterill, F.P.D.2    Eckardt, F.D.3
  • 22
    • 84867623117 scopus 로고    scopus 로고
    • Giraffa camelopardalis ssp. Rothschildi
    • Version 2014.2. Edited by IUCN
    • Fennessy J, Brenneman R: Giraffa camelopardalis ssp. rothschildi. In IUCN Red List of Threatened Species. Version 2014.2. Edited by IUCN. 2010. http://www.iucnredlist.org/details/174469/0.
    • (2010) IUCN Red List of Threatened Species
    • Fennessy, J.1    Brenneman, R.2
  • 23
    • 67649400420 scopus 로고    scopus 로고
    • Gene flow and species delimitation
    • Petit RJ, Excoffier L: Gene flow and species delimitation. Trends Ecol Evol 2009, 24(7):386-393.
    • (2009) Trends Ecol Evol , vol.24 , Issue.7 , pp. 386-393
    • Petit, R.J.1    Excoffier, L.2
  • 24
    • 0842322955 scopus 로고    scopus 로고
    • Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA
    • Funk DJ, Omland KE: Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu Rev Ecol Evol Syst 2003, 34:397-423.
    • (2003) Annu Rev Ecol Evol Syst , vol.34 , pp. 397-423
    • Funk, D.J.1    Omland, K.E.2
  • 25
    • 84984089174 scopus 로고
    • Part 5: Order artiodactyla, suborder: Ruminatia, infraorder: Pecora, family: Giraffidae, genus: Giraffa
    • Zoological Society of London (ZSL): Part 5: Order Artiodactyla, Suborder: Ruminatia, Infraorder: Pecora, Family: Giraffidae, Genus: Giraffa. Trans Zool Soc London 1965, 30:139-168.
    • (1965) Trans Zool Soc London , vol.30 , pp. 139-168
  • 26
    • 42449136665 scopus 로고    scopus 로고
    • Mitochondrial DNA under siege in avian phylogeography
    • Zink RM, Barrowclough GF: Mitochondrial DNA under siege in avian phylogeography. Mol Ecol 2008, 17(9):2107-2121.
    • (2008) Mol Ecol , vol.17 , Issue.9 , pp. 2107-2121
    • Zink, R.M.1    Barrowclough, G.F.2
  • 27
    • 0000295156 scopus 로고
    • Family giraffidae, koobi fora research project
    • Oxford: Clarendon Press; [Harris JM (Series Editor): The Fossil Ungulates: Geology, Fossil Artiodactyls, and Palaeoenvironments]
    • Harris JM: Family Giraffidae, Koobi Fora Research Project. In The Fossil Ungulates: Geology, Fossil Artiodactyls, and Palaeoenvironments. Oxford: Clarendon Press; 1991:93-138 [Harris JM (Series Editor): The Fossil Ungulates: Geology, Fossil Artiodactyls, and Palaeoenvironments, vol 3].
    • (1991) The Fossil Ungulates: Geology, Fossil Artiodactyls, and Palaeoenvironments , vol.3 , pp. 93-138
    • Harris, J.M.1
  • 29
    • 12344265079 scopus 로고    scopus 로고
    • Divergence population genetics of chimpanzees
    • Won YJ, Hey J: Divergence Population Genetics of Chimpanzees. Mol Biol Evol 2005, 22:297-307.
    • (2005) Mol Biol Evol , vol.22 , pp. 297-307
    • Won, Y.J.1    Hey, J.2
  • 30
    • 74349086784 scopus 로고    scopus 로고
    • The evolution of South American endemic canids: A history of rapid diversification and morphological parallelism
    • Perini FA, Russo CAM, Schrago CG: The evolution of South American endemic canids: a history of rapid diversification and morphological parallelism. J Evol Biol 2010, 23(2):311-322.
    • (2010) J Evol Biol , vol.23 , Issue.2 , pp. 311-322
    • Perini, F.A.1    Russo, C.A.M.2    Schrago, C.G.3
  • 31
    • 0023822631 scopus 로고
    • Relationships between gene trees and species trees
    • Pamilo P, Nei M: Relationships between gene trees and species trees. Mol Biol Evol 1988, 5(5):568-583.
    • (1988) Mol Biol Evol , vol.5 , Issue.5 , pp. 568-583
    • Pamilo, P.1    Nei, M.2
  • 32
    • 0002917089 scopus 로고
    • The fossil record of African antelopes (Mammalia, bovidae) in relation to human evolution and paleoclimate
    • 1005th edition. Edited by Vrba ES, Denton GH, Partridge TC, Burckle LH. New Haven: Yale University Press
    • Vrba ES: The fossil record of African antelopes (Mammalia, Bovidae) in relation to human evolution and paleoclimate. In Paleoclimate and Evolution with emphasis on Human Origins. 1005th edition. Edited by Vrba ES, Denton GH, Partridge TC, Burckle LH. New Haven: Yale University Press; 1995:385-424.
    • (1995) Paleoclimate and Evolution with Emphasis on Human Origins , pp. 385-424
    • Vrba, E.S.1
  • 33
    • 84864281272 scopus 로고    scopus 로고
    • Comparative phylogeography of African savannah ungulates
    • Lorenzen ED, Heller R, Siegismund HR: Comparative phylogeography of African savannah ungulates. Mol Ecol 2012, 21:3656-3670.
    • (2012) Mol Ecol , vol.21 , pp. 3656-3670
    • Lorenzen, E.D.1    Heller, R.2    Siegismund, H.R.3
  • 35
    • 0032791002 scopus 로고    scopus 로고
    • Seasonal movements of giraffe in Niger
    • Ciofolo I, Le Pendu Y: Seasonal movements of giraffe in Niger. J Trop Ecol 1999, 15(3):341-353.
    • (1999) J Trop Ecol , vol.15 , Issue.3 , pp. 341-353
    • Ciofolo, I.1    Le Pendu, Y.2
  • 37
    • 80052937966 scopus 로고    scopus 로고
    • The fish river canyon (Southern Namibia): A record of cenozoic mantle dynamics?
    • Mvondo F, Dauteuil O, Guillocheau F: The Fish River canyon (Southern Namibia): A record of Cenozoic mantle dynamics? C R Geoscience 2011, 343:478-485.
    • (2011) C R Geoscience , vol.343 , pp. 478-485
    • Mvondo, F.1    Dauteuil, O.2    Guillocheau, F.3
  • 38
    • 4644299074 scopus 로고    scopus 로고
    • No suggestion of hybridization between the vulnerable black-faced impala (Aepyceros melampus petersi) and the common impala (A. M. Melampus) in etosha national park, Namibia
    • Lorenzen ED, Siegismund HR: No suggestion of hybridization between the vulnerable black-faced impala (Aepyceros melampus petersi) and the common impala (A. m. melampus) in Etosha National Park, Namibia. Mol Ecol 2004, 13(10):3007-3019.
    • (2004) Mol Ecol , vol.13 , Issue.10 , pp. 3007-3019
    • Lorenzen, E.D.1    Siegismund, H.R.2
  • 39
    • 13744252070 scopus 로고    scopus 로고
    • Geomorphological influences on vicariant evolution in some African mammals in the zambezi basin: Some lessons for conservation
    • Edited by Plowman A. Filander Verlag: Fürth
    • Cotterill FPD: Geomorphological influences on vicariant evolution in some African mammals in the Zambezi basin: some lessons for conservation. In Proceedings of an International Symposium on Duiker and Dwarf Antelope in Africa. Edited by Plowman A. Filander Verlag: Fürth; 2003:11-58.
    • (2003) Proceedings of An International Symposium on Duiker and Dwarf Antelope in Africa , pp. 11-58
    • Cotterill, F.P.D.1
  • 40
    • 0002751551 scopus 로고
    • The recognition concept of species. In species and speciation
    • Edited by Vrba ES
    • Paterson HEH: The recognition concept of species. In Species and speciation. Edited by Vrba ES. Pretoria: Transvaal Museum Monograph; 1985:21-29.
    • (1985) Pretoria: Transvaal Museum Monograph , pp. 21-29
    • Paterson, H.E.H.1
  • 41
    • 0023480935 scopus 로고
    • Sex-biased dispersal and inbreeding avoidance in birds and mammals
    • Pusey A: Sex-biased dispersal and inbreeding avoidance in birds and mammals. Trends Ecol Evol 1987, 2:295-299.
    • (1987) Trends Ecol Evol , vol.2 , pp. 295-299
    • Pusey, A.1
  • 43
    • 84864413626 scopus 로고    scopus 로고
    • The biogeography of mitochondrial and nuclear discordance in animals
    • Toews DP, Brelsford A: The biogeography of mitochondrial and nuclear discordance in animals. Mol Ecol 2012, 21(16):3907-3930.
    • (2012) Mol Ecol , vol.21 , Issue.16 , pp. 3907-3930
    • Toews, D.P.1    Brelsford, A.2
  • 44
    • 0001881618 scopus 로고
    • Preservation of avian blood and tissue samples for DNA analyses
    • Seutin G, White BN, Boag PT: Preservation of avian blood and tissue samples for DNA analyses. Can J Zool 1991, 69:82-90.
    • (1991) Can J Zool , vol.69 , pp. 82-90
    • Seutin, G.1    White, B.N.2    Boag, P.T.3
  • 47
    • 0031574072 scopus 로고    scopus 로고
    • The clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG: The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 48
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall K: TCS: a computer program to estimate gene genealogies. Mol Ecol 2000, 9(10):1657-1660.
    • (2000) Mol Ecol , vol.9 , Issue.10 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 49
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J: DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 50
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under linux and windows
    • Excoffier L, Lischer HEL: Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Res 2010, 10:564-567.
    • (2010) Mol Ecol Res , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.L.2
  • 51
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1.7
    • Drummond AJ, Suchard MA, Xie D, Rambaut A: Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 2012, 29(8):1969-1973.
    • (2012) Mol Biol Evol , vol.29 , Issue.8 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Xie, D.3    Rambaut, A.4
  • 52
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, Von Haeseler A, Strimmer K: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 2004, 4:18.
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    Von Haeseler, A.2    Strimmer, K.3
  • 53
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D: jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 2012, 9(8):772.
    • (2012) Nature Methods , vol.9 , Issue.8 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4


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