Genomic sequence of Klebsiella pneumoniae IIEMP-3, a vitamin B12-producing strain from Indonesian tempeh

Genome Announcements

Volumn 4, Issue 1, 2016, Pages

  Yulandi, Adi ^a   Sugiokto, Febri Gunawan ^a   Febrilina, ^a   Suwanto, Antonius ^a,b  

^a ATMA JAYA CATHOLIC UNIVERSITY OF INDONESIA   (Indonesia)

^b BOGOR AGRICULTURAL UNIVERSITY   (Indonesia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84988624150     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01724-15     Document Type: Article

References (11)

1. Astuti M, Meliala A, Dalais FS, Wahlqvist ML. 2000. Tempe, a nutritious and healthy food from Indonesia. Asia Pac J Clin Nutr 9:322-325. http://dx.doi.org/10.1046/j.1440-6047.2000.00176.x.
2. Keuth S, Bisping B. 1993. Formation of vitamins by pure cultures of tempe moulds and bacteria during the tempe solid substrate fermentation. J Appl Bacteriol 75:427-434. http://dx.doi.org/10.1111/j.1365-2672.1993.tb02798.x.
3. 12 in tempeh, a fermented soybean food. Appl Environ Microbiol 34:773-776.
4. Podschun R, Ullmann U. 1998. Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors. Clin Microbiol Rev 11:589-603.
5. Gori A, Espinasse F, Deplano A, Nonhoff C, Nicolas MH, Struelens MJ. 1996 Comparison of pulsed-field gel electrophoresis and randomly amplified DNA polymorphism analysis for typing extended-spectrum-beta-lactamaseproducing Klebsiella pneumoniae. J Clin Microbiol 34:2448-2453.
6. Wang JH, Liu YC, Lee SS, Yen MY, Chen YS, Wang JH, Wann SR, Lin HH. 1998. Primary liver abscess due to Klebsiella pneumoniae in Taiwan. Clin Infect Dis 26:1434-1438. http://dx.doi.org/10.1086/516369.
7. Ayu E, Suwanto A, Barus T. 2014. Klebsiella pneumoniae from Indonesian tempeh were genetically different from that of pathogenic isolates. Microbiol Indonesia 8:9-15. http://dx.doi.org/10.5454/mi.8.1.2.
8. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
9. Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. 2011. Scaffolding preassembled contigs using SSPACE. Bioinformatics 27:578-579. http://dx.doi.org/10.1093/bioinformatics/btq683.
10. Swain MT, Tsai IJ, Assefa SA, Newbold C, Berriman M, Otto TD. 2012. A postassembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs. Nat Protoc 7:1260-1284. http://dx.doi.org/10.1038/nprot.2012.068.
11. Hunt M, Kikuchi T, Sanders M, Newbold C, Berriman M, Otto TD. 2013 REAPR: a universal tool for genome assembly evaluation. Genome Biol 14:R47. http://dx.doi.org/10.1186/gb-2013-14-5-r47.