-
1
-
-
84902649784
-
Mining the human gut microbiota for effector strains that shape the immune system
-
Ahern PP, Faith JJ, Gordon JI. Mining the human gut microbiota for effector strains that shape the immune system. Immunity. 2014;40:815-23.
-
(2014)
Immunity
, vol.40
, pp. 815-823
-
-
Ahern, P.P.1
Faith, J.J.2
Gordon, J.I.3
-
2
-
-
84942874856
-
Early infancy microbial and metabolic alterations affect risk of childhood asthma
-
307ra152.
-
Arrieta MC, Stiemsma LT, Dimitriu PA, Thorson L, Russell S, Yurist-Doutsch S, Kuzeljevic B, Gold MJ, Britton HM, Lefebvre DL, Subbarao P, Mandhane P, Becker A, McNagny KM, Sears MR, Kollmann T, Investigators CS, Mohn WW, Turvey SE, Brett Finlay B. Early infancy microbial and metabolic alterations affect risk of childhood asthma. Sci Transl Med. 2015;7:307ra152.
-
(2015)
Sci Transl Med
, vol.7
-
-
Arrieta, M.C.1
Stiemsma, L.T.2
Dimitriu, P.A.3
Thorson, L.4
Russell, S.5
Yurist-Doutsch, S.6
Kuzeljevic, B.7
Gold, M.J.8
Britton, H.M.9
Lefebvre, D.L.10
Subbarao, P.11
Mandhane, P.12
Becker, A.13
McNagny, K.M.14
Sears, M.R.15
Kollmann, T.16
Investigators, C.S.17
Mohn, W.W.18
Turvey, S.E.19
Brett Finlay, B.20
more..
-
3
-
-
84881477044
-
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
-
Atarashi K, Tanoue T, Oshima K, Suda W, Nagano Y, Nishikawa H, Fukuda S, Saito T, Narushima S, Hase K, Kim S, Fritz JV, Wilmes P, Ueha S, Matsushima K, Ohno H, Olle B, Sakaguchi S, Taniguchi T, Morita H, Hattori M, Honda K. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota. Nature. 2013;500:232-6.
-
(2013)
Nature
, vol.500
, pp. 232-236
-
-
Atarashi, K.1
Tanoue, T.2
Oshima, K.3
Suda, W.4
Nagano, Y.5
Nishikawa, H.6
Fukuda, S.7
Saito, T.8
Narushima, S.9
Hase, K.10
Kim, S.11
Fritz, J.V.12
Wilmes, P.13
Ueha, S.14
Matsushima, K.15
Ohno, H.16
Olle, B.17
Sakaguchi, S.18
Taniguchi, T.19
Morita, H.20
Hattori, M.21
Honda, K.22
more..
-
4
-
-
81855167104
-
Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination
-
Berer K, Mues M, Koutrolos M, Rasbi ZA, Boziki M, Johner C, Wekerle H, Krishnamoorthy G. Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination. Nature. 2011;479:538-41.
-
(2011)
Nature
, vol.479
, pp. 538-541
-
-
Berer, K.1
Mues, M.2
Koutrolos, M.3
Rasbi, Z.A.4
Boziki, M.5
Johner, C.6
Wekerle, H.7
Krishnamoorthy, G.8
-
5
-
-
84930361344
-
Gut microbiota in multiple sclerosis: possible influence of immunomodulators
-
Cantarel BL, Waubant E, Chehoud C, Kuczynski J, DeSantis TZ, Warrington J, Venkatesan A, Fraser CM, Mowry EM. Gut microbiota in multiple sclerosis: possible influence of immunomodulators. J Invest Med. 2015;63:729-34.
-
(2015)
J Invest Med
, vol.63
, pp. 729-734
-
-
Cantarel, B.L.1
Waubant, E.2
Chehoud, C.3
Kuczynski, J.4
DeSantis, T.Z.5
Warrington, J.6
Venkatesan, A.7
Fraser, C.M.8
Mowry, E.M.9
-
6
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nature Meth. 2010;7:335-6.
-
(2010)
Nature Meth
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
7
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME. 2012;6:1621-4.
-
(2012)
ISME
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
Owens, S.M.7
Betley, J.8
Fraser, L.9
Bauer, M.10
Gormley, N.11
Gilbert, J.A.12
Smith, G.13
Knight, R.14
-
8
-
-
34047251829
-
Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges
-
Faith DP, Baker AM. Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges. Evol Bioinfo. 2006;2:121-8.
-
(2006)
Evol Bioinfo
, vol.2
, pp. 121-128
-
-
Faith, D.P.1
Baker, A.M.2
-
9
-
-
84988468972
-
Microbiome Analysis using Workflow of QIIME
-
Faruqi AA. Microbiome Analysis using Workflow of QIIME. In: GitHub. 2015.
-
(2015)
GitHub
-
-
Faruqi, A.A.1
-
10
-
-
84890564250
-
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
-
Furusawa Y, Obata Y, Fukuda S, Endo TA, Nakato G, Takahashi D, Nakanishi Y, Uetake C, Kato K, Kato T, Takahashi M, Fukuda NN, Murakami S, Miyauchi E, Hino S, Atarashi K, Onawa S, Fujimura Y, Lockett T, Clarke JM, Topping DL, Tomita M, Hori S, Ohara O, Morita T, Koseki H, Kikuchi J, Honda K, Hase K, Ohno H. Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature. 2013;504:446-50.
-
(2013)
Nature
, vol.504
, pp. 446-450
-
-
Furusawa, Y.1
Obata, Y.2
Fukuda, S.3
Endo, T.A.4
Nakato, G.5
Takahashi, D.6
Nakanishi, Y.7
Uetake, C.8
Kato, K.9
Kato, T.10
Takahashi, M.11
Fukuda, N.N.12
Murakami, S.13
Miyauchi, E.14
Hino, S.15
Atarashi, K.16
Onawa, S.17
Fujimura, Y.18
Lockett, T.19
Clarke, J.M.20
Topping, D.L.21
Tomita, M.22
Hori, S.23
Ohara, O.24
Morita, T.25
Koseki, H.26
Kikuchi, J.27
Honda, K.28
Hase, K.29
Ohno, H.30
more..
-
11
-
-
84910096224
-
Human genetics shape the gut microbiome
-
Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, Spector TD, Clark AG, Ley RE. Human genetics shape the gut microbiome. Cell. 2014;159:789-99.
-
(2014)
Cell
, vol.159
, pp. 789-799
-
-
Goodrich, J.K.1
Waters, J.L.2
Poole, A.C.3
Sutter, J.L.4
Koren, O.5
Blekhman, R.6
Beaumont, M.7
Treuren, W.8
Knight, R.9
Bell, J.T.10
Spector, T.D.11
Clark, A.G.12
Ley, R.E.13
-
12
-
-
0003471087
-
Applied Statistics for the Behavioral Sciences
-
Boston: Houghton Mifflin
-
Hinkle DE, Wiersma W, SG J. Applied Statistics for the Behavioral Sciences. Boston: Houghton Mifflin; 2003.
-
(2003)
-
-
Hinkle, D.E.1
Wiersma, W.S.G.J.2
-
13
-
-
85015860207
-
Structure and function of the healthy pre-adolescent pediatric gut microbiome
-
Hollister EB, Riehle K, Luna RA, Weidler EM, Rubio-Gonzales M, Mistretta TA, Raza S, Doddapaneni HV, Metcalf GA, Muzny DM, Gibbs RA, Petrosino JF, Shulman RJ, Versalovic J. Structure and function of the healthy pre-adolescent pediatric gut microbiome. Microbiome. 2015;3:36.
-
(2015)
Microbiome
, vol.3
, pp. 36
-
-
Hollister, E.B.1
Riehle, K.2
Luna, R.A.3
Weidler, E.M.4
Rubio-Gonzales, M.5
Mistretta, T.A.6
Raza, S.7
Doddapaneni, H.V.8
Metcalf, G.A.9
Muzny, D.M.10
Gibbs, R.A.11
Petrosino, J.F.12
Shulman, R.J.13
Versalovic, J.14
-
14
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Human Microbiome Project C. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207-14.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
15
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U, Wei D, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell. 2009;139:485-98.
-
(2009)
Cell
, vol.139
, pp. 485-498
-
-
Ivanov, I.I.1
Atarashi, K.2
Manel, N.3
Brodie, E.L.4
Shima, T.5
Karaoz, U.6
Wei, D.7
Goldfarb, K.C.8
Santee, C.A.9
Lynch, S.V.10
Tanoue, T.11
Imaoka, A.12
Itoh, K.13
Takeda, K.14
Umesaki, Y.15
Honda, K.16
Littman, D.R.17
-
16
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jorgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clement K, Dore J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T, Meta HITc, Bork P, Wang J, Ehrlich SD, Pedersen O. Richness of human gut microbiome correlates with metabolic markers. Nature. 2013;500:541-6.
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Chatelier, E.1
Nielsen, T.2
Qin, J.3
Prifti, E.4
Hildebrand, F.5
Falony, G.6
Almeida, M.7
Arumugam, M.8
Batto, J.M.9
Kennedy, S.10
Leonard, P.11
Li, J.12
Burgdorf, K.13
Grarup, N.14
Jorgensen, T.15
Brandslund, I.16
Nielsen, H.B.17
Juncker, A.S.18
Bertalan, M.19
Levenez, F.20
Pons, N.21
Rasmussen, S.22
Sunagawa, S.23
Tap, J.24
Tims, S.25
Zoetendal, E.G.26
Brunak, S.27
Clement, K.28
Dore, J.29
Kleerebezem, M.30
Kristiansen, K.31
Renault, P.32
Sicheritz-Ponten, T.33
Vos, W.M.34
Zucker, J.D.35
Raes, J.36
Hansen, T.37
Bork, P.38
Wang, J.39
Ehrlich, S.D.40
Pedersen, O.41
more..
-
17
-
-
79952748674
-
Proinflammatory T-cell responses to gut microbiota promote experimental autoimmune encephalomyelitis
-
Lee YK, Menezes JS, Umesaki Y, Mazmanian SK. Proinflammatory T-cell responses to gut microbiota promote experimental autoimmune encephalomyelitis. Proc Natl Acad Sci U S A. 2011;108 Suppl 1:4615-22.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4615-4622
-
-
Lee, Y.K.1
Menezes, J.S.2
Umesaki, Y.3
Mazmanian, S.K.4
-
18
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley RE, Peterson DA, Gordon JI. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006;124:837-48.
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
19
-
-
84904874034
-
Microbiota: host interactions in mucosal homeostasis and systemic autoimmunity
-
Longman RS, Yang Y, Diehl GE, Kim SV, Littman DR. Microbiota: host interactions in mucosal homeostasis and systemic autoimmunity. Cold Spring Harbor Symp Quant Bio. 2013;78:193-201.
-
(2013)
Cold Spring Harbor Symp Quant Bio
, vol.78
, pp. 193-201
-
-
Longman, R.S.1
Yang, Y.2
Diehl, G.E.3
Kim, S.V.4
Littman, D.R.5
-
20
-
-
84866167497
-
Reciprocal interactions of the intestinal microbiota and immune system
-
Maynard CL, Elson CO, Hatton RD, Weaver CT. Reciprocal interactions of the intestinal microbiota and immune system. Nature. 2012;489:231-41.
-
(2012)
Nature
, vol.489
, pp. 231-241
-
-
Maynard, C.L.1
Elson, C.O.2
Hatton, R.D.3
Weaver, C.T.4
-
22
-
-
84947447931
-
Dysbiosis in the gut microbiota of patients with multiple sclerosis, with a striking depletion of species belonging to clostridia XIVa and IV clusters
-
Miyake S, Kim S, Suda W, Oshima K, Nakamura M, Matsuoka T, Chihara N, Tomita A, Sato W, Kim SW, Morita H, Hattori M, Yamamura T. Dysbiosis in the gut microbiota of patients with multiple sclerosis, with a striking depletion of species belonging to clostridia XIVa and IV clusters. PLoS One. 2015;10, e0137429.
-
(2015)
PLoS One
, vol.10
-
-
Miyake, S.1
Kim, S.2
Suda, W.3
Oshima, K.4
Nakamura, M.5
Matsuoka, T.6
Chihara, N.7
Tomita, A.8
Sato, W.9
Kim, S.W.10
Morita, H.11
Hattori, M.12
Yamamura, T.13
-
23
-
-
84858153337
-
Role of the microbiota in inflammatory bowel diseases
-
Nagalingam NA, Lynch SV. Role of the microbiota in inflammatory bowel diseases. Inflamm Bowel Dis. 2012;18:968-84.
-
(2012)
Inflamm Bowel Dis
, vol.18
, pp. 968-984
-
-
Nagalingam, N.A.1
Lynch, S.V.2
-
24
-
-
84914179053
-
R: A language and environment for statistical computing
-
Vienna: R Foundation for Statistical Computing
-
R Core Team. R: A language and environment for statistical computing. Vienna: R Foundation for Statistical Computing; 2013.
-
(2013)
-
-
-
25
-
-
84896903104
-
Immunology of relapse and remission in multiple sclerosis
-
Steinman L. Immunology of relapse and remission in multiple sclerosis. Annu Rev Immunol. 2014;32:257-81.
-
(2014)
Annu Rev Immunol
, vol.32
, pp. 257-281
-
-
Steinman, L.1
-
26
-
-
84959084455
-
Gut microbiota composition and relapse risk in pediatric MS: a pilot study
-
Tremlett H, Fadrosh DW, Faruqi AA, Hart J, Roalstad S, Graves J, Lynch S, Waubant E. Gut microbiota composition and relapse risk in pediatric MS: a pilot study. J Neurol Sci. 2016;363:153-7.
-
(2016)
J Neurol Sci
, vol.363
, pp. 153-157
-
-
Tremlett, H.1
Fadrosh, D.W.2
Faruqi, A.A.3
Hart, J.4
Roalstad, S.5
Graves, J.6
Lynch, S.7
Waubant, E.8
-
27
-
-
85027917252
-
Gut microbiota in early pediatric multiple sclerosis: a case-control study
-
Tremlett H, Fadrosh DW, Faruqi AA, Zhu F, Hart J, Roalstad S, Graves J, Lynch S, Waubant E. Gut microbiota in early pediatric multiple sclerosis: a case-control study. Eur J Neurol. 2016. doi: 10.1111/ene.13026[Epub ahead of print].
-
(2016)
Eur J Neurol
-
-
Tremlett, H.1
Fadrosh, D.W.2
Faruqi, A.A.3
Zhu, F.4
Hart, J.5
Roalstad, S.6
Graves, J.7
Lynch, S.8
Waubant, E.9
-
28
-
-
84893704050
-
Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis
-
Trompette A, Gollwitzer ES, Yadava K, Sichelstiel AK, Sprenger N, Ngom-Bru C, Blanchard C, Junt T, Nicod LP, Harris NL, Marsland BJ. Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis. Nat Med. 2014;20:159-66.
-
(2014)
Nat Med
, vol.20
, pp. 159-166
-
-
Trompette, A.1
Gollwitzer, E.S.2
Yadava, K.3
Sichelstiel, A.K.4
Sprenger, N.5
Ngom-Bru, C.6
Blanchard, C.7
Junt, T.8
Nicod, L.P.9
Harris, N.L.10
Marsland, B.J.11
-
29
-
-
84988468052
-
Children's BMI Tool for Schools
-
[updated September 13, 2010; Accessed 19 Sept]
-
USA's Centers for Disease Control and Prevention. Children's BMI Tool for Schools. [updated September 13, 2010; Accessed 19 Sept 2016]; Available from: http://www.cdc.gov/healthyweight/assessing/bmi/childrens_BMI/tool_for_schools.html.
-
(2016)
-
-
-
30
-
-
0000594195
-
Evolution and measurement of species diversity
-
Whittaker RH. Evolution and measurement of species diversity. Taxon. 1972;21:213-51.
-
(1972)
Taxon
, vol.21
, pp. 213-251
-
-
Whittaker, R.H.1
|