-
1
-
-
33745454125
-
Synthetic biology: New engineering rules for an emerging discipline
-
E. Andrianantoandro, S. Basu, D. K. Karig, and R. Weiss, "Synthetic biology: new engineering rules for an emerging discipline", Molecular systems biology, vol. 2, no. 1, 2006.
-
(2006)
Molecular Systems Biology
, vol.2
, Issue.1
-
-
Andrianantoandro, E.1
Basu, S.2
Karig, D.K.3
Weiss, R.4
-
2
-
-
56649114274
-
A one pot, one step, precision cloning method with high throughput capability
-
C. Engler, R. Kandzia, and S. Marillonnet, "A one pot, one step, precision cloning method with high throughput capability", PloS one, vol. 3, no. 11, pp. e3647, 2008.
-
(2008)
PloS One
, vol.3
, Issue.11
, pp. e3647
-
-
Engler, C.1
Kandzia, R.2
Marillonnet, S.3
-
3
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
D. G. Gibson, L. Young, R-Y. Chuang, J. C. Venter, C. A. Hutchison, and H. O. Smith, "Enzymatic assembly of DNA molecules up to several hundred kilobases", Nature methods, vol. 6, no. 5, pp. 343-345, 2009.
-
(2009)
Nature Methods
, vol.6
, Issue.5
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.-Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
4
-
-
84899918637
-
Linear DNA for rapid prototyping of synthetic biological circuits in an escherichia coli based tx-tl cell-free system
-
Z. Z. Sun, E. Yeung, C. A Hayes, V. Noireaux, and R. M. Murray, "Linear DNA for rapid prototyping of synthetic biological circuits in an escherichia coli based tx-tl cell-free system", ACS synthetic biology, vol. 3, no. 6, pp. 387-397, 2014.
-
(2014)
ACS Synthetic Biology
, vol.3
, Issue.6
, pp. 387-397
-
-
Sun, Z.Z.1
Yeung, E.2
Hayes, C.A.3
Noireaux, V.4
Murray, R.M.5
-
5
-
-
84876382897
-
Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology
-
J. Chappell, K. Jensen, and P. S. Freemont, "Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology", Nucleic acids research, vol. 41, no. 5, pp. 3471-3481, 2013.
-
(2013)
Nucleic Acids Research
, vol.41
, Issue.5
, pp. 3471-3481
-
-
Chappell, J.1
Jensen, K.2
Freemont, P.S.3
-
6
-
-
84868619337
-
Genetic programs constructed from layered logic gates in single cells
-
T. S. Moon, C. Lou, A. Tamsir, B. C. Stanton, and C. A. Voigt, "Genetic programs constructed from layered logic gates in single cells", Nature, vol. 491, no. 7423, pp. 249-253, 2012.
-
(2012)
Nature
, vol.491
, Issue.7423
, pp. 249-253
-
-
Moon, T.S.1
Lou, C.2
Tamsir, A.3
Stanton, B.C.4
Voigt, C.A.5
-
7
-
-
84899694320
-
Principles of genetic circuit design
-
J. AN Brophy and C. A. Voigt, "Principles of genetic circuit design", Nature Methods, vol. 11, no. 5, pp. 508-520, 2014.
-
(2014)
Nature Methods
, vol.11
, Issue.5
, pp. 508-520
-
-
An Brophy, J.1
Voigt, C.A.2
-
8
-
-
39149113411
-
Modular cell biology: Retroactivity and insulation
-
D. Del Vecchio, A. J. Ninfa, and E. D. Sontag, "Modular cell biology: retroactivity and insulation", Mol. Syst. Biol, vol. 4, pp. 161, 2008.
-
(2008)
Mol. Syst. Biol
, vol.4
, pp. 161
-
-
Del Vecchio, D.1
Ninfa, A.J.2
Sontag, E.D.3
-
9
-
-
84874258815
-
Retroactivity to the input in complex gene transcription networks
-
2012 IEEE 51st Annual Conference on, Dec.
-
A. Gyorgy and D. Del Vecchio, "Retroactivity to the input in complex gene transcription networks", in Decision and Control (CDC), 2012 IEEE 51st Annual Conference on, Dec., pp. 3595-3601.
-
Decision and Control (CDC)
, pp. 3595-3601
-
-
Gyorgy, A.1
Del Vecchio, D.2
-
11
-
-
66149172363
-
Diversity-based, model-guided construction of synthetic gene networks with predicted functions
-
T. Ellis, X. Wang, and J. J. Collins, "Diversity-based, model-guided construction of synthetic gene networks with predicted functions", Nature biotechnology, vol. 27, no. 5, pp. 465-471, 2009.
-
(2009)
Nature Biotechnology
, vol.27
, Issue.5
, pp. 465-471
-
-
Ellis, T.1
Wang, X.2
Collins, J.J.3
-
12
-
-
84868625270
-
Queueing up for enzymatic processing: Correlated signaling through coupled degradation
-
N. Cookson et al, "Queueing up for enzymatic processing: correlated signaling through coupled degradation", Molecular Systems Biology, vol. 7, no. 561, 2011.
-
(2011)
Molecular Systems Biology
, vol.7
, Issue.561
-
-
Cookson, N.1
-
13
-
-
84863322344
-
Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems
-
S. Cardinale and A. Arkin, "Contextualizing context for synthetic biology-identifying causes of failure of synthetic biological systems", Biotechnology Journal, vol. 7, no. 7, pp. 856-866, 2012.
-
(2012)
Biotechnology Journal
, vol.7
, Issue.7
, pp. 856-866
-
-
Cardinale, S.1
Arkin, A.2
-
14
-
-
3042703044
-
Analysis of genomic context: Prediction of functional associations from conserved bidirectionally transcribed gene pairs
-
J. O. Korbel, L. J. Jensen, C. Von Mering, and P. Bork, "Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs", Nature biotechnology, vol. 22, no. 7, pp. 911-917, 2004.
-
(2004)
Nature Biotechnology
, vol.22
, Issue.7
, pp. 911-917
-
-
Korbel, J.O.1
Jensen, L.J.2
Von Mering, C.3
Bork, P.4
-
15
-
-
0035185382
-
Dna supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvyc operon of escherichia coli is proportional to promoter strengths and transcript lengths
-
M. L. Opel and G. Hatfield, "Dna supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvyc operon of escherichia coli is proportional to promoter strengths and transcript lengths", Molecular microbiology, vol. 39, no. 1, pp. 191-198, 2001.
-
(2001)
Molecular Microbiology
, vol.39
, Issue.1
, pp. 191-198
-
-
Opel, M.L.1
Hatfield, G.2
-
16
-
-
84879681227
-
Characterization of 582 natural and synthetic terminators and quantification of their design constraints
-
Y-J. Chen, P. Liu, A. AK Nielsen, J. AN Brophy, K. Clancy, T. Peterson, and C. A. Voigt, "Characterization of 582 natural and synthetic terminators and quantification of their design constraints", Nature methods, vol. 10, no. 7, pp. 659-664, 2013.
-
(2013)
Nature Methods
, vol.10
, Issue.7
, pp. 659-664
-
-
Chen, Y.-J.1
Liu, P.2
Ak Nielsen, A.3
An Brophy, J.4
Clancy, K.5
Peterson, T.6
Voigt, C.A.7
-
17
-
-
0344430112
-
Aptamers switch on fluorescence of triphenylmethane dyes
-
J. R. Babendure, S. R. Adams, and R. Y. Tsien, "Aptamers switch on fluorescence of triphenylmethane dyes", Journal of the American Chemical Society, vol. 125, no. 48, pp. 14716-14717, 2003.
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.48
, pp. 14716-14717
-
-
Babendure, J.R.1
Adams, S.R.2
Tsien, R.Y.3
-
18
-
-
79960959180
-
Rna mimics of green fluorescent protein
-
J. S. Paige, K. Y. Wu, and S. R. Jaffrey, "Rna mimics of green fluorescent protein", Science, vol. 333, no. 6042, pp. 642-646, 2011.
-
(2011)
Science
, vol.333
, Issue.6042
, pp. 642-646
-
-
Paige, J.S.1
Wu, K.Y.2
Jaffrey, S.R.3
-
19
-
-
84863610029
-
An E. Coli cell-free expression toolbox: Application to synthetic gene circuits and artificial cells
-
J. Shin and V. Noireaux, "An e. coli cell-free expression toolbox: application to synthetic gene circuits and artificial cells", ACS synthetic biology, vol. 1, no. 1, pp. 29-41, 2012.
-
(2012)
ACS Synthetic Biology
, vol.1
, Issue.1
, pp. 29-41
-
-
Shin, J.1
Noireaux, V.2
-
20
-
-
40749096382
-
Applied force reveals mechanistic and energetic details of transcription termination
-
M. H. Larson, W. J. Greenleaf, R. Landick, and S. M. Block, "Applied force reveals mechanistic and energetic details of transcription termination", Cell, vol. 132, no. 6, pp. 971-982, 2008.
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 971-982
-
-
Larson, M.H.1
Greenleaf, W.J.2
Landick, R.3
Block, S.M.4
-
21
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
L. F. Liu and J. C. Wang, "Supercoiling of the DNA template during transcription", Proceedings of the National Academy of Sciences, vol. 84, no. 20, pp. 7024-7027, 1987.
-
(1987)
Proceedings of the National Academy of Sciences
, vol.84
, Issue.20
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
22
-
-
0026502006
-
Direct evidence for the effect of transcription on local DNA supercoiling in-vivo
-
A. R. Rahmouni and R. D. Wells, "Direct evidence for the effect of transcription on local DNA supercoiling in-vivo", Journal of molecular biology, vol. 223, no. 1, pp. 131-144, 1992.
-
(1992)
Journal of Molecular Biology
, vol.223
, Issue.1
, pp. 131-144
-
-
Rahmouni, A.R.1
Wells, R.D.2
-
23
-
-
33645052194
-
Growth inhibition mediated by excess negative supercoiling: The interplay between transcription elongation, r-loop formation and DNA topology
-
M. Drolet, "Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, r-loop formation and DNA topology", Molecular microbiology, vol. 59, no. 3, pp. 723-730, 2006.
-
(2006)
Molecular Microbiology
, vol.59
, Issue.3
, pp. 723-730
-
-
Drolet, M.1
-
24
-
-
0023430342
-
Changes in the linking number of supercoiled DNA accompany growth transitions in escherichia coli
-
V. L. Balke and J. D. Gralla, "Changes in the linking number of supercoiled DNA accompany growth transitions in escherichia coli.", Journal of bacteriology, vol. 169, no. 10, pp. 4499-4506, 1987.
-
(1987)
Journal of Bacteriology
, vol.169
, Issue.10
, pp. 4499-4506
-
-
Balke, V.L.1
Gralla, J.D.2
-
25
-
-
77955102352
-
Quantifying E. Coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Y. Taniguchi, P. J. Choi, G. Li, H. Chen, M. Babu, J. Hearn, A. Emili, and X. S. Xie, "Quantifying e. coli proteome and transcriptome with single-molecule sensitivity in single cells", Science, vol. 329, no. 5991, pp. 533-538, 2010.
-
(2010)
Science
, vol.329
, Issue.5991
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.3
Chen, H.4
Babu, M.5
Hearn, J.6
Emili, A.7
Xie, X.S.8
|