-
1
-
-
84942874856
-
Early infancy microbial and metabolic alterations affect risk of childhood asthma
-
Arrieta, M. C. et al. Early infancy microbial and metabolic alterations affect risk of childhood asthma. Sci. Transl. Med. 7, 307ra152 (2015).
-
(2015)
Sci. Transl. Med.
, vol.7
, pp. 307ra152
-
-
Arrieta, M.C.1
-
2
-
-
33747771435
-
Worldwide time trends in the prevalence of symptoms of asthma, allergic rhinoconjunctivitis, and eczema in childhood
-
Asher, M. I. et al. Worldwide time trends in the prevalence of symptoms of asthma, allergic rhinoconjunctivitis, and eczema in childhood. Lancet 368, 733-743 (2006).
-
(2006)
Lancet
, vol.368
, pp. 733-743
-
-
Asher, M.I.1
-
3
-
-
77952762424
-
Beyond atopy: Multiple patterns of sensitization in relation to asthma in a birth cohort study
-
Simpson, A. et al. Beyond atopy: multiple patterns of sensitization in relation to asthma in a birth cohort study. Am. J. Respir. Crit. Care Med. 181, 1200-1206 (2010).
-
(2010)
Am. J. Respir. Crit. Care Med.
, vol.181
, pp. 1200-1206
-
-
Simpson, A.1
-
4
-
-
54849410642
-
Prenatal exposure to household pets influences fetal immunoglobulin e production
-
Aichbhaumik, N. et al. Prenatal exposure to household pets influences fetal immunoglobulin E production. Clin. Exp. Allergy 38, 1787-1794 (2008).
-
(2008)
Clin. Exp. Allergy
, vol.38
, pp. 1787-1794
-
-
Aichbhaumik, N.1
-
5
-
-
84906944572
-
Atopic phenotypes identified with latent class analyses at age 2 years
-
Havstad, S. et al. Atopic phenotypes identified with latent class analyses at age 2 years. J. Allergy Clin. Immunol. 134, 722-727. e2 (2014).
-
(2014)
J. Allergy Clin. Immunol.
, vol.134
, pp. 722-727e2
-
-
Havstad, S.1
-
6
-
-
84879148662
-
Archaea and fungi of the human gut microbiome: Correlations with diet and bacterial residents
-
Hoffmann, C. et al. Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents. PLoS One 8, e66019 (2013).
-
(2013)
PLoS One
, vol.8
, pp. e66019
-
-
Hoffmann, C.1
-
7
-
-
84856521514
-
Dirichlet multinomial mixtures: Generative models for microbial metagenomics
-
Holmes, I., Harris, K. & Quince, C. Dirichlet multinomial mixtures: generative models for microbial metagenomics. PLoS One 7, e30126 (2012).
-
(2012)
PLoS One
, vol.7
, pp. e30126
-
-
Holmes, I.1
Harris, K.2
Quince, C.3
-
8
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille, M. G. I. et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 31, 814-821 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 814-821
-
-
Langille, M.G.I.1
-
9
-
-
84955330067
-
Eicosapentaenoic acid and docosapentaenoic acid monoglycerides are more potent than docosahexaenoic acid monoglyceride to resolve inflammation in a rheumatoid arthritis model
-
Morin, C., Blier, P. U. & Fortin, S. Eicosapentaenoic acid and docosapentaenoic acid monoglycerides are more potent than docosahexaenoic acid monoglyceride to resolve inflammation in a rheumatoid arthritis model. Arthritis Res. Ther. 17, 142 (2015).
-
(2015)
Arthritis Res. Ther.
, vol.17
, pp. 142
-
-
Morin, C.1
Blier, P.U.2
Fortin, S.3
-
10
-
-
84929955957
-
Dihomo-?-linolenic acid prevents the development of atopic dermatitis through prostaglandin D1 production in NC/Tnd mice
-
Amagai, Y. et al. Dihomo-?-linolenic acid prevents the development of atopic dermatitis through prostaglandin D1 production in NC/Tnd mice. J. Dermatol. Sci. 79, 30-37 (2015).
-
(2015)
J. Dermatol. Sci.
, vol.79
, pp. 30-37
-
-
Amagai, Y.1
-
11
-
-
84864465909
-
Human milk oligosaccharides: Every baby needs a sugar mama
-
Bode, L. Human milk oligosaccharides: every baby needs a sugar mama. Glycobiology 22, 1147-1162 (2012).
-
(2012)
Glycobiology
, vol.22
, pp. 1147-1162
-
-
Bode, L.1
-
12
-
-
84884591440
-
Bioengineered 2?-fucosyllactose and 3-fucosyllactose inhibit the adhesion of Pseudomonas aeruginosa and enteric pathogens to human intestinal and respiratory cell lines
-
Weichert, S. et al. Bioengineered 2?-fucosyllactose and 3-fucosyllactose inhibit the adhesion of Pseudomonas aeruginosa and enteric pathogens to human intestinal and respiratory cell lines. Nutr. Res. 33, 831-838 (2013).
-
(2013)
Nutr. Res.
, vol.33
, pp. 831-838
-
-
Weichert, S.1
-
13
-
-
58549095910
-
Selective progressive response of soil microbial community to wild oat roots
-
DeAngelis, K. M. et al. Selective progressive response of soil microbial community to wild oat roots. ISME J. 3, 168-178 (2009).
-
(2009)
ISME J.
, vol.3
, pp. 168-178
-
-
DeAngelis, K.M.1
-
14
-
-
79952005915
-
Et al Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso, J. G. et al Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc. Natl. Acad. Sci. USA 108 (Suppl.), 4516-4522 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
-
15
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso, J. G. et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 6, 1621-1624 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
-
16
-
-
80054913451
-
FLASH: Fast length adjustment of short reads to improve genome assemblies
-
Magoc?, T. & Salzberg, S. L. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957-2963 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2957-2963
-
-
Magoc, T.1
Salzberg, S.L.2
-
17
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
18
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. & Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-2200 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
19
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
20
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D. et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 6, 610-618 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
-
21
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso, J. G. et al. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26, 266-267 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
-
22
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price, M. N., Dehal, P. S. & Arkin, A. P. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5, e9490 (2010).
-
(2010)
PLoS One
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
23
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. journal 17, 10-12 (2011).
-
(2011)
EMBnet. Journal
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
24
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996-998 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
25
-
-
77954748234
-
The UNITE database for molecular identification of fungi-recent updates and future perspectives
-
Abarenkov, K. et al. The UNITE database for molecular identification of fungi-recent updates and future perspectives. New Phytol. 186, 281-285 (2010).
-
(2010)
New Phytol.
, vol.186
, pp. 281-285
-
-
Abarenkov, K.1
-
26
-
-
84990199289
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B 57, 289-300 (1995).
-
(1995)
J. Roy. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
27
-
-
0346039286
-
Development of a new protocol for 2-day generation of mature dendritic cells from human monocytes
-
Obermaier, B. et al. Development of a new protocol for 2-day generation of mature dendritic cells from human monocytes. Biol. Proced. Online 5, 197-203 (2003).
-
(2003)
Biol. Proced. Online
, vol.5
, pp. 197-203
-
-
Obermaier, B.1
-
28
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone, C. & Knight, R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-8235 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
29
-
-
84991526597
-
EMPeror: A tool for visualizing high-throughput microbial community data
-
Vázquez-Baeza, Y., Pirrung, M., Gonzalez, A. & Knight, R. EMPeror: a tool for visualizing high-throughput microbial community data. Gigascience 2, 16 (2013).
-
(2013)
Gigascience
, vol.2
, pp. 16
-
-
Vázquez-Baeza, Y.1
Pirrung, M.2
Gonzalez, A.3
Knight, R.4
-
30
-
-
79960004119
-
Interactive Tree of Life v2: Online annotation and display of phylogenetic trees made easy
-
Letunic, I. & Bork, P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39, W475-W478 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
-
31
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks cytoscape
-
Shannon, P. et al. Cytoscape: A software environment for integrated models of biomolecular interaction networks cytoscape. Genome Res. 13, 2498-2504 (2003).
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
|