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Volumn 113, Issue 37, 2016, Pages 10376-10381

Captivity humanizes the primate microbiome

(17)  Clayton, Jonathan B a,b   Vangay, Pajau a   Huang, Hu a   Ward, Tonya a   Hillmann, Benjamin M c   Al Ghalith, Gabriel A a   Travis, Dominic A a   Long, Ha Thang b,d   Van Tuan, Bui b   Van Minh, Vo e   Cabana, Francis f   Nadler, Tilo g   Toddes, Barbara h   Murphy, Tami i   Glander, Kenneth E j   Johnson, Timothy J a,b   Knights, Dan a,c  


Author keywords

Dietary fiber; Dysbiosis; Human microbiome; Microbial ecology; Primate microbiome

Indexed keywords

RNA 16S;

EID: 84987602243     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1521835113     Document Type: Article
Times cited : (356)

References (42)
  • 1
    • 84907525188 scopus 로고    scopus 로고
    • Microbial imbalance and intestinal pathologies: Connections and contributions
    • Yang Y, Jobin C (2014) Microbial imbalance and intestinal pathologies: Connections and contributions. Dis Model Mech 7(10):1131-1142.
    • (2014) Dis Model Mech , vol.7 , Issue.10 , pp. 1131-1142
    • Yang, Y.1    Jobin, C.2
  • 2
    • 84902660778 scopus 로고    scopus 로고
    • Defining dysbiosis and its influence on host immunity and disease
    • Petersen C, Round JL (2014) Defining dysbiosis and its influence on host immunity and disease. Cell Microbiol 16(7):1024-1033.
    • (2014) Cell Microbiol , vol.16 , Issue.7 , pp. 1024-1033
    • Petersen, C.1    Round, J.L.2
  • 3
    • 84889649616 scopus 로고    scopus 로고
    • Western lifestyle: A 'master' manipulator of the intestinal microbiota?
    • Hold GL (2014) Western lifestyle: A 'master' manipulator of the intestinal microbiota? Gut 63(1):5-6.
    • (2014) Gut , vol.63 , Issue.1 , pp. 5-6
    • Hold, G.L.1
  • 4
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh PJ, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444(7122):1027-1031.
    • (2006) Nature , vol.444 , Issue.7122 , pp. 1027-1031
    • Turnbaugh, P.J.1
  • 5
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • Turnbaugh PJ, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457(7228):480-484.
    • (2009) Nature , vol.457 , Issue.7228 , pp. 480-484
    • Turnbaugh, P.J.1
  • 6
    • 41849127118 scopus 로고    scopus 로고
    • Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
    • Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI (2008) Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3(4):213-223.
    • (2008) Cell Host Microbe , vol.3 , Issue.4 , pp. 213-223
    • Turnbaugh, P.J.1    Bäckhed, F.2    Fulton, L.3    Gordon, J.I.4
  • 7
    • 84896092821 scopus 로고    scopus 로고
    • The treatment-naive microbiome in new-onset Crohn's disease
    • Gevers D, et al. (2014) The treatment-naive microbiome in new-onset Crohn's disease. Cell Host Microbe 15(3):382-392.
    • (2014) Cell Host Microbe , vol.15 , Issue.3 , pp. 382-392
    • Gevers, D.1
  • 8
    • 78650616947 scopus 로고    scopus 로고
    • Toward defining the autoimmune microbiome for type 1 diabetes
    • Giongo A, et al. (2011) Toward defining the autoimmune microbiome for type 1 diabetes. ISME J 5(1):82-91.
    • (2011) ISME J , vol.5 , Issue.1 , pp. 82-91
    • Giongo, A.1
  • 9
    • 80054722148 scopus 로고    scopus 로고
    • Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes
    • Brown CT, et al. (2011) Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS One 6(10): e25792.
    • (2011) PLoS One , vol.6 , Issue.10 , pp. e25792
    • Brown, C.T.1
  • 10
    • 84255178422 scopus 로고    scopus 로고
    • Type 1 diabetes: Role of intestinal microbiome in humans and mice
    • Boerner BP, Sarvetnick NE (2011) Type 1 diabetes: Role of intestinal microbiome in humans and mice. Ann N Y Acad Sci 1243:103-118.
    • (2011) Ann N Y Acad Sci , vol.1243 , pp. 103-118
    • Boerner, B.P.1    Sarvetnick, N.E.2
  • 11
    • 84856957894 scopus 로고    scopus 로고
    • Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity
    • Henao-Mejia J, et al. (2012) Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity. Nature 482(7384):179-185.
    • (2012) Nature , vol.482 , Issue.7384 , pp. 179-185
    • Henao-Mejia, J.1
  • 12
    • 84873875156 scopus 로고    scopus 로고
    • Gut microbiomes of Malawian twin pairs discordant for kwashiorkor
    • Smith MI, et al. (2013) Gut microbiomes of Malawian twin pairs discordant for kwashiorkor. Science 339(6119):548-554.
    • (2013) Science , vol.339 , Issue.6119 , pp. 548-554
    • Smith, M.I.1
  • 13
    • 3042590934 scopus 로고    scopus 로고
    • The causes of intestinal dysbiosis: A review
    • Hawrelak JA, Myers SP (2004) The causes of intestinal dysbiosis: A review. Altern Med Rev 9(2):180-197.
    • (2004) Altern Med Rev , vol.9 , Issue.2 , pp. 180-197
    • Hawrelak, J.A.1    Myers, S.P.2
  • 14
    • 84925541323 scopus 로고    scopus 로고
    • Complex host genetics influence the microbiome in inflammatory bowel disease
    • Knights D, et al. (2014) Complex host genetics influence the microbiome in inflammatory bowel disease. Genome Med 6(12):107.
    • (2014) Genome Med , vol.6 , Issue.12 , pp. 107
    • Knights, D.1
  • 15
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu GD, et al. (2011) Linking long-term dietary patterns with gut microbial enterotypes. Science 334(6052):105-108.
    • (2011) Science , vol.334 , Issue.6052 , pp. 105-108
    • Wu, G.D.1
  • 16
    • 70350110294 scopus 로고    scopus 로고
    • High-fat diet determines the composition of the murine gut microbiome independently of obesity
    • Hildebrandt MA, et al. (2009) High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology 137(5):1716-1724.
    • (2009) Gastroenterology , vol.137 , Issue.5 , pp. 1716-1724
    • Hildebrandt, M.A.1
  • 17
    • 79956301905 scopus 로고    scopus 로고
    • Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
    • Muegge BD, et al. (2011) Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332(6032):970-974.
    • (2011) Science , vol.332 , Issue.6032 , pp. 970-974
    • Muegge, B.D.1
  • 18
    • 84968918909 scopus 로고    scopus 로고
    • Population-level analysis of gut microbiome variation
    • Falony G, et al. (2016) Population-level analysis of gut microbiome variation. Science 352(6285):560-564.
    • (2016) Science , vol.352 , Issue.6285 , pp. 560-564
    • Falony, G.1
  • 19
    • 84968901892 scopus 로고    scopus 로고
    • Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
    • LifeLines cohort study
    • Zhernakova A, et al.; LifeLines cohort study (2016) Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science 352(6285):565-569.
    • (2016) Science , vol.352 , Issue.6285 , pp. 565-569
    • Zhernakova, A.1
  • 20
    • 84889681706 scopus 로고    scopus 로고
    • Western diet induces dysbiosis with increased Ecoli in CEABAC10 mice, alters host barrier function favouring AIEC colonisation
    • Martinez-Medina M, et al. (2014) Western diet induces dysbiosis with increased Ecoli in CEABAC10 mice, alters host barrier function favouring AIEC colonisation. Gut 63(1): 116-124.
    • (2014) Gut , vol.63 , Issue.1 , pp. 116-124
    • Martinez-Medina, M.1
  • 21
    • 14544275997 scopus 로고    scopus 로고
    • st century
    • Cordain L, et al. (2005) Origins and evolution of the Western diet: Health implications for the 21st century. Am J Clin Nutr 81(2):341-354.
    • (2005) Am J Clin Nutr , vol.81 , Issue.2 , pp. 341-354
    • Cordain, L.1
  • 22
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R (2005) UniFrac: A new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71(12):8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 23
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko T, et al. (2012) Human gut microbiome viewed across age and geography. Nature 486(7402):222-227.
    • (2012) Nature , vol.486 , Issue.7402 , pp. 222-227
    • Yatsunenko, T.1
  • 24
    • 34047185356 scopus 로고    scopus 로고
    • Molecular analyses of the intestinal microbiota of chimpanzees in the wild and in captivity
    • Uenishi G, et al. (2007) Molecular analyses of the intestinal microbiota of chimpanzees in the wild and in captivity. Am J Primatol 69(4):367-376.
    • (2007) Am J Primatol , vol.69 , Issue.4 , pp. 367-376
    • Uenishi, G.1
  • 25
    • 78649978358 scopus 로고    scopus 로고
    • Evolutionary relationships of wild hominids recapitulated by gut microbial communities
    • Ochman H, et al. (2010) Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol 8(11):e1000546.
    • (2010) PLoS Biol , vol.8 , Issue.11 , pp. e1000546
    • Ochman, H.1
  • 26
    • 84954099831 scopus 로고    scopus 로고
    • Diet-induced extinctions in the gut microbiota compound over generations
    • Sonnenburg ED, et al. (2016) Diet-induced extinctions in the gut microbiota compound over generations. Nature 529(7585):212-215.
    • (2016) Nature , vol.529 , Issue.7585 , pp. 212-215
    • Sonnenburg, E.D.1
  • 27
    • 84929094853 scopus 로고    scopus 로고
    • Fat, fibre and cancer risk in African Americans and rural Africans
    • O?Keefe SJD, et al. (2015) Fat, fibre and cancer risk in African Americans and rural Africans. Nat Commun 6:6342.
    • (2015) Nat Commun , vol.6 , pp. 6342
    • O'Keefe, S.J.D.1
  • 28
    • 85059120776 scopus 로고    scopus 로고
    • The socioecology of red-shanked doucs (Pygathrix nemaeus)
    • Vietnam. PhD dissertation (University of Colorado, Boulder)
    • Ulibarri LR (2013) The socioecology of red-shanked doucs (Pygathrix nemaeus) in Son Tra Nature Reserve, Vietnam. PhD dissertation (University of Colorado, Boulder).
    • (2013) Son Tra Nature Reserve
    • Ulibarri, L.R.1
  • 30
    • 84884127512 scopus 로고    scopus 로고
    • Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
    • Langille MGI, et al. (2013) Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol 31(9):814-821.
    • (2013) Nat Biotechnol , vol.31 , Issue.9 , pp. 814-821
    • Langille, M.G.I.1
  • 31
    • 84931355745 scopus 로고    scopus 로고
    • Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
    • Weingarden A, et al. (2015) Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection. Microbiome 3:10.
    • (2015) Microbiome , vol.3 , pp. 10
    • Weingarden, A.1
  • 32
    • 84964514022 scopus 로고    scopus 로고
    • Pretreatment gut microbiome predicts chemotherapyrelated bloodstream infection
    • Montassier E, et al. (2016) Pretreatment gut microbiome predicts chemotherapyrelated bloodstream infection. Genome Med 8(1):49.
    • (2016) Genome Med , vol.8 , Issue.1 , pp. 49
    • Montassier, E.1
  • 34
    • 84928587108 scopus 로고    scopus 로고
    • The gut microbiota of rural Papua New Guineans: Composition, diversity patterns, and ecological processes
    • Martínez I, et al. (2015) The gut microbiota of rural Papua New Guineans: Composition, diversity patterns, and ecological processes. Cell Reports 11(4):527-538.
    • (2015) Cell Reports , vol.11 , Issue.4 , pp. 527-538
    • Martínez, I.1
  • 35
    • 84919473614 scopus 로고    scopus 로고
    • Rapid changes in the gut microbiome during human evolution
    • Moeller AH, et al. (2014) Rapid changes in the gut microbiome during human evolution. Proc Natl Acad Sci USA 111(46):16431-16435.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.46 , pp. 16431-16435
    • Moeller, A.H.1
  • 36
    • 84996584385 scopus 로고    scopus 로고
    • The microbiome of uncontacted Amerindians
    • Clemente JC, et al. (2015) The microbiome of uncontacted Amerindians. Sci Adv 1(3): e1500183.
    • (2015) Sci Adv , vol.1 , Issue.3 , pp. e1500183
    • Clemente, J.C.1
  • 37
    • 80052722544 scopus 로고    scopus 로고
    • Meeting report: The terabase metagenomics workshop and the vision of an Earth microbiome project
    • Gilbert JA, et al. (2010) Meeting report: The terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci 3(3):243-248.
    • (2010) Stand Genomic Sci , vol.3 , Issue.3 , pp. 243-248
    • Gilbert, J.A.1
  • 38
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335-336.
    • (2010) Nat Methods , vol.7 , Issue.5 , pp. 335-336
    • Caporaso, J.G.1
  • 39
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, et al. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72(7):5069-5072.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.7 , pp. 5069-5072
    • DeSantis, T.Z.1
  • 40
    • 38949207343 scopus 로고    scopus 로고
    • Studies on the preservation of the intestinal microbiota's DNA in human mummies from cold environments
    • Rollo F, Ermini L, Luciani S, Marota I, Olivieri C (2006) Studies on the preservation of the intestinal microbiota's DNA in human mummies from cold environments. Med Secoli 18(3):725-740.
    • (2006) Med Secoli , vol.18 , Issue.3 , pp. 725-740
    • Rollo, F.1    Ermini, L.2    Luciani, S.3    Marota, I.4    Olivieri, C.5
  • 41
    • 84871194834 scopus 로고    scopus 로고
    • Insights from characterizing extinct human gut microbiomes
    • Tito RY, et al. (2012) Insights from characterizing extinct human gut microbiomes PLoS One 7(12):e51146.
    • (2012) PLoS One , vol.7 , Issue.12 , pp. e51146
    • Tito, R.Y.1
  • 42
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K (2004) APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20(2):289-290.
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.