-
1
-
-
84965169038
-
Identification of Salmonella for public health surveillance using whole genome sequencing
-
Ashton, P. M., Nair, S., Peters, T. M., Bale, J. A., Powell, D. G., Painset, A., Tewolde, R., Schaefer, U., Jenkins, C. & other authors (2016). Identification of Salmonella for public health surveillance using whole genome sequencing. PeerJ 4, e1752.
-
(2016)
Peerj
, vol.4
-
-
Ashton, P.M.1
Nair, S.2
Peters, T.M.3
Bale, J.A.4
Powell, D.G.5
Painset, A.6
Tewolde, R.7
Schaefer, U.8
Jenkins, C.9
-
2
-
-
84937728010
-
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: A crosssectional study
-
Baker, K. S., Dallman, T. J., Ashton, P. M., Day, M., Hughes, G., Crook, P. D., Gilbart, V. L., Zittermann, S., Allen, V. G. & other authors (2015). Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a crosssectional study. Lancet Infect Dis 15, 913–921.
-
(2015)
Lancet Infect Dis
, vol.15
, pp. 913-921
-
-
Baker, K.S.1
Dallman, T.J.2
Ashton, P.M.3
Day, M.4
Hughes, G.5
Crook, P.D.6
Gilbart, V.L.7
Zittermann, S.8
Allen, V.G.9
-
3
-
-
0030008407
-
Phage typing and drug resistance of Shigella sonnei isolated in England and Wales
-
Bentley, C. A., Frost, J. A. & Rowe, B. (1996). Phage typing and drug resistance of Shigella sonnei isolated in England and Wales. Epidemiol Infect 116, 295–302.
-
(1996)
Epidemiol Infect
, vol.116
, pp. 295-302
-
-
Bentley, C.A.1
Frost, J.A.2
Rowe, B.3
-
4
-
-
85181549299
-
Ongoing outbreak of Shigella flexneri serotype 3a in men who have sex with men in England and Wales, data from 2009- 2011
-
Borg, M. L., Modi, A., Tostmann, A., Gobin, M., Cartwright, J., Quigley, C., Crook, P., Boxall, N., Paul, J. & other authors (2012). Ongoing outbreak of Shigella flexneri serotype 3a in men who have sex with men in England and Wales, data from 2009- 2011. Euro Surveill 17, pii: 20137.
-
(2012)
Euro Surveill 17, Pii
, pp. 20137
-
-
Borg, M.L.1
Modi, A.2
Tostmann, A.3
Gobin, M.4
Cartwright, J.5
Quigley, C.6
Crook, P.7
Boxall, N.8
Paul, J.9
-
5
-
-
84931058824
-
Notes from the field: Outbreaks of Shigella sonnei infection with decreased susceptibility to azithromycin among men who have sex with men – Chicago and Metropolitan Minneapolis-St. Paul, 2014
-
Bowen, A., Eikmeier, D., Talley, P., Siston, A., Smith, S., Hurd, J., Smith, K., Leano, F., Bicknese, A. & other authors (2015). Notes from the field: outbreaks of Shigella sonnei infection with decreased susceptibility to azithromycin among men who have sex with men – Chicago and Metropolitan Minneapolis-St. Paul, 2014. MMWR Morb Mortal Wkly Rep 64, 597–598.
-
(2015)
MMWR Morb Mortal Wkly Rep
, vol.64
, pp. 597-598
-
-
Bowen, A.1
Eikmeier, D.2
Talley, P.3
Siston, A.4
Smith, S.5
Hurd, J.6
Smith, K.7
Leano, F.8
Bicknese, A.9
-
6
-
-
84938574900
-
Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157
-
Dallman, T. J., Byrne, L., Ashton, P. M., Cowley, L. A., Perry, N. T., Adak, G., Petrovska, L., Ellis, R. J., Elson, R. & other authors (2015). Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157. Clin Infect Dis 61, 305–312.
-
(2015)
Clin Infect Dis
, vol.61
, pp. 305-312
-
-
Dallman, T.J.1
Byrne, L.2
Ashton, P.M.3
Cowley, L.A.4
Perry, N.T.5
Adak, G.6
Petrovska, L.7
Ellis, R.J.8
Elson, R.9
-
7
-
-
33846459422
-
Another perfect storm: Shigella, men who have sex with men, and HIV
-
Daskalakis, D. C. & Blaser, M. J. (2007). Another perfect storm: Shigella, men who have sex with men, and HIV. Clin Infect Dis 44, 335–337.
-
(2007)
Clin Infect Dis
, vol.44
, pp. 335-337
-
-
Daskalakis, D.C.1
Blaser, M.J.2
-
8
-
-
0030596455
-
Outbreaks of infectious intestinal disease in schools and nurseries in England and Wales 1992 to 1994
-
Evans, H. S. & Maguire, H. (1996). Outbreaks of infectious intestinal disease in schools and nurseries in England and Wales 1992 to 1994. Commun Dis Rep CDR Rev 6, R103–108.
-
(1996)
Commun Dis Rep CDR Rev
, vol.6
, pp. R103-R108
-
-
Evans, H.S.1
Maguire, H.2
-
9
-
-
84951567295
-
Sex, drugs and smart phone applications: Findings from semistructured interviews with men who have sex with men diagnosed with Shigella flexneri 3a in England and Wales
-
Gilbart, V. L., Simms, I., Jenkins, C., Furegato, M., Gobin, M., Oliver, I., Hart, G., Gill, O. N. & Hughes, G. (2015). Sex, drugs and smart phone applications: findings from semistructured interviews with men who have sex with men diagnosed with Shigella flexneri 3a in England and Wales. Sex Transm Infect 91, 598–602.
-
(2015)
Sex Transm Infect
, vol.91
, pp. 598-602
-
-
Gilbart, V.L.1
Simms, I.2
Jenkins, C.3
Furegato, M.4
Gobin, M.5
Oliver, I.6
Hart, G.7
Gill, O.N.8
Hughes, G.9
-
10
-
-
84885182833
-
High rates of quinolone-resistant strains of Shigella sonnei in HIV-infected MSM
-
Hoffmann, C., Sahly, H., Jessen, A., Ingiliz, P., Stellbrink, H. J., Neifer, S., Schewe, K., Dupke, S., Baumgarten, A. & other authors (2013). High rates of quinolone-resistant strains of Shigella sonnei in HIV-infected MSM. Infection 41, 999–1003.
-
(2013)
Infection
, vol.41
, pp. 999-1003
-
-
Hoffmann, C.1
Sahly, H.2
Jessen, A.3
Ingiliz, P.4
Stellbrink, H.J.5
Neifer, S.6
Schewe, K.7
Dupke, S.8
Baumgarten, A.9
-
11
-
-
0032879806
-
Global burden of Shigella infections: Implications for vaccine development and implementation of control strategies
-
Kotloff, K. L., Winickoff, J. P., Ivanoff, B., Clemens, J. D., Swerdlow, D. L., Sansonetti, P. J., Adak, G. K. & Levine, M. M. (1999). Global burden of Shigella infections: implications for vaccine development and implementation of control strategies. Bull World Health Organ 77, 651–666.
-
(1999)
Bull World Health Organ
, vol.77
, pp. 651-666
-
-
Kotloff, K.L.1
Winickoff, J.P.2
Ivanoff, B.3
Clemens, J.D.4
Swerdlow, D.L.5
Sansonetti, P.J.6
Adak, G.K.7
Levine, M.M.8
-
12
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. (2010). Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26, 589–595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
13
-
-
84893131713
-
Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK
-
McDonnell, J., Dallman, T., Atkin, S., Turbitt, D. A., Connor, T. R., Grant, K. A., Thomson, N. R. & Jenkins, C. (2013). Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK. Epidemiol Infect 141, 2568–2575.
-
(2013)
Epidemiol Infect
, vol.141
, pp. 2568-2575
-
-
McDonnell, J.1
Dallman, T.2
Atkin, S.3
Turbitt, D.A.4
Connor, T.R.5
Grant, K.A.6
Thomson, N.R.7
Jenkins, C.8
-
14
-
-
77956295988
-
The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S. & other authors (2010). The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20, 1297–1303.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
-
15
-
-
33749032426
-
Shigella sonnei outbreak among homosexual men, London
-
Morgan, O., Crook, P., Cheasty, T., Jiggle, B., Giraudon, I., Hughes, H. & Jones, S. M. (2006). Shigella sonnei outbreak among homosexual men, London. Emerg Infect Dis 12, 1458–1460.
-
(2006)
Emerg Infect Dis
, vol.12
, pp. 1458-1460
-
-
Morgan, O.1
Crook, P.2
Cheasty, T.3
Jiggle, B.4
Giraudon, I.5
Hughes, H.6
Jones, S.M.7
-
16
-
-
84869398366
-
Shifting dominance of Shigella species in men who have sex with men
-
Ratnayake, R., Allard, R. & Pilon, P. A. (2012). Shifting dominance of Shigella species in men who have sex with men. Epidemiol Infect 140, 2082–2086.
-
(2012)
Epidemiol Infect
, vol.140
, pp. 2082-2086
-
-
Ratnayake, R.1
Allard, R.2
Pilon, P.A.3
-
17
-
-
84928402373
-
Intensified shigellosis epidemic associated with sexual transmission in men who have sex with men – Shigella flexneri and S. Sonnei in England, 2004 to end of February 2015
-
Simms, I., Field, N., Jenkins, C., Childs, T., Gilbart, V., Dallman, T., Mook, P., Crook, P. & Hughes, G. (2015). Intensified shigellosis epidemic associated with sexual transmission in men who have sex with men – Shigella flexneri and S. sonnei in England, 2004 to end of February 2015. Euro Surveill 20, pii: 21097.
-
(2015)
Euro Surveill
, vol.20
-
-
Simms, I.1
Field, N.2
Jenkins, C.3
Childs, T.4
Gilbart, V.5
Dallman, T.6
Mook, P.7
Crook, P.8
Hughes, G.9
-
18
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and postanalysis of large phylogenies
-
Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and postanalysis of large phylogenies. Bioinformatics 30, 1312–1313.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
19
-
-
84934776957
-
The rising dominance of Shigella sonnei: An intercontinental shift in the etiology of bacillary dysentery
-
Thompson, C. N., Duy, P. T. & Baker, S. (2015). The rising dominance of Shigella sonnei: an intercontinental shift in the etiology of bacillary dysentery. PLoS Negl Trop Dis 9, e0003708.
-
(2015)
Plos Negl Trop Dis
, vol.9
-
-
Thompson, C.N.1
Duy, P.T.2
Baker, S.3
-
20
-
-
84941641487
-
Shigellosis in subjects with traveler’s diarrhea versus domestically acquired diarrhea: Implications for antimicrobial therapy and human immunodeficiency virus surveillance
-
Toro, C., Arroyo, A., Sarria, A., Iglesias, N., Enríquez, A., Baquero, M. & de Guevara, C. L. (2015). Shigellosis in subjects with traveler’s diarrhea versus domestically acquired diarrhea: implications for antimicrobial therapy and human immunodeficiency virus surveillance. Am J Trop Med Hyg 93, 491–496
-
(2015)
Am J Trop Med Hyg
, vol.93
, pp. 491-496
-
-
Toro, C.1
Arroyo, A.2
Sarria, A.3
Iglesias, N.4
Enríquez, A.5
Baquero, M.6
De Guevara, C.L.7
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