Whole-genome duplication as a key factor in crop domestication

Nature Plants

Volumn 2, Issue 8, 2016, Pages

  Salman Minkov, Ayelet ^a   Sabath, Niv ^a   Mayrose, Itay ^a  

^a TEL AVIV UNIVERSITY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

CROP; DOMESTICATION; GENE DUPLICATION; GENETICS; PLANT GENOME; POLYPLOIDY;

CROPS, AGRICULTURAL; DOMESTICATION; GENE DUPLICATION; GENOME, PLANT; POLYPLOIDY;

EID: 84985896384     PISSN: None     EISSN: 20550278     Source Type: Journal    
DOI: 10.1038/NPLANTS.2016.115     Document Type: Article

References (34)

1. Meyer, R. S., DuVal, A. E. & Jensen, H. R. Patterns and processes in crop domestication: An historical review and quantitative analysis of 203 global food crops. New Phytol. 196, 29-48 (2012).
2. Gepts, P. in Plant Breeding Reviews: Long-term Selection: Crops, Animals, and Bacteria Vol. 24 (ed. Janick, J.) 1-44 (John Wiley & Sons, Inc., 2004).
3. Bennett, M. D. Perspectives on polyploidy in plants-ancient and neo. Biol. J. Linn. Soc. Lond. 82, 411-423 (2004).
4. Ross-Ibarra, J., Morrell, P. L. & Gaut, B. S. Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc. Natl Acad. Sci. USA 104, 8641-8648 (2007).
5. Pecinka, A., Fang, W., Rehmsmeier, M., Levy, A. A. & Scheid, O. M. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biol. 9, 24 (2011).
6. Renny-Byfield, S. & Wendel, J. F. Doubling down on genomes: polyploidy and crop plants. Am. J. Bot. 101, 1711-1725 (2014).
7. Paterson, A. H. Polyploidy, evolutionary opportunity, and crop adaptation. Genetica 123, 191-196 (2005).
8. Udall, J. A. & Wendel, J. F. Polyploidy and crop improvement. Crop Sci. 46, S3-S14 (2006).
9. Diamond, J. Evolution, consequences and future of plant and animal domestication. Nature 418, 700-707 (2002).
10. Hammer, K. The domestication syndrome. Die Kulturpflanze 32, 11-34 (1984).
11. Emshwiller, E. in Documenting Domestication: New Genetic And Archaeological Paradigms (eds Zeder, M. A., Bradley, D., Emshwiller, E. & Smith, B. D.) Ch. 12 (Univ. of California Press, 2006).
12. Zeven, A. C. in Polyploidy: Biological relevance (ed. Lewis, W. H.) 385-407 (Plenum, 1980).
13. Hancock, J. F. Contributions of domesticated plant studies to our understanding of plant evolution. Ann. Bot. 96, 953-963 (2005).
14. Hilu, K. Polyploidy and the evolution of domesticated plants. Am. J. Bot. 1494-1499 (1993).
15. Rice, A. et al. The chromosome counts database (CCDB)-a community resource of plant chromosome numbers. New Phytol. 206, 19-26 (2015).
16. Glick, L. & Mayrose, I. ChromEvol: Assessing the pattern of chromosome number evolution and the inference of polyploidy along a phylogeny. Mol. Biol. Evol. 31, 1914-1922 (2014).
17. Plant DNA C-values database. http://data.kew.org/cvalues (2012).
18. Wood, T. E. et al. The frequency of polyploid speciation in vascular plants. Proc. Natl Acad. Sci. USA 106, 13875-13879 (2009).
19. Stebbins, G. L. Cytological characteristics associated with the different growth habits in the dicotyledons. Am. J. Bot. 25, 189-198 (1938).
20. Fuller, D. Q. Contrasting patterns in crop domestication and domestication rates: Recent archaeobotanical insights from the Old World. Ann. Bot. 100, 903-924 (2007).
21. De Wett, J. M. J. in Grass Systematics and Evolution (eds Soderstorm, T. R., Hilu, K. W., Campbell, C. S. & Barkworth, M. A.) 188-194 (Smithsonian Institution Press, 1987).
22. Ramsey, J. & Schemske, D. W. Neopolyploidy in flowering plants. Annu. Rev. Ecol. Syst. 33, 589-639 (2002).
23. Fuller, D. Q. & Harvey, E. L. The archaeobotany of Indian pulses: identification, processing and evidence for cultivation. Environ. Archaeol. 11, 219-246 (2006).
24. Wu, J. H. et al. Induced polyploidy dramatically increases the size and alters the shape of fruit in Actinidia chinensis. Ann. Bot. 109, 169-179 (2012).
25. Te Beest, M. et al. The more the better? The role of polyploidy in facilitating plant invasions. Ann. Bot. 109, 19-45 (2011).
26. Dempewolf, H., Hodgins, K. A., Rummell, S. E., Ellstrand, N. C. & Rieseberg, L. H. Reproductive isolation during domestication. Plant Cell 24, 2710-2717 (2012).
27. Hughes, C. E. et al. Serendipitous backyard hybridization and the origin of crops. Proc. Natl Acad. Sci. USA 104, 14389-14394 (2007).
28. Huelsenbeck, J. P., Nielsen, R. & Bollback, J. P. Stochastic mapping of morphological characters. Syst. Biol. 52, 131-158 (2003).
29. Diamond, J. Guns, Germs, and Steel. The Fates of Human Societies (WWNorton & Company, 1999).
30. Selmecki, A. M. et al. Polyploidy can drive rapid adaptation in yeast. Nature 519, 349-352 (2015).
31. R Foundation for Statistical Computing. A Language and Environment for Statistical Computing (R Core Team, 2013); https://www.R-project.org/.
32. FitzJohn, R. G. Diversitree: comparative phylogenetic analyses of diversification in R. Methods Ecol. Evol. 3, 1084-1092 (2012).
33. Escudero, M. et al. Karyotypic changes through dysploidy persist longer over evolutionary time than polyploid changes. PLoS ONE 9, e85266 (2014).
34. Mayrose, I. et al. Recently formed polyploid plants diversify at lower rates. Science 333, 1257-1257 (2011).