Xylanase superproducer: Genome sequence of a compost-loving thermophilic fungus, Thermomyces lanuginosus strain SSBP

Genome Announcements

Volumn 1, Issue 3, 2013, Pages

  Mchunu, Nokuthula Peace ^a,c   Permaul, Kugen ^a   Abdul Rahman, Ahmad Yamin ^c   Saito, Jennifer A ^b,c   Singh, Suren ^a   Alam, Maqsudul ^b,c  

^a DURBAN UNIVERSITY OF TECHNOLOGY   (South Africa)

^b UNIVERSITY OF HAWAII   (United States)

^c SCHOOL OF PHYSICS   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84983747901     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00388-13     Document Type: Article

References (13)

1. Singh S, Madlala AM, Prior BA. 2003. Thermomyces lanuginosus: properties of strains and their hemicellulases. FEMS Microbiol. Rev. 27:3-16.
2. Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort P, Culley D, Thykaer J, Frisvad CJ, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen Ml, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro A, Pangilinan H, Salamov A, Lou Y, Lindquist E, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE. 2011. Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Res. 21: 885-897.
3. Bartoszewska M, Kiel JA. 2011. The role of macroautophagy in development of filamentous fungi. Antioxid. Redox Signal. 14:2271-2287.
4. DiGuistini S, Liao NY, Platt D, Robertson G, Seidel M, Chan SK, Docking TR, Birol I, Holt RA, Hirst M, Mardis E, Marra MA, Hamelin RC, Bohlmann J, Breuil C, Jones SJM. 2009. De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data. Genome Biol. 10:R94.
5. Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Barbote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS. 2008. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat. Biotechnol. 26:553-560.
6. van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ, Garcia-Estrada C, Fedorova ND, Harris DM, Heijne WH, Joardar V, Kiel JA, Kovalchuk A, Martin JF, Nierman WC, Nijland JG, Pronk JT, Roubos JA, van der Klei IJ, van Peij NN, Veenhuis M, von Döhren H, Wagner C, Wortman J, Bovenberg RA. 2008. Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum. Nat. Biotechnol. 26:1161-1168.
7. Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M. 2008. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res. 18:188-196.
8. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. 2009. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 37:D233-D238.
9. Staszczak M. 2008. The role of the ubiquitin-proteasome system in the response of the ligninolytic fungus Trametes versicolor to nitrogen deprivation. Fungal Genet. Biol. 45:328-337.
10. Nowak SJ, Corces VG. 2004. Phosphorylation of histone H3: a balancing act between chromosome condensation and transcriptional activation. Trends Genet. 20:271-285.
11. + metabolism in health and disease. Trends Biochem. Sci. 32:9-12.
12. Berger F, Ramírez-Hernández MH, Ziegler M. 2004. The new life of a centenarian: signalling functions of NAD(P). Trends Biochem. Sci. 29: 111-118.
13. Corda D, Di Girolamo M. 2003. Functional aspects of protein mono-ADP-ribosylation. EMBO J. 22:1953-1958.