Dynamics of various viral groups infecting autotrophic plankton in Lake Geneva

Advances in Oceanography and Limnology

Volumn 3, Issue 2, 2012, Pages 171-191

  Parvathi, Ammini ^a,b   Zhong, X ^b   Jacquet, Stéphan ^b  

^a NATIONAL INSTITUTE OF OCEANOGRAPHY   (India)

^b UMR CARRTEL   (France)

Author keywords

algal viruses; cyanophages; PCR DGGE; PFGE; qPCR; virus

Indexed keywords

ABUNDANCE; CARBON FIXATION; COMMUNITY DYNAMICS; COMMUNITY STRUCTURE; CYANOBACTERIUM; ELECTROKINESIS; FLOW CYTOMETRY; PHYTOPLANKTON; POLYMERASE CHAIN REACTION; VIRUS;

LAKE GENEVA;

EID: 84983557375     PISSN: 19475721     EISSN: 1947573X     Source Type: Journal    
DOI: 10.1080/19475721.2012.738157     Document Type: Article

References (55)

1. Partensky, F, Hess, WR and Vaulot, D. 1999. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol. Mol. Biol. Rev., 63: 106-127.
2. Callieri, C. 2010. Single cells and microcolonies of freshwater picocyanobacteria: A common ecology. J. Limnol., 69: 257-277.
3. Wommack, KE and Colwell, RR. 2000. Virioplankton: Viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev., 64: 69-114.
4. Poorvin, L, Rinta-Kanto, JM, Hutchins, DA and Wilhelm, SW. 2004. Viral release of iron and its bioavailability to marine plankton. Limnol. Oceanogr., 49: 1734-1741.
5. Middelboe, M and Jørgensen, NOG. 2006. Viral lysis of bacteria: An important source of dissolved amino acids and cell wall compounds. J. Mar. Biol. Assoc. UK, 86: 605-612.
6. Lindell, DL, Sullivan, MB, Johnson, ZI, Tolonen, A, Rohwer, F and Chisholm, SW. 2004. Transfer of photosynthesis genes to and from Prochlorococcus viruses. PNAS, 101: 11013-11018.
7. Wilhelm, SW and Matteson, AR. 2008. Freshwater and marine virioplankton: A brief overview of commonalities and differences. Fresh. Biol., 53: 1076-1089.
8. M.G.Weinbauer, O. Bonilla-Findji, A.M. Chan, M. Agis, J.R. Dolan, S.M. Short, K. Šimek, SW. 2011. Wilhelm and C.A. Suttle, Synechococcus growth in the ocean may depend on the lysis of bacteria, J. Plank. Res. 33,: 1465-1476.
9. Suttle, CA and Chan, AM. 1994. Dynamics and distribution of cyanophages and their effect on marine Synechococcus spp. Appl. Environ. Microbiol., 60: 3167-3174.
10. Sullivan, MB, Waterbury, JB and Chisholm, SW. 2003. Cyanophages infecting the oceanic cyanobacterium. Prochlorococcus, Nature, 424: 1047-1051.
11. Chen, F, Wang, K, Huang, SJ, Cai, HY, Zhao, ML, Jiao, NZ and Wommack, E. 2009. Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences. Environ. Microbiol., 11: 2884-2892.
12. Middelboe, M, Jacquet, S and Weinbauer, MG. 2008. Viruses in freshwater ecosystems: An introduction to the exploration of viruses in new habitats. Fresh. Biol., 53: 1069-1075.
13. Jacquet, S, Miki, T, Nobel, R, Peduzzi, P and Wilhelm, SW. 2010. Viruses in aquatic ecosystems: Important advancements of the last 20 years and prospects for the future in the field of microbial oceanography and limnology. Adv. Oceanogr. Limnol., 1: 97-141.
14. Suttle, CA. 2007. Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol., 5: 801-812.
15. Short, SM. 2012. The ecology of viruses that infect eukaryotic algae. Environ. Microbiol., 14: 2253-2271.
16. Sullivan, MB, Coleman, MC, Quinlivan, V, Rosenkrantz, JE, DeFrancesco, AS, Tan, G, Fu, R, Lee, JA, Waterbury, JB, Bielawski, JP and Chisholm, SW. 2008. Portal protein diversity and phage ecology. Environ. Microbiol., 10: 2810-2823.
17. Rohwer, F and Edwards, R. 2002. The phage proteomic tree: A genome-based taxonomy for phage. J. Bacteriol., 184: 4529-4535.
18. Zhong, Y, Chen, F, Wilhelm, SW, Poorvin, L and Hodson, RE. 2002. Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20. Appl. Environ. Microbiol., 68: 1576-1584.
19. Frederickson, CM, Short, SM and Suttle, CA. 2003. The physical environment affects cyanophage communities in British Columbia Inlets. Microb. Ecol., 46: 348-357.
20. Dorigo, U, Jacquet, S and Humbert, JF. 2004. Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl. Environ. Microbiol., 70: 1017-1022.
21. Wilhelm, SW, Carberry, MJ, Eldridge, ML, Poorvin, L, Saxton, MA and Doblin, MA. 2006. Marine and freshwater cyanophages in a Laurentian Great Lake: Evidence from infectivity assays and molecular analyses of g20 genes. Appl. Environ. Microbiol., 72: 4957-4963.
22. Chow, TCE and Fuhrman, JA. 2012. Seasonality and monthly dynamics of marine myovirus communities. Environ. Microbiol., 14: 2171-2183.
23. Clokie, MRJ, Millard, AD, Letarov, AV and Heaphy, S. 2011. Phages in nature. Bacteriophage, 1: 31-45.
24. Wang, K and Chen, F. 2008. Prevalence of highly host-specific cyanophages in the estuarine environment. Environ. Microbiol., 10: 300-312.
25. Chénard, C and Suttle, CA. 2008. Phylogenetic diversity of cyanophage photosynthetic genes (psbA) in marine and fresh waters. Appl. Environ. Microbiol., 74: 5317-5324.
26. Short, SM and Suttle, CA. 2002. Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature. Appl. Environ. Microbiol., 68: 1290-1296.
27. Short, SM and Short, CM. 2008. Diversity of algal viruses in various North American freshwater environments. Aquat. Microb. Ecol., 51: 13-21.
28. Larsen, JB, Larsen, A, Bratbak, G and Sandaa, RA. 2008. Phylogenetic analysis of members of the Phycodnaviridae virus family, using amplified fragments of the major capsid protein gene. Appl. Environ. Microbiol., 74: 3048-3057.
29. Duhamel, S, Domaizon, I, Personnic, S and Jacquet, S. 2006. Assessing the microbial community dynamics and the role of bacteriophages in bacterial mortality in Lake Geneva. Wat. Sci., 19: 115-126.
30. Personnic, S, Domaizon, I, Dorigo, U, Berdjeb, L and Jacquet, S. 2009a. Seasonal and spatial variability of virio-, bacterio-, and picophytoplanktonic abundances in three peri-alpine lakes. Hydrobiol., 627: 99-116.
31. Personnic, S, Domaizon, I, Sime-Ngando, T and Jacquet, S. 2009b. Seasonal variations of microbial abundances and virus-versus flagellate-induced mortality of picoplankton in three peri-alpine lakes. J. Plank. Res., 31: 1161-1177.
32. Anneville, O, Kaiblinger, C, Tadonléké, RD, Druart, JC and Dokulil, MT. Contribution of long-term monitoring to the European Water Framework Directive implementation. Proceedings of Taal 2007: The 12th World Lake Conference (2008), M. Sengupta and R. Dalwani (Eds.), pp. 1122-1131
33. Pelletier, JP and Orand, A. Appareil de prélèvement d'un échantillon dans un fluide, INRA Patent number 1978 76.08579
34. Von Utermöhl, H. 1931. Neue Wege in der quantitativen Erfassung des Planktons. (Mit besondere Beriicksichtigung des Ultraplanktons). Verh. Int. Verein. Theor. Angew. Limnol., 5: 567-595.
35. Vaulot, D. 1989. CYTOPC: Processing software for flow cytometric data. Signal Noise, 2: 8
36. Jacquet, S, Zhong, X, Parvathi, A and Pradeep Ram, AS. 2012. First report of a cyanophage infecting the cyanobacterium, Arthrospira platensis. J. Appl. Phycol., DOI: 10.1007/s10811-012-9853-x
37. Colombet, J, Charpin, M, Robin, A, Portelli, C, Amblard, C, Cauchie, HM and Sime-Ngando, T. 2009. Seasonal depth-related gradients in virioplankton: Standing stocks and relationships with microbial communities in Lake Pavin (France). Microb. Ecol., 58: 728-736.
38. Sandaa, RA and Larsen, A. 2006. Seasonal variation in virus-host populations in Norwegian coastal waters: Focusing on the cyanophage community infecting marine Synechococcus spp. Appl. Environ. Microbiol., 72: 4610-4618.
39. Hammer, Ø, Harper, DAT and Ryan, PD. 2001. PAST: Paleontological statistics software package for education and data analysis. Palaeontologia Electronica, 4: 9
40. Tadonléké, RD. 2010. Evidence of warming effects on phytoplankton productivity rates and their dependence on eutrophication status. Limnol. Oceanogr., 55: 973-982.
41. Cellamare, M, Rolland, A and Jacquet, S. 2010. Flow cytometric sorting of freshwater phytoplankton. J. Applied Phycol., 22: 87-100.
42. Short, SM, Chen, F and Wilhelm, SW. 2010. The construction and analysis of marker gene libraries. Manual of Aquatic Viral Ecology, 9: 82-91.
43. Sandaa., RA. Viral pool, environmental. In: Encyclopedia in Microbiology, third edition, Ed: M. Schaechter, Section: Environmental Microbiology and Ecology. 2009. Elsevier Ltd. pp. 553-567
44. Lymer, D, Lindstrom, ES and Vrede, K. 2008. Variable importance of viral-induced bacterial mortality along gradients of trophic status and humic content in lakes. Fresh. Biol., 53: 1101-1113.
45. Millard, A, Clokie, MRJ, Shub, DA and Mann, NH. 2004. Genetic organization of psbAD region in phages infecting marine Synechococcus strains. PNAS, 101: 11007-11012.
46. Mann, NH, Cook, A, Millard, A, Bailey, S and Clokie, M. 2003. Bacterial photosynthesis genes in a virus. Nature, 424: 741
47. Breitbart, M. 2012. Marine viruses: Truth or dare. Annu. Rev. Mar. Sci., 4: 425-448.
48. Berdjeb, L, Pollet, T, Domaizon, I and Jacquet, S. 2011. Effects of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes. BMC Microbiol., 11: 88
49. Millard, AD, Zwirglmaier, K, Downey, MJ, Mann, NH and Scanlan, DL. 2009. Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: Implications for mechanisms of cyanophage evolution. Environ. Microbiol., 11: 2370-2387.
50. Sharon, I, Tzahor, S, Williamson, S, Shmoish, M, Man-Aharonovich, D and Rusch, DB. 2007. S.Yooseph, G. Zeidner, S.S. Golden, S. R. Mackey, N. Adir, U. Weingart, D. Horn, J. C. Venter, Y. Mandel-Gutfreund and O. Béjà, Viral photosynthetic reaction centre genes and transcripts in the marine environment, ISME J. 1,: 492-501.
51. Sullivan, MB, Lindell, DL, Lee, JA, Thompson, L, Bielawski, JP and Chisholm, SW. 2006. Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol., 4: e234
52. Waterbury, JB and Valois, FW. 1993. Resistance to co-occurring phages enables marine Synechococcus communities to coexist with cyanophages abundant in seawater. Appl. Environ. Microbiol., 59: 3393-3399.
53. Fuller, NJ, Wilson, WH, Joint, IR and Mann, NH. 1998. Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR based detection and quantification techniques. Appl. Environ. Microbiol., 64: 2051-2060.
54. Matteson, AR, Loar, SN, Bourbonnière, RA and Wilhelm, SW. 2011. Molecular enumeration of an ecologically important cyanophage in a Lauretian great lake. Appl. Environ. Microbiol., 77: 6772-6779.
55. Roux, S, Enault, F, Robin, A, Ravet, V, Personnic, S, Theil, S, Colombet, J, Sime-Ngando, T and Debroas, D. 2012. Assessing the diversity and specificity of two freshwater viral communities through metagenomics. PLOS ONE, 7: e33641