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Volumn 2, Issue 1, 2014, Pages

Captivity results in disparate loss of gut microbial diversity in closely related hosts

Author keywords

Captive breeding; Captivity; Dietary specialization; Host microbe interactions; Microbial diversity; Neotoma

Indexed keywords


EID: 84983540206     PISSN: None     EISSN: 20511434     Source Type: Journal    
DOI: 10.1093/conphys/cou009     Document Type: Article
Times cited : (129)

References (45)
  • 1
    • 79958728657 scopus 로고    scopus 로고
    • Development of husbandry practices for the captive breeding of Key Largo woodrats (Neotoma floridana smalli)
    • Alligood CA, Daneault AJ, Carlson RC, Dillenbeck T, Wheaton CJ, Savage A (2011) Development of husbandry practices for the captive breeding of Key Largo woodrats (Neotoma floridana smalli). Zoo Biol 30: 318-327.
    • (2011) Zoo Biol , vol.30 , pp. 318-327
    • Alligood, C.A.1    Daneault, A.J.2    Carlson, R.C.3    Dillenbeck, T.4    Wheaton, C.J.5    Savage, A.6
  • 2
    • 84926213553 scopus 로고    scopus 로고
    • Co-evolution in context: the importance of studying gut microbiomes in wild animals
    • Amato KR (2013) Co-evolution in context: the importance of studying gut microbiomes in wild animals. Microbiome Science and Medicine 1: 10-29.
    • (2013) Microbiome Science and Medicine , vol.1 , pp. 10-29
    • Amato, K.R.1
  • 3
    • 76149132186 scopus 로고    scopus 로고
    • A molecular examination of relatedness, multiple paternity, and cohabitation of the Southern plains woodrat (Neotoma micropus)
    • Baxter BD, Mendez-Harclerode FM, Fulhorst CF, Bradley RD (2009) A molecular examination of relatedness, multiple paternity, and cohabitation of the Southern plains woodrat (Neotoma micropus). J Mammal 90: 819-831.
    • (2009) J Mammal , vol.90 , pp. 819-831
    • Baxter, B.D.1    Mendez-Harclerode, F.M.2    Fulhorst, C.F.3    Bradley, R.D.4
  • 5
    • 70449703996 scopus 로고    scopus 로고
    • What are the consequences of the disappearing human microbiota?
    • Blaser MJ, Falkow S (2009) What are the consequences of the disappearing human microbiota? Nat Rev Microbiol 7: 887-894.
    • (2009) Nat Rev Microbiol , vol.7 , pp. 887-894
    • Blaser, M.J.1    Falkow, S.2
  • 10
    • 0034043320 scopus 로고    scopus 로고
    • Diet breadth of mammalian herbivores: nutrient versus detoxification constraints
    • Dearing MD, Mangione AM, Karasov WH (2000) Diet breadth of mammalian herbivores: nutrient versus detoxification constraints. Oecologia 123: 397-405.
    • (2000) Oecologia , vol.123 , pp. 397-405
    • Dearing, M.D.1    Mangione, A.M.2    Karasov, W.H.3
  • 12
    • 0024183099 scopus 로고
    • Three sympatric species of Neotoma: dietary specialization and coexistence
    • Dial KP (1988) Three sympatric species of Neotoma: dietary specialization and coexistence. Oecologia 76: 531-537.
    • (1988) Oecologia , vol.76 , pp. 531-537
    • Dial, K.P.1
  • 14
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 15
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61: 1-10.
    • (1992) Biol Conserv , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 16
    • 0001151773 scopus 로고
    • Strategies in herbivory by mammals: the role of plant secondary compounds
    • Freeland WJ, Janzen DH (1974) Strategies in herbivory by mammals: the role of plant secondary compounds. Am Nat 108: 269-287.
    • (1974) Am Nat , vol.108 , pp. 269-287
    • Freeland, W.J.1    Janzen, D.H.2
  • 17
    • 84883186674 scopus 로고    scopus 로고
    • Mom knows best: the universality of maternal microbial transmission
    • Funkhouser LJ, Bordenstein SR (2013) Mom knows best: the universality of maternal microbial transmission. PLoS Biol 11: e1001631.
    • (2013) PLoS Biol , vol.11
    • Funkhouser, L.J.1    Bordenstein, S.R.2
  • 18
    • 73449128271 scopus 로고    scopus 로고
    • Fast UniFrac: facilitating highthroughput phylogenetic analysis of microbial communities including analysis of pyrosequencing and phylochip data
    • Hamady M, Lozupone C, Knight R (2010) Fast UniFrac: facilitating highthroughput phylogenetic analysis of microbial communities including analysis of pyrosequencing and phylochip data. ISME J 4: 17-27.
    • (2010) ISME J , vol.4 , pp. 17-27
    • Hamady, M.1    Lozupone, C.2    Knight, R.3
  • 21
    • 84931749060 scopus 로고    scopus 로고
    • Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores
    • Kohl KD, Dearing MD (2012) Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores. Ecol Lett 15: 1008-1015.
    • (2012) Ecol Lett , vol.15 , pp. 1008-1015
    • Kohl, K.D.1    Dearing, M.D.2
  • 22
    • 84897617116 scopus 로고    scopus 로고
    • Wild-caught rodents retain a majority of their natural gut microbiota upon entrance into captivity
    • Kohl KD, Dearing MD (2014) Wild-caught rodents retain a majority of their natural gut microbiota upon entrance into captivity. Environ Microbiol Rep 6: 191-195.
    • (2014) Environ Microbiol Rep , vol.6 , pp. 191-195
    • Kohl, K.D.1    Dearing, M.D.2
  • 25
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 28
    • 78149362060 scopus 로고    scopus 로고
    • Species differences in responses to captivity: stress, welfare, and the comparative method
    • Mason GJ (2010) Species differences in responses to captivity: stress, welfare, and the comparative method. Trends Ecol Evol 25: 713-721.
    • (2010) Trends Ecol Evol , vol.25 , pp. 713-721
    • Mason, G.J.1
  • 31
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: computing large minimum-evolution trees with profiles instead of a distance matrix
    • Price MN, Dehal PS, Arkin AP (2009) FastTree: computing large minimum-evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26: 1641-1650.
    • (2009) Mol Biol Evol , vol.26 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 34
    • 76149098217 scopus 로고    scopus 로고
    • Revisiting the dietary niche: when is a mammalian herbivore a specialist?
    • Shipley LA, Forbey JS, Moore BD (2009) Revisiting the dietary niche: when is a mammalian herbivore a specialist? Integr Comp Biol 49: 274-290.
    • (2009) Integr Comp Biol , vol.49 , pp. 274-290
    • Shipley, L.A.1    Forbey, J.S.2    Moore, B.D.3
  • 35
    • 33847359158 scopus 로고    scopus 로고
    • Differential hepatic gene expression of a dietary specialist (Neotoma stephensi) and generalist (Neotoma albigula) in response to juniper (Juniperus monosperma) ingestion
    • Skopec MM, Haley S, Dearing MD (2007) Differential hepatic gene expression of a dietary specialist (Neotoma stephensi) and generalist (Neotoma albigula) in response to juniper (Juniperus monosperma) ingestion. Comp Biochem Physiol Part D Genomics Proteomics 2: 34-43.
    • (2007) Comp Biochem Physiol Part D Genomics Proteomics , vol.2 , pp. 34-43
    • Skopec, M.M.1    Haley, S.2    Dearing, M.D.3
  • 36
    • 0003864622 scopus 로고    scopus 로고
    • Comparative Physiology of the Vertebrate Digestive System
    • Cambridge University Press, Cambridge.
    • Stevens CE, Hume ID (2004) Comparative Physiology of the Vertebrate Digestive System. Cambridge University Press, Cambridge.
    • (2004)
    • Stevens, C.E.1    Hume, I.D.2
  • 38
    • 77950669604 scopus 로고    scopus 로고
    • The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
    • Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI (2009b) The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 11: 6ra14.
    • (2009) Sci Transl Med , vol.11 , pp. 6ra14
    • Turnbaugh, P.J.1    Ridaura, V.K.2    Faith, J.J.3    Rey, F.E.4    Knight, R.5    Gordon, J.I.6
  • 39
    • 0020415992 scopus 로고
    • Stephen's woodrat, a dietary specialist
    • Vaughn TA (1982) Stephen's woodrat, a dietary specialist. J Mammal 63: 53-62.
    • (1982) J Mammal , vol.63 , pp. 53-62
    • Vaughn, T.A.1
  • 40
    • 0008213503 scopus 로고
    • Reproduction in Stephens' woodrat: the wages of folivory
    • Vaughn TA, Czaplewski NJ (1985) Reproduction in Stephens' woodrat: the wages of folivory. J Mammal 66: 429-443.
    • (1985) J Mammal , vol.66 , pp. 429-443
    • Vaughn, T.A.1    Czaplewski, N.J.2
  • 41
    • 0027805367 scopus 로고
    • Dietary and digestive constraints on basal energy metabolism in a small herbivorous rodent
    • Veloso C, Bozinovic F (1993) Dietary and digestive constraints on basal energy metabolism in a small herbivorous rodent. Ecology 74: 2003-2010.
    • (1993) Ecology , vol.74 , pp. 2003-2010
    • Veloso, C.1    Bozinovic, F.2
  • 42
    • 33744549296 scopus 로고    scopus 로고
    • Endosulfan degradation by a Rhodococcus strain isolated from earthworm gut
    • Verma K, Agrawal N, Farooq M, Misra RB, Hans RK (2006) Endosulfan degradation by a Rhodococcus strain isolated from earthworm gut. Ecotox Environ Safe 64: 377-381.
    • (2006) Ecotox Environ Safe , vol.64 , pp. 377-381
    • Verma, K.1    Agrawal, N.2    Farooq, M.3    Misra, R.B.4    Hans, R.K.5
  • 43
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedja JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedja, J.M.3    Cole, J.R.4
  • 45
    • 80055100230 scopus 로고    scopus 로고
    • Evidence of cellulose metabolism by the giant panda gut microbiome
    • Zhu L, Wu Q, Dai J, Zhang S, Wei F (2011) Evidence of cellulose metabolism by the giant panda gut microbiome. Proc Natl Acad Sci USA 43: 17714-17719.
    • (2011) Proc Natl Acad Sci USA , vol.43 , pp. 17714-17719
    • Zhu, L.1    Wu, Q.2    Dai, J.3    Zhang, S.4    Wei, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.