Efficiency of pyramiding of three quantitative resistance loci to apple scab

Plant Pathology

Volumn 66, Issue 3, 2017, Pages 412-422

  Laloi, G ^a   Vergne, E ^a   Durel, C E ^a   Le Cam, B ^a   Caffier, V ^a  

^a UNIVERSITÉ D'ANGERS   (France)

Author keywords

durability; hypersensitive reaction; partial resistance; Venturia inaequalis

Indexed keywords

ASEXUAL REPRODUCTION; COLONIZATION; CULTIVAR; DISEASE RESISTANCE; EFFICIENCY MEASUREMENT; FRUIT; FUNGAL DISEASE; GENE EXPRESSION; GENETIC ANALYSIS; PATHOGEN;

MALUS X DOMESTICA; VENTURIA INAEQUALIS;

EID: 84982958012     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/ppa.12581     Document Type: Article

References (40)

1. Andrivon D, Pilet F, Montarry J et al., 2007. Adaptation of Phytophthora infestans to partial resistance in potato: evidence from French and Moroccan populations. Phytopathology 97, 338–43.
2. Azzimonti G, Marcel TC, Robert O, Paillard S, Lannou C, Goyeau H, 2014. Diversity, specificity and impacts on field epidemics of QTLs involved in components of quantitative resistance in the wheat leaf rust pathosystem. Molecular Breeding 34, 549–67.
3. den Boer E, Pelgrom KTB, Zhang NWW, Visser RGF, Niks RE, Jeuken MJW, 2014. Effects of stacked quantitative resistances to downy mildew in lettuce do not simply add up. Theoretical and Applied Genetics 127, 1805–16.
4. Bourget R, Chaumont L, Durel CE, Sapoukhina N, 2015. Sustainable deployment of QTLs conferring quantitative resistance to crops: first lessons from a stochastic model. New Phytologist 206, 1163–71.
5. Boyd LA, Ridout C, O'Sullivan DM, Leach JE, Leung H, 2013. Plant–pathogen interactions: disease resistance in modern agriculture. Trends in Genetics 29, 233–40.
6. Bus VGM, Bassett HCM, Bowatte D et al., 2010. Genome mapping of an apple scab, a powdery mildew and a woolly apple aphid resistance gene from open-pollinated Mildew Immune Selection. Tree Genetics & Genomes 6, 477–87.
7. Bus VGM, Rikkerink EHA, Caffier V, Durel CE, Plummer KM, 2011. Revision of the nomenclature of the differential host–pathogen interactions of Venturia inaequalis and Malus. Annual Review of Phytopathology 49, 391–413.
8. Caffier V, Didelot F, Pumo B, Causeur D, Durel CE, Parisi L, 2010. Aggressiveness of eight Venturia inaequalis isolates virulent or avirulent to the major resistance gene Rvi6 on a non-Rvi6 apple cultivar. Plant Pathology 59, 1072–80.
9. Caffier V, Lasserre-Zuber P, Giraud M et al., 2014. Erosion of quantitative host resistance in the apple–Venturia inaequalis pathosystem. Infection, Genetics and Evolution 27, 481–9.
10. Caffier V, Le Cam B, Al Rifaï M et al., 2016. Slow erosion of a quantitative apple resistance to Venturia inaequalis based on an isolate-specific quantitative trait locus. Infection, Genetics and Evolution. doi:10.1016/j.meegid.2016.07.016.
11. Calenge F, Faure A, Goerre M et al., 2004. Quantitative trait loci (QTL) analysis reveals both broad-spectrum and isolate-specific QTL for scab resistance in an apple progeny challenged with eight isolates of Venturia inaequalis. Phytopathology 94, 370–9.
12. Castro AJ, Chen XM, Hayes PM, Johnston M, 2003. Pyramiding quantitative trait locus (QTL) alleles determining resistance to barley stripe rust: effects on resistance at the seedling stage. Crop Science 43, 651–9.
13. Chevalier M, Lespinasse Y, Renaudin S, 1991. A microscopic study of the different classes of symptoms coded by the Vf gene in apple for resistance to scab (Venturia inaequalis). Plant Pathology 40, 249–56.
14. Chung CL, Longfellow JM, Walsh EK et al., 2010. Resistance loci affecting distinct stages of fungal pathogenesis: use of introgression lines for QTL mapping and characterization in the maize–Setosphaeria turcica pathosystem. BMC Plant Biology 10, 103.
15. Clark MD, Bus VGM, Luby JJ, Bradeen JM, 2014. Characterization of the defence response to Venturia inaequalis in ‘Honeycrisp’ apple, its ancestors, and progeny. European Journal of Plant Pathology 140, 69–81.
16. Delmotte F, Mestre P, Schneider C et al., 2014. Rapid and multiregional adaptation to host partial resistance in a plant pathogenic oomycete: evidence from European populations of Plasmopara viticola, the causal agent of grapevine downy mildew. Infection, Genetics and Evolution 27, 500–8.
17. Durel CE, Parisi L, Laurens F, Van De Weg WE, Liebhard R, Jourjon MF, 2003. Genetic dissection of partial resistance to race 6 of Venturia inaequalis in apple. Genome 46, 224–34.
18. Durel CE, Calenge F, Parisi L et al., 2004. An overview of the position and robustness of scab resistance QTLs and major genes by aligning genetic maps of five apple progenies. Acta Horticulturae 663, 135–40.
19. Fournet S, Kerlan MC, Renault L, Dantec JP, Rouaux C, Montarry J, 2013. Selection of nematodes by resistant plants has implications for local adaptation and cross-virulence. Plant Pathology 62, 184–93.
20. Fukuoka S, Saka N, Mizukami Y et al., 2015. Gene pyramiding enhances durable blast disease resistance in rice. Scientific Reports 5, 7773.
21. Giraudoux P, 2014. pgirmess: Data analysis in ecology. R package version 1.5.9. [http://CRAN.R-project.org/package=pgirmess]. Accessed 6 July 2016.
22. Grimmer MK, Boyd LA, Clarke SM, Paveley ND, 2015. Pyramiding of partial disease resistance genes has a predictable, but diminishing, benefit to efficacy. Plant Pathology 64, 748–53.
23. Hammond-Kosack KE, Jones JD, 1996. Resistance gene-dependent plant defense responses. The Plant Cell 8, 1773–91.
24. Hasegawa M, Mitsuhara I, Seo S et al., 2014. Analysis on blast fungus-responsive characters of a flavonoid phytoalexin sakuranetin; accumulation in infected rice leaves, antifungal activity and detoxification by fungus. Molecules 19, 11404–18.
25. Hervé M, 2015. RVAideMemoire: Diverse basic statistical and graphical functions. R package version 0.9, 45-2. [http://CRAN.R-project.org/package=RVAideMemoire]. Accessed 6 July 2016.
26. Johnson R, 1981. Durable resistance: definition of, genetic control, and attainment in plant breeding. Phytopathology 71, 567.
27. Jones JDG, Dangl JL, 2006. The plant immune system. Nature 444, 323–9.
28. Lê Van A, Caffier V, Lasserre-Zuber P et al., 2013. Differential selection pressures exerted by host resistance quantitative trait loci on a pathogen population: a case study in an apple × Venturia inaequalis pathosystem. New Phytologist 197, 899–908.
29. Liebhard R, Kellerhals M, Pfammatter W, Jertmini M, Gessler C, 2003. Mapping quantitative physiological traits in apple (Malus × domestica Borkh.). Plant Molecular Biology 52, 511–26.
30. Malnoy M, Xu M, Borejsza-Wysocka E, Korban SS, Aldwinckle HS, 2008. Two receptor-like genes, Vfa1 and Vfa2, confer resistance to the fungal pathogen Venturia inaequalis inciting apple scab disease. Molecular Plant–Microbe Interactions 21, 448–58.
31. Mundt CC, 2014. Durable resistance: a key to sustainable management of pathogens and pests. Infection, Genetics and Evolution 27, 446–55.
32. Percival GC, Boyle S, 2005. Evaluation of microcapsule trunk injections for the control of apple scab and powdery mildew. Annals of Applied Biology 147, 119–27.
33. Poland JA, Balint-Kurti PJ, Wisser RJ, Pratt RC, Nelson RJ, 2009. Shades of gray: the world of quantitative disease resistance. Trends in Plant Science 14, 21–9.
34. Pontier D, Tronchet M, Rogowsky P, Lam E, Roby D, 1998. Activation of hsr203, a plant gene expressed during incompatible plant–pathogen interactions, is correlated with programmed cell death. Molecular Plant–Microbe Interactions 11, 544–54.
35. Quenouille J, Paulhiac E, Moury B, Palloix A, 2014. Quantitative trait loci from the host genetic background modulate the durability of a resistance gene: a rational basis for sustainable resistance breeding in plants. Heredity 112, 579–87.
36. R Core Team, 2014. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. [http://www.R-project.org]. Accessed 6 July 2016.
37. Schulze K, Schreiber L, Szankowski I, 2005. Inhibiting effects of resveratrol and its glucoside piceid against Venturia inaequalis, the causal agent of apple scab. Journal of Agricultural and Food Chemistry 53, 356–62.
38. Schwander F, Eibach R, Fechter I, Hausmann L, Zyprian E, Topfer R, 2012. Rpv10: a new locus from the Asian Vitis gene pool for pyramiding downy mildew resistance loci in grapevine. Theoretical and Applied Genetics 124, 163–76.
39. Silfverberg-Dilworth E, Matasci CL, Van De Weg WE et al., 2006. Microsatellite markers spanning the apple (Malus × domestica Borkh.) genome. Tree Genetics & Genomes 2, 202–24.
40. Vazquez MD, Zemetra R, Peterson CJ, Chen XMM, Heesacker A, Mundt CC, 2015. Multi-location wheat stripe rust QTL analysis: genetic background and epistatic interactions. Theoretical and Applied Genetics 128, 1307–18.