메뉴 건너뛰기




Volumn 43, Issue W1, 2015, Pages W343-W348

RBO Aleph: Leveraging novel information sources for protein structure prediction

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84979849758     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv357     Document Type: Article
Times cited : (17)

References (25)
  • 2
    • 84864828679 scopus 로고    scopus 로고
    • Galaxy TBM: Template-based modeling by building a reliable core and refining unreliable local regions
    • Ko, J., Park, H. and Seok, C. (2012) Galaxy TBM: template-based modeling by building a reliable core and refining unreliable local regions. BMC Bioinformatics, 13, 198-205.
    • (2012) BMC Bioinformatics , vol.13 , pp. 198-205
    • Ko, J.1    Park, H.2    Seok, C.3
  • 3
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • Söding, J., Biegert, A. and Lupas, A.N. (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res., 33, W244-W248.
    • (2005) Nucleic Acids Res. , vol.33 , pp. W244-W248
    • Söding, J.1    Biegert, A.2    Lupas, A.N.3
  • 4
    • 34250851687 scopus 로고    scopus 로고
    • LOMETS: A local meta-threading-server for protein structure prediction
    • Wu, S. and Zhang, Y. (2007) LOMETS: a local meta-threading-server for protein structure prediction. Nucleic Acids Res., 35, 3375-3382.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3375-3382
    • Wu, S.1    Zhang, Y.2
  • 5
    • 79960394811 scopus 로고    scopus 로고
    • Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates
    • Yang, Y., Faraggi, E., Zhao, H. and Zhou, Y. (2011) Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates. Bioinformatics, 27, 2076-2082.
    • (2011) Bioinformatics , vol.27 , pp. 2076-2082
    • Yang, Y.1    Faraggi, E.2    Zhao, H.3    Zhou, Y.4
  • 6
    • 77951941264 scopus 로고    scopus 로고
    • MULTICOM: A multi-level combination approach to protein structure prediction and its assessments in CASP8
    • Wang, Z., Eickholt, J. and Cheng, J. (2010) MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26, 882-888.
    • (2010) Bioinformatics , vol.26 , pp. 882-888
    • Wang, Z.1    Eickholt, J.2    Cheng, J.3
  • 7
    • 84908542331 scopus 로고    scopus 로고
    • Combining physicochemical and evolutionary information for protein contact prediction
    • Schneider, M. and Brock, O. (2014) Combining physicochemical and evolutionary information for protein contact prediction. PLoS One, 9, e108438.
    • (2014) PLoS One , vol.9 , pp. e108438
    • Schneider, M.1    Brock, O.2
  • 8
    • 58149277688 scopus 로고    scopus 로고
    • Guiding conformation space search with an all-atom energy potential
    • Brunette, T. and Brock, O. (2008) Guiding conformation space search with an all-atom energy potential. Proteins, 73, 958-972.
    • (2008) Proteins , vol.73 , pp. 958-972
    • Brunette, T.1    Brock, O.2
  • 9
    • 84883481556 scopus 로고    scopus 로고
    • The protein model portal - A comprehensive resource for protein structure and model information
    • Haas, J., Roth, S., Arnold, K., Kiefer, F., Schmidt, T., Bordoli, L. and Schwede, T. (2013) The protein model portal - a comprehensive resource for protein structure and model information. Database, 2013, doi:10.1093/database/bat031.
    • (2013) Database , pp. 2013
    • Haas, J.1    Roth, S.2    Arnold, K.3    Kiefer, F.4    Schmidt, T.5    Bordoli, L.6    Schwede, T.7
  • 10
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • Söding, J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics, 21, 951-960.
    • (2005) Bioinformatics , vol.21 , pp. 951-960
    • Söding, J.1
  • 11
    • 80855147852 scopus 로고    scopus 로고
    • RaptorX: Exploiting structure information for protein alignment by statistical inference
    • Peng, J. and Xu, J. (2011) RaptorX: exploiting structure information for protein alignment by statistical inference. Proteins, 79, 161-171.
    • (2011) Proteins , vol.79 , pp. 161-171
    • Peng, J.1    Xu, J.2
  • 13
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman, L. (2001) Random forests. Mach. Learn., 45, 5-32.
    • (2001) Mach. Learn. , vol.45 , pp. 5-32
    • Breiman, L.1
  • 14
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 16
    • 0027490731 scopus 로고
    • Recognition of errors in three-dimensional structures of proteins
    • Sippl, M.J. (1993) Recognition of errors in three-dimensional structures of proteins. Proteins, 17, 355-362.
    • (1993) Proteins , vol.17 , pp. 355-362
    • Sippl, M.J.1
  • 17
    • 39149099199 scopus 로고    scopus 로고
    • The mod FOLD server for the quality assessment of protein structural models
    • McGuffin, L.J. (2008) The Mod FOLD server for the quality assessment of protein structural models. Bioinformatics, 24, 586-587.
    • (2008) Bioinformatics , vol.24 , pp. 586-587
    • McGuffin, L.J.1
  • 18
    • 17844363963 scopus 로고    scopus 로고
    • PPRODO: Prediction of protein domain boundaries using neural networks
    • Sim, J., Kim, S.-Y. and Lee, J. (2005) PPRODO: prediction of protein domain boundaries using neural networks. Proteins, 59, 627-632.
    • (2005) Proteins , vol.59 , pp. 627-632
    • Sim, J.1    Kim, S.-Y.2    Lee, J.3
  • 19
    • 33745101459 scopus 로고    scopus 로고
    • DOMpro: Protein domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks
    • Cheng, J., Sweredoski, M.J. and Baldi, P. (2006) DOMpro: protein domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks. Data Min. Knowl. Discov., 13, 1-10.
    • (2006) Data Min. Knowl. Discov. , vol.13 , pp. 1-10
    • Cheng, J.1    Sweredoski, M.J.2    Baldi, P.3
  • 20
    • 33846471085 scopus 로고    scopus 로고
    • Prediction of structures of multidomain proteins from structures of the individual domains
    • Wollacott, A.M., Zanghellini, A., Murphy, P. and Baker, D. (2007) Prediction of structures of multidomain proteins from structures of the individual domains. Protein Sci., 16, 165-175.
    • (2007) Protein Sci. , vol.16 , pp. 165-175
    • Wollacott, A.M.1    Zanghellini, A.2    Murphy, P.3    Baker, D.4
  • 24
    • 84898619057 scopus 로고    scopus 로고
    • De novo structure prediction of globular proteins aided by sequence variation-derived contacts
    • Kosciolek, T. and Jones, D.T. (2014) De novo structure prediction of globular proteins aided by sequence variation-derived contacts. PLoS One, 9, e92197.
    • (2014) PLoS One , vol.9 , pp. e92197
    • Kosciolek, T.1    Jones, D.T.2
  • 25
    • 84876239078 scopus 로고    scopus 로고
    • JSmol and the next-generation web-based representation of 3d molecular structure as applied to proteopedia
    • Hanson, R.M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J.L. (2013) JSmol and the next-generation web-based representation of 3d molecular structure as applied to proteopedia. Isr. J. Chem., 53, 207-216.
    • (2013) Isr. J. Chem. , vol.53 , pp. 207-216
    • Hanson, R.M.1    Prilusky, J.2    Renjian, Z.3    Nakane, T.4    Sussman, J.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.