Single and multiple resistance QTL delay symptom appearance and slow down root colonization by Aphanomyces euteiches in pea near isogenic lines

BMC Plant Biology

Volumn 16, Issue 1, 2016, Pages

  Lavaud, C ^a,b   Baviere, M ^a   Le Roy, G ^a,b   Herve M R ^a   Moussart, A ^b,c   Delourme, R ^a   Pilet Nayel, M L ^a,b  

^a Universite Rennes 1   (France)

^b CEMAGREF   (France)

^c Terres Inovia   (France)

Author keywords

Near Isogenic Lines (NILs); Partial resistance; Pisum sativum; Q PCR; Quantitative Trait Loci (QTL); Root colonization speed; Root rot; Symptom appearance

Indexed keywords

ALLELE; APHANOMYCES; GENETICS; MICROBIOLOGY; PEA; PLANT ROOT; QUANTITATIVE TRAIT LOCUS;

ALLELES; APHANOMYCES; PEAS; PLANT ROOTS; QUANTITATIVE TRAIT LOCI;

EID: 84979500865     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/s12870-016-0822-4     Document Type: Article

References (57)

1. Fukuoka S, Saka N, Mizukami Y, Koga H, Yamanouchi U, Yoshioka Y, Hayashi N, Ebana K, Mizobuchi R, Yano M. Gene pyramiding enhances durable blast disease resistance in rice. Sci Rep. 2015;5:7773.
2. Poland JA, Balint-Kurti PJ, Wisser RJ, Pratt RC, Nelson RJ. Shades of gray: the world of quantitative disease resistance. Trends Plant Sci. 2009;14(1):21-9.
3. Niks RE, Qi X, Marcel TC. Quantitative Resistance to Biotrophic Filamentous Plant Pathogens: Concepts, Misconceptions, and Mechanisms. Annu Rev Phytopathol. 2015;53:445-70.
4. Cook DE, Lee TG, Guo XL, Melito S, Wang K, Bayless AM, Wang JP, Hughes TJ, Willis DK, Clemente TE, et al. Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean. Science. 2012;338(6111):1206-9.
5. Azzimonti G, Marcel TC, Robert O, Paillard S, Lannou C, Goyeau H. Diversity, specificity and impacts on field epidemics of QTLs involved in components of quantitative resistance in the wheat leaf rust pathosystem. Mol Breed. 2014;34(2):549-67.
6. Wang LJ, Wang YJ, Wang Z, Marcel TC, Niks RE, Qi XQ. The phenotypic expression of QTLs for partial resistance to barley leaf rust during plant development. Theor Appl Genet. 2010;121(5):857-64.
7. Chung CL, Longfellow JM, Walsh EK, Kerdieh Z, Van Esbroeck G, Balint-Kurti P, Nelson RJ. Resistance loci affecting distinct stages of fungal pathogenesis: use of introgression lines for QTL mapping and characterization in the maize - Setosphaeria turcica pathosystem. BMC Plant Biol. 2010;10:103.
8. Talukder ZI, Tharreau D, Price AH. Quantitative trait loci analysis suggests that partial resistance to rice blast is mostly determined by race-specific interactions. New Phytol. 2004;162(1):197-209.
9. Marcel TC, Gorguet B, Ta MT, Kohutova Z, Vels A, Niks RE. Isolate specificity of quantitative trait loci for partial resistance of barley to Puccinia hordei confirmed in mapping populations and near-isogenic lines. New Phytol. 2008;177(3):743-55.
10. Calenge F, Faure A, Goerre M, Gebhardt C, Van de Weg WE, Parisi L, Durel CE. Quantitative trait loci (QTL) analysis reveals both broad-spectrum and isolate-specific QTL for scab resistance in an apple progeny challenged with eight isolates of Venturia inaequalis. Phytopathology. 2004;94(4):370-9.
11. Richardson KL, Vales MI, Kling JG, Mundt CC, Hayes PM. Pyramiding and dissecting disease resistance QTL to barley stripe rust. Theor Appl Genet. 2006;113(3):485-95.
12. Jones FR, Drechsler C. Root rot of peas in the United States caused by Aphanomyces euteiches. J Agric Res. 1925;30:293-325.
13. Moussart A, Even MN, Tivoli B. Reaction of genotypes from several species of grain and forage legumes to infection with a French pea isolate of the oomycete Aphanomyces euteiches. Eur J Plant Pathol. 2008;122(3):321-33.
14. Wicker E, Rouxel F. Specific behaviour of French Aphanomyces euteiches Drechs. Populations for virulence and aggressiveness on pea, related to isolates from Europe, America and New Zealand. Eur J Plant Pathol. 2001;107(9):919-29.
15. Papavizas GC, Ayers WA. Aphanomyces species and their root diseases in pea and sugarbeet. A review. US Dep Agric Tech Bull. 1974;1485:158.
16. Hughes TJ, Grau CR. Aphanomyces root rot or common root rot of legumes. Plant Health Instructor. 2007. doi: 10.1094/PHI-I-2007-0418-01.
17. Moussart A, Lemarchand E, Tivoli B: Description, validation and possible uses of a soil infectivity test for soils infested by Aphanomyces euteiches. In: 8ème Conference Internationale sur les Maladies des Plantes; Tours, France: Edited by AFPP. 5-6 Decembre 2006.
18. Pilet-Nayel ML, Coyne C, Hamon C, Lesne A, Le Goff I, Esnault R, Lecointe R, Roux-Duparque M, Mangin P, McPhee K, et al. Understanding genetics of partial resistance to Aphanomyces root rot in pea for new breeding prospects. In: International Workshop on Aphanomyces in Legumes: 07-09 November 2007; Rennes, France: Edited by 3d P. 2007:34-39.
19. Hamon C, Coyne CJ, McGee RJ, Lesne A, Esnault R, Mangin P, Herve M, Le Goff I, Deniot G, Roux-Duparque M, et al. QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea. BMC Plant Biol. 2013;13:45.
20. Desgroux A, L'Anthoëne V, Roux-Duparque M, Rivière JP, Aubert G, Tayeh N, Moussart A, Mangin P, Vetel P, Piriou C, et al. Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea. BMC Genomics. 2016;17(1):1-21.
21. Hamon C, Baranger A, Coyne CJ, McGee RJ, Le Goff I, L'Anthoene V, Esnault R, Riviere JP, Klein A, Mangin P, et al. New consistent QTL in pea associated with partial resistance to Aphanomyces euteiches in multiple French and American environments. Theor Appl Genet. 2011;123(2):261-81.
22. Hamon C, Baranger A, Miteul H, Lecointe R, Le Goff I, Deniot G, Onfroy C, Moussart A, Prosperi JM, Tivoli B, et al. A complex genetic network involving a broad-spectrum locus and strain-specific loci controls resistance to different pathotypes of Aphanomyces euteiches in Medicago truncatula. Theor Appl Genet. 2010;120(5):955-70.
23. Pilet-Nayel ML, Muehlbauer FJ, McGee RJ, Kraft JM, Baranger A, Coyne CJ. Quantitative trait loci for partial resistance to Aphanomyces root rot in pea. Theor Appl Genet. 2002;106(1):28-39.
24. Pilet-Nayel ML, Muehlbauer FJ, McGee RJ, Kraft JM, Baranger A, Coyne CJ. Consistent quantitative trait loci in pea for partial resistance to Aphanomyces euteiches isolates from the United States and France. Phytopathology. 2005;95(11):1287-93.
25. Lavaud C, Lesné A, Piriou C, Le Roy G, Boutet G, Moussart A, Poncet C, Delourme R, Baranger A, Pilet-Nayel ML. Validation of QTL for resistance to Aphanomyces euteiches in different pea genetic backgrounds using near-isogenic lines. Theor Appl Genet. 2015;128:2273-88.
26. Moussart A, Wicker E, Duparque M, Rouxel F: Development of an efficient screening test for pea resistance to Aphanomyces euteiches. In: 4th Eur Conf Grain Legumes; Cracow, Poland: Edited by AEP. July 8-12th 2001.
27. Kraft JM, Boge WL. Identification of characteristics associated with resistance to root rot caused by Aphanomyces euteiches in pea. Plant Dis. 1996;80(12):1383-6.
28. Kraft JM, Boge WL. Development of an antiserum to quantify Aphanomyces euteiches in resistant pea lines. Plant Dis. 1994;78(2):179-83.
29. Larsen J, Mansfeld-Giese K, Bodker L. Quantification of Aphanomyces euteiches in pea roots using specific fatty acids. Mycol Res. 2000;104:858-64.
30. Vandemark G, Grunwald NJ. Use of real-time PCR to examine the relationship between disease severity in pea and Aphanomyces euteiches DNA content in roots. Eur J Plant Pathol. 2005;111(4):309-16.
31. Vandemark GJ, Barker BM, Gritsenko MA. Quantifying Aphanomyces euteiches in alfalfa with a fluorescent polymerase chain reaction assay. Phytopathology. 2002;92(3):265-72.
32. Schena L, Nigro F, Ippolito A, Gallitelli D. Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi. Eur J Plant Pathol. 2004;110(9):893-908.
33. R Development Core Team: R: A language and environment for statistical computing. In. Vienna, Austria. Retrieved from http://www.R-project.org: R Foundation for Statistical Computing; 2014.
34. Shaner G, Finney RE. Effect of nitrogen-fertilization on expression of slow-mildewing resistance in knox wheat. Phytopathology. 1977;67(8):1051-6.
35. Christensen RHB: ordinal---Regression Models for Ordinal Data. In. https://cran.r-project.org/web/packages/ordinal/index.html: R package version 2015.1-21; 2015.
36. Herve M: RVAideMemoire: Diverse Basic Statistical and Graphical Functions. In. https://cran.r-project.org/web/packages/RVAideMemoire/index.html: R package version 0.9-45-2; 2015.
37. Bates D, Maechler M, Bolker B, Walker S: lme4: Linear mixed-effects models using Eigen and S4. In. https://cran.r-project.org/web/packages/lme4/index.html: R package version 1.1-7; 2014.
38. Lenth RV, Herve M: lsmeans: Least-Squares Means. In. https://cran.r-project.org/web/packages/lsmeans/index.html: R package version 2.18; 2015.
39. Agresti A. Categorical Data Analysis, Second Edition. New York: Wiley; 2002. p. 372.
40. McCullagh P. Regression-models for ordinal data. J R Stat Soc Ser B-Methodol. 1980;42(2):109-42.
41. Schena L, Nicosia M, Sanzani SM, Faedda R, Ippolito A, Cacciola SO. Development of quantitative PCR detection methods for phytopathogenic fungi and oomycetes. J Plant Pathol. 2013;95(1):7-24.
42. Malvick DK, Percich JA, Pfleger FL, Givens J, Williams JL. Evaluation of methods for estimating inoculum potential of Aphanomyces euteiches in soil. Plant Dis. 1994;78(4):361-5.
43. Williams-Woodward JL, Pfleger FL, Allmaras RR, Fritz VA. Aphanomyces euteiches inoculum potential: A rolled-towel bioassay suitable for fine-textured soils. Plant Dis. 1998;82(4):386-90.
44. Djebali N, Jauneau A, Ameline-Torregrosa C, Chardon F, Jaulneau V, Mathe C, Bottin A, Cazaux M, Pilet-Nayel ML, Baranger A, et al. Partial Resistance of Medicago truncatula to Aphanomyces euteiches Is Associated with Protection of the Root Stele and Is Controlled by a Major QTL Rich in Proteasome-Related Genes. Mol Plant-Microbe Interact. 2009;22(9):1043-55.
45. Bonhomme M, Andre O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi JM, Briskine R, Mudge J, Debelle F, et al. High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches. New Phytol. 2014;201(4):1328-42.
46. Babu BK, Sharma R. TaqMan real-time PCR assay for the detection and quantification of Sclerospora graminicola, the causal agent of pearl millet downy mildew. Eur J Plant Pathol. 2015;142(1):149-58.
47. Li S, Hartman GL, Domier LL, Boykin D. Quantification of Fusarium solani f. sp. glycines isolates in soybean roots by colony-forming unit assays and real-time quantitative PCR. Theor Appl Genet. 2008;117(3):343-52.
48. Schoina C, Stringlis IA, Pantelides IS, Tjamos SE, Paplomatas EJ. Evaluation of application methods and biocontrol efficacy of Paenibacillus alvei strain K-165, against the cotton black root rot pathogen Thielaviopsis basicola. Biological Control. 2011;58(1):68-73.
49. Lopez-Llorca LV, Bordallo JJ, Salinas J, Monfort E, Lopez-Serna ML. Use of light and scanning electron microscopy to examine colonisation of barley rhizosphere by the nematophagous fungus Verticillium chlamydosporium. Micron. 2002;33(1):61-7.
50. Kjoller R, Rosendahl S. Enzymatic activity of the mycelium compared with oospore development during infection of pea roots by Aphanomyces euteiches. Phytopathology. 1998;88(9):992-6.
51. Hord MJ, Ristaino JB. Effects of physical and chemical factors on the germination of oospores of Phytophthora capsici invitro. Phytopathology. 1991;81(12):1541-6.
52. Campbell AM, Duncan JM, Malcolmson JF. Production of oospores invitro by self fertilization in single isolates of a1 mating types of Phytophthora infestans. Trans Br Mycol Soc. 1985;84:533-5.
53. Azzimonti G, Lannou C, Sache I, Goyeau H. Components of quantitative resistance to leaf rust in wheat cultivars: diversity, variability and specificity. Plant Pathol. 2013;62(5):970-81.
54. Pilet-Nayel ML, Hamon C, Moussart A, Roux-Duparque M, Onfroy C, Le May C, Tivoli B, Baranger A. Diversité et stabilité des facteurs génétiques de résistance aux principales maladies fongiques du pois protéagineux. In: Innovations Agronomiques. 2014;35:27-38.
55. Jorge V, Dowkiw A, Faivre-Rampant P, Bastien C. Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection. New Phytol. 2005;167(1):113-27.
56. Villareal L, Lannou C. Selection for increased spore efficacy by host genetic background in a wheat powdery mildew population. Phytopathology. 2000;90(12):1300-6.
57. Pariaud B, Ravigne V, Halkett F, Goyeau H, Carlier J, Lannou C. Aggressiveness and its role in the adaptation of plant pathogens. Plant Pathol. 2009;58(3):409-24.