Spike-dip transformation of Setaria viridis

Plant Journal

Volumn 86, Issue 1, 2016, Pages 89-101

  Saha, Prasenjit ^a   Blumwald, Eduardo ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Agrobacterium mediated spike dip; in planta; monocots; Setaria viridis; technical advance; transient and stable transformation

Indexed keywords

BACTERIA; FLUORESCENCE; FLUORESCENCE MICROSCOPY; GENE EXPRESSION; NUCLEIC ACIDS; PLANTS (BOTANY); PROTEINS; TISSUE CULTURE; VIRUSES;

AGROBACTERIUM MEDIATED; MONOCOTS; SETARIA VIRIDIS; STABLE TRANSFORMATION; TECHNICAL ADVANCES;

GENES;

ACETOPHENONE DERIVATIVE; ACETOSYRINGONE; ORGANOSILICON DERIVATIVE; SILWET L-77;

AGROBACTERIUM TUMEFACIENS; CYTOLOGY; GENETIC TRANSFORMATION; GENETICS; PLANT LEAF; PLANT SEED; PROMOTER REGION; REPORTER GENE; REPRODUCIBILITY; SEEDLING; SETARIA (PLANT); TRANSGENE; TRANSGENIC PLANT;

ACETOPHENONES; AGROBACTERIUM TUMEFACIENS; GENES, REPORTER; ORGANOSILICON COMPOUNDS; PLANT LEAVES; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS, GENETIC; REPRODUCIBILITY OF RESULTS; SEEDLINGS; SEEDS; SETARIA PLANT; TRANSFORMATION, GENETIC; TRANSGENES;

EID: 84979486390     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.13148     Document Type: Article

References (65)

1. Alves, S.C., Worland, B., Thole, V., Snape, J.W., Bevan, M.W., and, Vain, P., (2009) A protocol for Agrobacterium-mediated transformation of Brachypodium distachyon community standard line Bd21. Nat. Protoc. 4, 638-649.
2. Bastaki, N.K., and, Cullis, C.A., (2014) Floral-dip transformation of flax (Linum usitatissimum) to generate transgenic progenies with a high transformation rate. J. Vis. Exp. 94, 1-10.
3. Bechtold, N., and, Pelletier, G., (1998) In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. Methods Mol. Biol. 82, 259-266.
4. Bennetzen, J.L., Schmutz, J., Wang, H., et al. (2012) Reference genome sequence of the model plant Setaria. Nat. Biotechnol. 30, 555-561.
5. Bent, A.F., (2000) Arabidopsis in planta transformation. Uses, mechanisms, and prospects for transformation of other species. Plant Physiol. 124, 1540-1547.
6. Bent, A., (2006) Arabidopsis thaliana floral dip transformation method. Methods Mol. Biol. 343, 87-103.
7. Birch, R.G., (1997) PLANT TRANSFORMATION: problems and strategies for practical application. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 297-326.
8. Bradford, M.M., (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
9. Brutnell, T.P., Wang, L., Swartwood, K., Goldschmidt, A., Jackson, D., Zhu, X.G., Kellogg, E., and, Van Eck, J., (2010) Setaria viridis: a model for C4 photosynthesis. Plant Cell, 22, 2537-2544.
10. Brutnell, T.P., Bennetzen, J.L., and, Vogel, J.P., (2015) Brachypodium distachyon and Setaria viridis: model genetic systems for the grasses. Annu. Rev. Plant Biol. 66, 465-485.
11. Chen, X., Equi, R., Baxter, H., Berk, K., Han, J., Agarwal, S., and, Zale, J., (2010) A high-throughput transient gene expression system for switchgrass (Panicum virgatum L.) seedlings. Biotechnol. Biofuels, 3, 1-10.
12. Cheng, M., Lowe, B.A., Spencer, T.M., Ye, X., and, Armstrong, C.L., (2004) Factors influencing Agrobacterium-mediated transformation of monocotyledonous species. In Vitro Cell. Dev. Biol. Plant, 40, 31-45.
13. Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
14. Curtis, I., and, Nam, H., (2001) Transgenic radish (Raphanus sativus L. longipinnatus Bailey) by floral-dip method-plant development and surfactant are important in optimizing transformation efficiency. Transgenic Res. 10, 363-371.
15. Desfeux, C., Clough, S.J., and, Bent, A.F., (2000) Female reproductive tissues are the primary target of Agrobacterium-mediated transformation by the Arabidopsis floral-dip method. Plant Physiol. 123, 895-904.
16. Doyle, J.J., and, Doyle, J.L., (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11-15.
17. Dutta, I., Saha, P., Majumder, P., Sarkar, A., Chakraborti, D., Banerjee, S., and, Das, S., (2005) The efficacy of a novel insecticidal protein, Allium sativum leaf lectin (ASAL), against homopteran insects monitored in transgenic tobacco. Plant Biotechnol. J. 3, 601-611.
18. Gelvin, S.B., (2003) Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool. Microbiol. Mol. Biol. Rev. 67, 16-37.
19. Ghedira, R., De Buck, S., Nolf, J., and, Depicker, A., (2013) The efficiency of Arabidopsis thaliana floral dip transformation is determined not only by the Agrobacterium strain used but also by the physiology and the ecotype of the dipped plant. Mol. Plant Microbe Interact. 26, 823-832.
20. Hamilton, R.H., and, Fall, M.Z., (1971) The loss of tumor-initiating ability in Agrobacterium tumefaciens by incubation at high temperature. Experientia, 27, 229-230.
21. Hiei, Y., and, Komari, T., (2008) Agrobacterium-mediated transformation of rice using immature embryos or calli induced from mature seed. Nat. Protoc. 3, 824-834.
22. Hiei, Y., Ishida, Y., and, Komari, T., (2014) Progress of cereal transformation technology mediated by Agrobacterium tumefaciens. Front. Plant Sci. 5, 628.
23. Hoekema, A., Hirsch, P.R., Hooykaas, P.J.J., and, Schilperoort, R.A., (1983) A binary plant vector strategy based on separation of vir- and T-region of the Agrobacterium tumefaciens Ti-plasmid. Nature, 303, 179-180.
24. Hood, E., Gelvin, S., Melchers, L., and, Hoekema, A., (1993) New Agrobacterium helper plasmids for gene transfer to plants. Transgenic Res. 2, 208-218.
25. Huang, P., Feldman, M., Schroder, S., Bahri, B.A., Diao, X., Zhi, H., Estep, M., Baxter, I., Devos, K.M., and, Kellogg, E.A., (2014) Population genetics of Setaria viridis, a new model system. Mol. Ecol. 23, 4912-4925.
26. Jach, G., Binot, E., Frings, S., Luxa, K., and, Schell, J., (2001) Use of red fluorescent protein from Discosoma sp. (dsRED) as a reporter for plant gene expression. Plant J. 28, 483-491.
27. Jefferson, R.A., Kavanagh, T.A., and, Bevan, M.W., (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6, 3901-3907.
28. Jia, G., Shi, S., Wang, C., Niu, Z., Chai, Y., Zhi, H., and, Diao, X., (2013) Molecular diversity and population structure of Chinese green foxtail [Setaria viridis (L.) Beauv.] revealed by microsatellite analysis. J. Exp. Bot. 64, 3645-3656.
29. Jiang, H., Barbier, H., and, Brutnell, T., (2013) Methods for performing crosses in Setaria viridis, a new model system for the grasses. J. Vis. Exp. 80, 1-8.
30. John, C.R., Smith-Unna, R.D., Woodfield, H., Covshoff, S., and, Hibberd, J.M., (2014) Evolutionary convergence of cell-specific gene expression in independent lineages of C4 grasses. Plant Physiol. 165, 62-75.
31. Kim, M.J., Baek, K., and, Park, C.M., (2009) Optimization of conditions for transient Agrobacterium-mediated gene expression assays in Arabidopsis. Plant Cell Rep. 28, 1159-1167.
32. Koncz, C., and, Schell, J., (1986) The promoter of TL-DNA gene five controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector. Mol. Gen. Genet. 204, 383-396.
33. Lazo, G.R., Stein, P.A., and, Ludwig, R.A., (1991) A DNA transformation-competent Arabidopsis genomic library in Agrobacterium. Biotechnology, 9, 963-967.
34. Lee, M.W., and, Yang, Y., (2006) Transient expression assay by agroinfiltration of leaves. Methods Mol. Biol. 323, 225-229.
35. Li, P., and, Brutnell, T.P., (2011) Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses. J. Exp. Bot. 62, 3031-3037.
36. Lin, J.J., (1995) Electrotransformation of Agrobacterium. Methods Mol. Biol. 47, 171-178.
37. Liu, X., Brost, J., Hutcheon, C., et al. (2012) Transformation of the oilseed crop Camelina sativa by Agrobacterium-mediated floral dip and simple large-scale screening of transformants. In Vitro Cell. Dev. Biol. Plant, 48, 462-468.
38. Madhou, P., Raghavan, C., Wells, A., and, Stevenson, T.W., (2006) Genome-wide microarray analysis of the effect of a surfactant application in Arabidopsis. Weed Res. 46, 275-283.
39. Martins, P.K., Nakayama, T.J., Ribeiro, A.P., Cunha, B.A.D.B.d., Nepomuceno, A.L., Harmon, F.G., Kobayashi, A.K., and, Molinari, H.B.C., (2015) Setaria viridis floral-dip: a simple and rapid Agrobacterium-mediated transformation method. Biotechnol. Rep. 6, 61-63.
40. Mohanty, A., Sarma, N.P., and, Tyagi, A.K., (1999) Agrobacterium-mediated high frequency transformation of an elite indica rice variety Pusa Basmati 1 and transmission of the transgenes to R2 progeny. Plant Sci. 147, 127-137.
41. Mu, G., Chang, N., Xiang, K., Sheng, Y., Zhang, Z., and, Pan, G., (2012) Dip method mediated by Agrobacterium. Biotechnology, 11, 178-183.
42. Murashige, T., and, Skoog, F., (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol. Plant. 15, 473-497.
43. Petti, C., Shearer, A., Tateno, M., Ruwaya, M., Nokes, S., Brutnell, T., and, Debolt, S., (2013) Comparative feedstock analysis in Setaria viridis L. as a model for C4 bioenergy grasses and Panicoid crop species. Front. Plant Sci. 4, 181.
44. Saha, P., and, Blumwald, E., (2014) Assessing reference genes for accurate transcript normalization using quantitative real-time PCR in pearl millet [Pennisetum glaucum (L.) R. Br.]. PLoS ONE, 9, e106308.
45. Saha, P., Dasgupta, I., and, Das, S., (2006a) A novel approach for developing resistance in rice against phloem limited viruses by antagonizing the phloem feeding hemipteran vectors. Plant Mol. Biol. 62, 735-752.
46. Saha, P., Majumder, P., Dutta, I., Ray, T., Roy, S.C., and, Das, S., (2006b) Transgenic rice expressing Allium sativum leaf lectin with enhanced resistance against sap-sucking insect pests. Planta, 223, 1329-1343.
47. Saha, P., Chakraborti, D., Sarkar, A., Dutta, I., Basu, D., and, Das, S., (2007) Characterization of vascular-specific RSs1 and rolC promoters for their utilization in engineering plants to develop resistance against hemipteran insect pests. Planta, 226, 429-442.
48. Saha, P., Ray, T., Tang, Y., Dutta, I., Evangelous, N.R., Kieliszewski, M.J., Chen, Y., and, Cannon, M.C., (2013) Self-rescue of an EXTENSIN mutant reveals alternative gene expression programs and candidate proteins for new cell wall assembly in Arabidopsis. Plant J. 75, 104-116.
49. Sambrook, J., Fritsch, E.F., and, Maniatis, T., (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor laboratory Press.
50. Sebastian, J., Wong, M.K., Tang, E., and, Dinneny, J.R., (2014) Methods to promote germination of dormant Setaria viridis seeds. PLoS ONE, 9, e95109.
51. Sheen, J., Hwang, S., Niwa, Y., Kobayashi, H., and, Galbraith, D.W., (1995) Green-fluorescent protein as a new vital marker in plant cells. Plant J. 8, 777-784.
52. Shrawat, A.K., and, Lorz, H., (2006) Agrobacterium-mediated transformation of cereals: a promising approach crossing barriers. Plant Biotechnol. J. 4, 575-603.
53. Sood, P., Bhattacharya, A., and, Sood, A., (2011) Problems and possibilities of monocot transformation. Biol. Plant. 55, 1-15.
54. Toki, S., Takamatsu, S., Nojiri, C., Ooba, S., Anzai, H., Iwata, M., Christensen, A.H., Quail, P.H., and, Uchimiya, H., (1992) Expression of a maize ubiquitin gene promoter-bar chimeric gene in transgenic rice plants. Plant Physiol. 100, 1503-1507.
55. Trieu, A.T., Burleigh, S.H., Kardailsky, I.V., et al. (2000) Transformation of Medicago truncatula via infiltration of seedlings or flowering plants with Agrobacterium. Plant J. 22, 531-541.
56. Vervliet, G., Holsters, M., Teuchy, H., Van Montagu, M., and, Schell, J., (1975) Characterization of different plaque-forming and defective temperate phages in Agrobacterium. J. Gen. Virol. 26, 33-48.
57. Wang, Q.M., and, Wang, L., (2012) An evolutionary view of plant tissue culture: somaclonal variation and selection. Plant Cell Rep. 31, 1535-1547.
58. Whalen, M.C., Innes, R.W., Bent, A.F., and, Staskawicz, B.J., (1991) Identification of Pseudomonas syringae pathogens of Arabidopsis and a bacterial locus determining avirulence on both Arabidopsis and soybean. Plant Cell, 3, 49-59.
59. Wilmink, A., and, Dons, J.J.M., (1993) Selective agents and marker genes for use in transformation of monocotyledonous plants. Plant Mol. Biol. Rep. 11, 165-185.
60. Wu, H., Doherty, A., and, Jones, H.D., (2008) Efficient and rapid Agrobacterium-mediated genetic transformation of durum wheat (Triticum turgidum L. var. durum) using additional virulence genes. Transgenic Res. 17, 425-436.
61. Xu, J., Li, Y., Ma, X., Ding, J., Wang, K., Wang, S., Tian, Y., Zhang, H., and, Zhu, X.-G., (2013) Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C4 photosynthesis research. Plant Mol. Biol. 83, 77-87.
62. Yasmeen, A., Mirza, B., Inayatullah, S., Safdar, N., Jamil, M., Ali, S., and, Choudhry, M.F., (2009) In planta transformation of tomato. Plant Mol. Biol. Rep. 27, 20-28.
63. Ye, G.N., Stone, D., Pang, S.Z., Creely, W., Gonzalez, K., and, Hinchee, M., (1999) Arabidopsis ovule is the target for Agrobacterium in planta vacuum infiltration transformation. Plant J. 19, 249-257.
64. Zale, J.M., Agarwal, S., Loar, S., and, Steber, C.M., (2009) Evidence for stable transformation of wheat by floral dip in Agrobacterium tumefaciens. Plant Cell Rep. 28, 903-913.
65. Zhang, X., Henriques, R., Lin, S.S., Niu, Q.W., and, Chua, N.H., (2006) Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method. Nat. Protoc. 1, 641-646.