Three-dimensional (3D) structure prediction and function analysis of the chitin-binding domain 3 protein HD73-3189 from Bacillus thuringiensis HD73

Bio-Medical Materials and Engineering

Volumn 26, Issue , 2015, Pages S2019-S2024

  Zhan, Yiling ^a   Guo, Shuyuan ^a  

^a BEIJING INSTITUTE OF TECHNOLOGY   (China)

Author keywords

3D structure; Bacillus thuringiensis; chitin binding domain 3 protein; functional analysis

Indexed keywords

BACTERIOLOGY; CHITIN; FUNCTIONAL ANALYSIS; PROTEINS;

3D STRUCTURE; BACILLUS THURINGIENSIS; BACILLUS THURINGIENSIS HD-73; CARBOHYDRATE BINDING; CHITIN BINDING DOMAINS; CHITIN BINDING PROTEINS; COMPUTER TECHNOLOGY; THREE DIMENSIONAL (3D) STRUCTURES;

BINS;

AMINO ACID; BACTERIAL PROTEIN; BINDING PROTEIN; CHITIN; CHITIN BINDING DOMAIN 3 PROTEIN; FIBRONECTIN; SIGNAL PEPTIDE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS THURINGIENSIS; CONTROLLED STUDY; NONHUMAN; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; STRUCTURE ACTIVITY RELATION; CHEMICAL STRUCTURE; CHEMISTRY; METABOLISM; MOLECULAR GENETICS; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; BACILLUS THURINGIENSIS; BACTERIAL PROTEINS; CHITIN; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT;

EID: 84979092672     PISSN: 09592989     EISSN: 18783619     Source Type: Journal    
DOI: 10.3233/BME-151506     Document Type: Article

References (22)

1. E. Schnepf, N. Crickmore, J. Vanrie, D. Lereclus, J. Baum, J. Feitelson, D.R. Zeigler, and D.H. Dean. Bacillus thuringiensis, and Its Pesticidal Crystal Proteins. Microbiology, and Molecular Biology Reviews 62 (1998), 775-806
2. Andre Luiz de Almeida Melo. Vanete Thomaz Soccol, and Carlos Ricardo Soccol. Bacillus thuringiensis: Mechanism of action, resistance, and new applications: A review, Crit Rev Biotechnol 29 (2014), 0738-8551, 1-10
3. A.I. Aronson, and Y. Shai. Why Bacillus thuringiensis insecticidal toxins are so effective: Unique features of their mode of action. FEMS Microbiology Letters 195 (2001), 1-8
4. E. Cohen. Chitin synthesis, and degradation as targets for pesticide action. Archives of Insect Biochemistry, and Physiology 22 (1993), 245-261
5. J.A. Souza-Neto, D.S. Gusmao, and F.J.A. Lemos. Chitinolytic activities in the gut of Aedes aegypti (Diptera: Culicidae) larvae, and their role in digestion of chitin-rich structures. Comparative Biochemistry, and Physiology Part A 136 (2003), 717-724
6. M.J. Edwards, and M. Jacobs-Lorena. Permeability, and disruption of the peritrophic matrix, and caecal membrane from Aedes aegypti, and Anopheles gambiae mosquito larvae. Journal of Insect Physiology 9 (2000), 1313-1320
7. W.R. Terra. The origin, and functions of the insect peritrophic membrane, and peritrophic gel. Archives of Insect Biochemistry, and Physiology 47 (2001), 47-61
8. S. Li, M. Devenport, and M. Jacobs-Lorena. The peritrophic matrix of hematophagous insects. Archives of Insect Biochemistry, and Physiology 47 (2001), 119-125
9. A. Marchler-Bauer, C.J. Zheng, F. Chitsaz, M.K. Derbyshire, L.Y. Geer, R.C. Geer, N.R. Gonzales, M. Gwadz, D.I. Hurwitz, C.J. Lanczycki, F. Lu, S.N. Lu, G. H. Marchler, J.S. Song, N. Thanki, R.A. Yamashita, D.C. Zhang, and S.H. Bryant. CDD: Conserved domains, and protein three-dimensional structure. Nucleic Acids Research 41 (2013), D348-D352
10. E. Gasteiger, C. Hoogland, A. Gattiker, S. Duvaud, M.R. Wilkins, R.D. Appel, and A. Bairoch. Protein identification, and analysis tools, on the ExPASy Server, in: The Proteomics Protocols Handbook. J.M. Walker, ed., Humana Press Inc., Totowa, NJ, 2005, pp. 571-602
11. T.N. Petersen, S. Brunak, G. von Heijne, and H. Nielsen. SignalP4.0: Discriminating signal peptides from transmembrane regions. Nature Methods 8 (2011), 785-786
12. N.Y. Yu, J.R. Wagner, M.R. Laird, G. Melli, S. Rey, R. Lo, P. Dao, S.C. Sahinalp, M. Ester, L.J. Foster, and F.S.L. Brinkman. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories, and predictive capabilities for all prokaryotes. Bioinformation 26 (2010), 1608-1615
13. D.W. Buchan, F. Minneci, T.C. Nugent, K. Bryson, and D.T. Jones. Scalable web services for the PSIPRED protein analysis workbench. Nucleic Acids Research 41 (2013), W349-357
14. L.A. Kelley, and M.J. Sternberg. Protein structure prediction on the web: A case study using the phyre server. Nature Protocols 4 (2009), 363-371
15. N. Guex, M.C. Peitsch, and T. Schwede. Automated comparative protein structure modeling with Swiss-model, and Swiss-Pdbviewer: A historical perspective. Electrophoresis 30 (2009), S162-S173
16. M. Biasini, S. Bienert, A. Waterhouse, K. Arnold, G. Studer, T. Schmidt, F. Kiefer, T. Gallo Cassarino, M. Bertoni, L. Bordoli, and T.N. Schwede. Swiss-model: Modelling protein tertiary, and quaternary structure using evolutionary information. Nucleic Acids Research 42 (2014), W252-W258
17. G. Vaaje-Kolstad, S.J. Horn, D.M.F. Van Aalten, B. Synstad, and V.G.H. Eijsink. The Non-catalytic Chitin-binding Protein CBP21 from serratia marcescens is essential for chitin degradation. The Journal of Biological Chemistry 280 (2005), 28492-28497
18. U. Sehar, M.A. Mehmood, S. Nawaz, S. Nadeem, K. Hussain, I. Sohail, M.R. Tabassum, S.S. Gill, and A. Saqib. Three dimensional (3D) structure prediction, and substrate-protein interaction study of the chitin binding protein CBP24 from B. thuringiensis. Bioinformation 9 (2013), 725-729
19. U. Sehar, M.A. Mehmood, K. Hussain, S. Nawaz, S. Nadeem, M.H. Siddique, H. Nadeem, M. Gull, N. Ahmad, I. Sohail, S.S. Gill, and S. Majeed. Domain wise docking analyses of the modular chitin binding protein CBP50 from Bacillus thuringiensis serovar konkukian S4. Bioinformation 9 (2013), 901-907
20. D. Liu, J. Cai, C.C. Xie, C. Liu, and Y.H. Chen. Purification, and partial characterization of a 36-kDa chitinase from Bacillusthuringiensis subsp. colmeri, and its biocontrol potential. Enzyme, and Microbial Technology 46 (2010), 252-256
21. M.A. Mehmood, X. Xiao, F.Y. Hafeez, Y.B. Gai, and F.P. Wang. Molecular characterization of the modular chitin binding protein Cbp50 from Bacillus thuringiensis serovar konkukian. Antonie van Leeuwenhoek 100 (2011), 445-453
22. N. Arora, B. Sachdev, R. Gupta, Y. Vimala, and R.K. Bhatnagar. Characterization of a chitin-binding protein from Bacillus thuringiensis HD-1. PloS One 8 (2013), e66603