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3(b) Ruxolitinib for RA:Mesa, R.A., Yasothan, U., Kirkpatrick, P., Nat. Rev. Drug Disc., 11, 2012, 103.
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3(c) Ruxolitinib for myelofibrosis:Vaddi, K., Sarlis, N.J., Gupta, V., Expert Opin. Pharmacother., 13, 2012, 2397.
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4(b) Verstovsek, S., Kantarijian, H., Mesa, R.A., Pardanani, A.D., Cortes-Franco, J., Thomas, D.A., Estrov, Z., Fridman, J.-S., Bradley, E.C., Erickson-Viitanen, S., Vaddi, K., Levi, R., Tefferi, A., N. Engl. J. Med., 363, 2010, 1552.
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Laurence, A.1
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Compounds were tested in two cell-based assays for their ability to inhibit cytokine induced signaling, including (a) IL-6 stimulation related to JAK1/2-pSTAT3 pathway signaling and (b) EPO stimulation related to JAK2-pSTAT5 pathway signaling. In general, we have observed good correlation between the enzymatic JAK2/JAK1 ratio and the cell EPO/IL-6 ratio. See the Supporting information for more details.
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5 Compounds were tested in two cell-based assays for their ability to inhibit cytokine induced signaling, including (a) IL-6 stimulation related to JAK1/2-pSTAT3 pathway signaling and (b) EPO stimulation related to JAK2-pSTAT5 pathway signaling. In general, we have observed good correlation between the enzymatic JAK2/JAK1 ratio and the cell EPO/IL-6 ratio. See the Supporting information for more details.
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85043142190
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WO 2013/041042, A1.
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6(a) Brubaker, J.; Close, J.; Siu, T.; Smith, G. F.; Torres, L.; Woo, H. C.; Young, J.; Wei, Z.; Shi, F. WO 2013/041042, A1.
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Brubaker, J.1
Close, J.2
Siu, T.3
Smith, G.F.4
Torres, L.5
Woo, H.C.6
Young, J.7
Wei, Z.8
Shi, F.9
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85043101455
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WO 2013/043962, A1.
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6(b) Brubaker, J.; Childers, M. L.; Christopher, M.; Close, J.; Katz, J. D.; Jung, J.; Peterson, S.; Siliphaivanh, P.; Siu, T.; Smith, G. F.; Torres, L. E.; Woo, H. C.; Young, J. R.; Zhang, H. WO 2013/043962, A1.
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Brubaker, J.1
Childers, M.L.2
Christopher, M.3
Close, J.4
Katz, J.D.5
Jung, J.6
Peterson, S.7
Siliphaivanh, P.8
Siu, T.9
Smith, G.F.10
Torres, L.E.11
Woo, H.C.12
Young, J.R.13
Zhang, H.14
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14
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85043108218
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Abstracts of Papers, 248th ACS National Meeting & Exposition, San Francisco, CA, United States, MEDI-372.
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6(c) Zhang, H.; Siliphaivanh, P.; Siu, T.; Torres, L.; Brubaker, J.; Nagayoshi, M.; Martinez, M.; Close, J.; Childers, M.; MacCoss, R.; Young, J. R.; Dinsmore, C. J.; Jones, P.; Li, C.; Jung, J.; Pickford, F.; Deshmukh, S. V. Abstracts of Papers, 248th ACS National Meeting & Exposition, San Francisco, CA, United States, 2014; MEDI-372.
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(2014)
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Zhang, H.1
Siliphaivanh, P.2
Siu, T.3
Torres, L.4
Brubaker, J.5
Nagayoshi, M.6
Martinez, M.7
Close, J.8
Childers, M.9
MacCoss, R.10
Young, J.R.11
Dinsmore, C.J.12
Jones, P.13
Li, C.14
Jung, J.15
Pickford, F.16
Deshmukh, S.V.17
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15
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85043094880
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Prior to our work, pyridone benzimidazoles had been described in the literature as tyrosine kinase inhibitors having anti-cancer activity. See: Wittman, M. D.; Balasubramanian, N.; Velaparthi, U.; Zimmermann, K.; Saulnier, M. G.; Liu, P.; Sang, X.; Frennesson, D.; Stoffan, K. M.; Tarrant, J. G. WO 2002/079192, A1.
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7(a) Prior to our work, pyridone benzimidazoles had been described in the literature as tyrosine kinase inhibitors having anti-cancer activity. See: Wittman, M. D.; Balasubramanian, N.; Velaparthi, U.; Zimmermann, K.; Saulnier, M. G.; Liu, P.; Sang, X.; Frennesson, D.; Stoffan, K. M.; Tarrant, J. G. WO 2002/079192, A1.
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16
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53549109444
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7(b) Velaparthi, U., Wittman, M., Liu, P., Carboni, M.J., Lee, F.Y., Attar, R., Balimane, P., Clarke, W., Sinz, M.W., Hurlburt, W., Patel, K., Lorell, D., Kim, S., Gottardis, M., Greer, A., Li, A., Saulnier, M., Yang, Z., Zimmermann, K., Trainor, G., Vyas, D., J. Med. Chem., 51, 2008, 5897.
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Velaparthi, U.1
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Carboni, M.J.4
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Attar, R.6
Balimane, P.7
Clarke, W.8
Sinz, M.W.9
Hurlburt, W.10
Patel, K.11
Lorell, D.12
Kim, S.13
Gottardis, M.14
Greer, A.15
Li, A.16
Saulnier, M.17
Yang, Z.18
Zimmermann, K.19
Trainor, G.20
Vyas, D.21
more..
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17
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77953631827
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Ultimately, the goal was to achieve EPO/IL-6 pathway selectivity of 15-fold or higher in the cell-based pathway reporter gene assays in order to differentiate our compounds from the currently marketed pan-selective JAK inhibitors. For a discussion on previously reported strategies to displace or engage a conserved water molecule in medicinal chemistry, see:
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8(a) Ultimately, the goal was to achieve EPO/IL-6 pathway selectivity of 15-fold or higher in the cell-based pathway reporter gene assays in order to differentiate our compounds from the currently marketed pan-selective JAK inhibitors. For a discussion on previously reported strategies to displace or engage a conserved water molecule in medicinal chemistry, see:Stahl, M., Kuhn, B., Bissantz, C., J. Med. Chem. (Perspective), 53, 2010, 5061.
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Stahl, M.1
Kuhn, B.2
Bissantz, C.3
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18
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0028228418
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8(b) Dunitz, D.J., Science, 264, 1994, 670.
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Science
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Dunitz, D.J.1
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19
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84942823602
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For an example exploring the P-loop hypothesis toward JAK1 selectivity, see:
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9 For an example exploring the P-loop hypothesis toward JAK1 selectivity, see:Friedman, M., Frank, K.E., Aguirre, An., Argiriadi, M.A., Davis, H., Edmunds, J.J., George, D.M., George, S.J., Goedken, E., Fiamengo, B., Hyland, D., Li, B., Murtaza, A., Morytko, M., Somal, G., Stewart, K., Tarcsa, E., Van Epps, S., Voss, J., Wang, L., Woller, K., Wishart, N., Bioorg. Med. Chem. Lett., 25, 2015, 4399.
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Friedman, M.1
Frank, K.E.2
Aguirre, A.3
Argiriadi, M.A.4
Davis, H.5
Edmunds, J.J.6
George, D.M.7
George, S.J.8
Goedken, E.9
Fiamengo, B.10
Hyland, D.11
Li, B.12
Murtaza, A.13
Morytko, M.14
Somal, G.15
Stewart, K.16
Tarcsa, E.17
Van Epps, S.18
Voss, J.19
Wang, L.20
Woller, K.21
Wishart, N.22
more..
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85043111417
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Calculations were performed at the B3LYP/6-31+G(d) level of theory by using the G09 program in implicit solvent model (iefpcm).
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10 Calculations were performed at the B3LYP/6-31+G(d) level of theory by using the G09 program in implicit solvent model (iefpcm).
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21
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84879045959
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Upon completion of this work, a similar observation was made and published by Genentech in their effort to identify a JAK1-selective inhibitor. See:
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11 Upon completion of this work, a similar observation was made and published by Genentech in their effort to identify a JAK1-selective inhibitor. See:Zak, M., Hurley, A.C., Ward, S.I., Bergeron, P., Barrett, K., Balazs, M., Blair, W.S., Bull, R., Chakravarty, P., Chang, C., Crackett, P., Deshmukh, G., DeVoss, J., Dragovich, P.S., Eigenbrot, C., Ellwood, C., Gaines, S., Ghilardi, N., Gibbons, P., Gradl, S., Gribling, P., Hamman, C., Harstad, E., Hewitt, P., Johnson, A., Johnson, T., Kenny, J.R., Koehler, M.F.T., Bir Kohli, P., Labadie, S., Lee, W.P., Liao, J., Liimatta, M., Mendonca, R., Narukulla, R., Pulk, R., Reeve, A., Savage, S., Shia, S., Steffek, M., Ubhayakar, S., van Abbema, A., Aligas, I., Avitabile-Woo, B., Xiao, Y., Yang, J., Kulagowski, J.J., J. Med. Chem., 56, 2013, 4764.
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J. Med. Chem.
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Zak, M.1
Hurley, A.C.2
Ward, S.I.3
Bergeron, P.4
Barrett, K.5
Balazs, M.6
Blair, W.S.7
Bull, R.8
Chakravarty, P.9
Chang, C.10
Crackett, P.11
Deshmukh, G.12
DeVoss, J.13
Dragovich, P.S.14
Eigenbrot, C.15
Ellwood, C.16
Gaines, S.17
Ghilardi, N.18
Gibbons, P.19
Gradl, S.20
Gribling, P.21
Hamman, C.22
Harstad, E.23
Hewitt, P.24
Johnson, A.25
Johnson, T.26
Kenny, J.R.27
Koehler, M.F.T.28
Bir Kohli, P.29
Labadie, S.30
Lee, W.P.31
Liao, J.32
Liimatta, M.33
Mendonca, R.34
Narukulla, R.35
Pulk, R.36
Reeve, A.37
Savage, S.38
Shia, S.39
Steffek, M.40
Ubhayakar, S.41
van Abbema, A.42
Aligas, I.43
Avitabile-Woo, B.44
Xiao, Y.45
Yang, J.46
Kulagowski, J.J.47
more..
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22
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85043125696
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Functional selectivity for IL-6 signaling versus EPO signaling was performed by measuring the inhibition of EPO driven proliferation of human CD34+ hematopoietic stem cells and IL-6 driven secretion of MCP1 from human PBMCs.
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12 Functional selectivity for IL-6 signaling versus EPO signaling was performed by measuring the inhibition of EPO driven proliferation of human CD34+ hematopoietic stem cells and IL-6 driven secretion of MCP1 from human PBMCs.
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85043130955
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IL-7 signaling in human and/or rat whole blood was measured by stimulating with IL-7 and measuring pSTAT5 in the CD3+ CD4+ cell subset by flow cytometry.
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13 IL-7 signaling in human and/or rat whole blood was measured by stimulating with IL-7 and measuring pSTAT5 in the CD3+ CD4+ cell subset by flow cytometry.
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24
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85043142402
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Tested at Invitrogen using SelectScreen™ Kinase Profiling
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14 Tested at Invitrogen using SelectScreen™ Kinase Profiling (www.thermofisher.com).
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28044445893
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15(a) Whartenby, K.A., Calabresi, P.A., McCadden, E., Nguyen, B., Kardian, d., Thianhong, W., Mosse, C., Pardoll, D.M., Small, D., Proc. Natl. Acad. Sci. U.S.A., 102, 2005, 16741.
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Whartenby, K.A.1
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50activity relative to JAK1 was NUAK1. NUAK1 is a member of the AMPK (AMP-activated protein kinase) family of protein kinases that are activated by the LKB1 tumor suppressor kinase and plays an important role in regulating key biological processes, such as tumorigenesis, senescence, cell adhesion and neuronal polarity. There is some evidence suggesting that NUAK1 participates in induction of tumor survival, however, for the most part, its detailed biological functions remain unclear. See:
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16(a) The only measured non-JAK kinase that showed <100-fold IC50activity relative to JAK1 was NUAK1. NUAK1 is a member of the AMPK (AMP-activated protein kinase) family of protein kinases that are activated by the LKB1 tumor suppressor kinase and plays an important role in regulating key biological processes, such as tumorigenesis, senescence, cell adhesion and neuronal polarity. There is some evidence suggesting that NUAK1 participates in induction of tumor survival, however, for the most part, its detailed biological functions remain unclear. See:Hou, X., Liu, J.E., Liu, W., Liu, C.Y., Liu, Z.Y., Sun, Z.Y., Oncogene, 30, 2011, 2933.
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Sun, Z.Y.6
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16(b) Banerjee, S., Buhrlage, S.J., Huang, H.T., Deng, X., Zhou, W., Wang, J., Traynor, R., Prescott, A.R., Alessi, D.R., Gray, N.S., Biochem. J., 457, 2014, 215.
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Banerjee, S.1
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Traynor, R.7
Prescott, A.R.8
Alessi, D.R.9
Gray, N.S.10
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WO 2005/105814, A1.
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17 Rodgers, J. D.; Robinson, D. J.; Arvanitis, A. G.; Maduskuie, T. P. Jr.; Shepard, S.; Storace, L.; Wang, H.; Rafalski, M.; Jalluri, R. K.; Combs, A. P.; Crawley, M. L. WO 2005/105814, A1.
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Rodgers, J.D.1
Robinson, D.J.2
Arvanitis, A.G.3
Maduskuie, T.P.4
Shepard, S.5
Storace, L.6
Wang, H.7
Rafalski, M.8
Jalluri, R.K.9
Combs, A.P.10
Crawley, M.L.11
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