Attomolar Zika virus oligonucleotide detection based on loop-mediated isothermal amplification and AC susceptometry

Biosensors and Bioelectronics

Volumn 86, Issue , 2016, Pages 420-425

  Tian, Bo ^a   Qiu, Zhen ^a   Ma, Jing ^b   Zardán Gómez de la Torre, Teresa ^a   Johansson, Christer ^c   Svedlindh, Peter ^a   Strömberg, Mattias ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b UPPSALA UNIVERSITY   (Sweden)

^c ACREO AB   (Sweden)

Author keywords

AC susceptometer; Brownian relaxation; Loop mediated isothermal amplification; Magnetic nanoparticles; Zika virus

Indexed keywords

AMPLIFICATION; CHEMICAL REACTIONS; FLUID DYNAMICS; HYDRODYNAMICS; ISOTHERMS; NANOMAGNETICS; NANOPARTICLES; OLIGONUCLEOTIDES; PROTEINS; VIRUSES;

AC SUSCEPTOMETER; BROWNIAN RELAXATIONS; HOMOGENEOUS DETECTIONS; HYDRODYNAMIC VOLUMES; LOOP MEDIATED ISOTHERMAL AMPLIFICATIONS; MAGNETIC NANO-PARTICLES; OLIGONUCLEOTIDE DETECTION; REVERSE TRANSCRIPTION-POLYMERASE CHAIN REACTION;

POLYMERASE CHAIN REACTION;

MAGNETIC NANOPARTICLE; METAL NANOPARTICLE; VIRUS DNA;

AC SUSCEPTOMETRY; AGAR GEL ELECTROPHORESIS; ARTICLE; BIOASSAY; CROSS REACTION; HUMAN; HYDRODYNAMICS; INCUBATION TIME; INFECTION CONTROL; LIMIT OF DETECTION; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; NUCLEOTIDE SEQUENCE; PROCESS OPTIMIZATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SCANNING ELECTRON MICROSCOPY; SEROLOGY; VIRUS DETECTION; VIRUS LOAD; ZIKA FEVER; ZIKA VIRUS; CHEMISTRY; DEVICE FAILURE ANALYSIS; DEVICES; DNA SEQUENCE; EQUIPMENT DESIGN; GENETICS; ISOLATION AND PURIFICATION; MAGNETOMETRY; NUCLEIC ACID AMPLIFICATION; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY;

DNA, VIRAL; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; MAGNETOMETRY; METAL NANOPARTICLES; MICROCHEMISTRY; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; ZIKA VIRUS;

EID: 84978245055     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2016.06.085     Document Type: Article

References (39)

1. Al-Qahtani, A.A., Nazir, N., Al-Anazi, M.R., Rubino, S., Al-Ahdal, M.N., J. Infect. Dev. Ctries. 10:3 (2016), 201–207.
2. Astalan, A.P., Ahrentorp, F., Johansson, C., Larsson, K., Krozer, A., Biosens. Bioelectron. 19:8 (2004), 945–951.
3. Barzon, L., Pacenti, M., Berto, A., Sinigaglia, A., Franchin, E., Lavezzo, E., Brugnaro, P., Palu, G., Eur. Surveill. 21:10 (2016), 2–6.
4. Brasil, P., Pereira, J.P. Jr., Raja Gabaglia, C., Damasceno, L., Wakimoto, M., Ribeiro Nogueira, R.M., Carvalho de Sequeira, P., Machado Siqueira, A., Abreu de Carvalho, L.M., Cotrim da Cunha, D., Calvet, G.A., Neves, E.S., Moreira, M.E., Rodrigues Baiao, A.E., Nassar de Carvalho, P.R., Janzen, C., Valderramos, S.G., Cherry, J.D., Bispo de Filippis, A.M., Nielsen-Saines, K., N. Engl. J. Med., 2016.
5. Broutet, N., Krauer, F., Riesen, M., Khalakdina, A., Almiron, M., Aldighieri, S., Espinal, M., Low, N., Dye, C., N. Engl. J. Med. 374:16 (2016), 1506–1509.
6. Buathong, R., Hermann, L., Thaisomboonsuk, B., Rutvisuttinunt, W., Klungthong, C., Chinnawirotpisan, P., Manasatienkij, W., Nisalak, A., Fernandez, S., Yoon, I.K., Akrasewi, P., Plipat, T., Am. J. Trop. Med. Hyg. 93:2 (2015), 380–383.
7. Calvet, G., Aguiar, R.S., Melo, A.S., Sampaio, S.A., de Filippis, I., Fabri, A., Araujo, E.S., de Sequeira, P.C., de Mendonca, M.C., de Oliveira, L., Tschoeke, D.A., Schrago, C.G., Thompson, F.L., Brasil, P., Dos Santos, F.B., Nogueira, R.M., Tanuri, A., de Filippis, A.M., Lancet Infect. Dis., 2016.
8. Campos, G.S., Bandeira, A.C., Sardi, S.I., Emerg. Infect. Dis. 21:10 (2015), 1885–1886.
9. Cao-Lormeau, V.M., Blake, A., Mons, S., Lastere, S., Roche, C., Vanhomwegen, J., Dub, T., Baudouin, L., Teissier, A., Larre, P., Vial, A.L., Decam, C., Choumet, V., Halstead, S.K., Willison, H.J., Musset, L., Manuguerra, J.C., Despres, P., Fournier, E., Mallet, H.P., Musso, D., Fontanet, A., Neil, J., Ghawche, F., Lancet 387:10027 (2016), 1531–1539.
10. D'Ortenzio, E., Matheron, S., de Lamballerie, X., Hubert, B., Piorkowski, G., Maquart, M., Descamps, D., Damond, F., Yazdanpanah, Y., Leparc-Goffart, I., N. Engl. J. Med., 2016.
11. Donolato, M., Antunes, P., Bejhed, R.S., Zardán Gómez de la Torre, T., Østerberg, F.W., Strömberg, M., Nilsson, M., Strømme, M., Svedlindh, P., Hansen, M.F., Vavassori, P., Anal. Chem. 87:3 (2015), 1622–1629.
12. Fauci, A.S., Morens, D.M., N. Engl. J. Med. 374:7 (2016), 601–604.
13. Faye, O., Faye, O., Diallo, D., Diallo, M., Weidmann, M., Sall, A.A., Virol. J., 10, 2013, 311.
14. Faye, O., Faye, O., Dupressoir, A., Weidmann, M., Ndiaye, M., Alpha Sall, A., J. Clin. Virol. 43:1 (2008), 96–101.
15. Foy, B.D., Kobylinski, K.C., Chilson Foy, J.L., Blitvich, B.J., Travassos da Rosa, A., Haddow, A.D., Lanciotti, R.S., Tesh, R.B., Emerg. Infect. Dis. 17:5 (2011), 880–882.
16. Goeijenbier, M., Slobbe, L., van der Eijk, A., de Mendonca Melo, M., Koopmans, M.P., Reusken, C.B., Neth. J. Med. 74:3 (2016), 104–109.
17. Gourinat, A.C., O'Connor, O., Calvez, E., Goarant, C., Dupont-Rouzeyrol, M., Emerg. Infect. Dis. 21:1 (2015), 84–86.
18. Haug, C.J., Kieny, M.P., Murgue, B., N. Engl. J. Med., 2016.
19. Heukelbach, J., Alencar, C.H., Kelvin, A.A., De Oliveira, W.K., Pamplona de Goes Cavalcanti, L., J. Infect. Dev. Ctries. 10:2 (2016), 116–120.
20. Korzeniewski, K., Juszczak, D., Zwolinska, E., Int. Marit. Health 67:1 (2016), 31–37.
21. Kuno, G., Chang, G.J., Tsuchiya, K.R., Karabatsos, N., Cropp, C.B., J. Virol. 72:1 (1998), 73–83.
22. Lanciotti, R.S., Kosoy, O.L., Laven, J.J., Velez, J.O., Lambert, A.J., Johnson, A.J., Stanfield, S.M., Duffy, M.R., Emerg. Infect. Dis. 14:8 (2008), 1232–1239.
23. Marano, G., Pupella, S., Vaglio, S., Liumbruno, G.M., Grazzini, G., Blood Transfus. 14:2 (2016), 95–100.
24. Melo, A.S.O., Malinger, G., Ximenes, R., Szejnfeld, P.O., Sampaio, S.A., de Filippis, A.M.B., Ultrasound Obstet. Gynecol. 47:1 (2016), 6–7.
25. Mori, Y., Nagamine, K., Tomita, N., Notomi, T., Biochem. Biophys. Res. Commun. 289:1 (2001), 150–154.
26. Musso, D., Nhan, T., Robin, E., Roche, C., Bierlaire, D., Zisou, K., Yan, A.S., Cao-Lormeau, V.M., Broult, J., Eur. Surveill. 19:14 (2014), 6–8.
27. Musso, D., Roche, C., Nhan, T.X., Robin, E., Teissier, A., Cao-Lormeau, V.M., J. Clin. Virol. 68 (2015), 53–55.
28. Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N., Hase, T., Nucleic Acids Res., 28(12), 2000, E63.
29. Oster, A.M., Brooks, J.T., Stryker, J.E., Kachur, R.E., Mead, P., Pesik, N.T., Petersen, L.R., Morb. Mortal. Wkly. Rep. 65:5 (2016), 120–121.
30. Petersen, L.R., Jamieson, D.J., Powers, A.M., Honein, M.A., N. Engl. J. Med. 374:16 (2016), 1552–1563.
31. Rodriguez-Morales, A.J., J. Infect. Dev. Ctries. 9:6 (2015), 684–685.
32. Schuler-Faccini, L., Ribeiro, E.M., Feitosa, I.M.L., Horovitz, D.D.G., Cavalcanti, D.P., Pessoa, A., Doriqui, M.J.R., Neri, J.I., Neto, J.M.D., Wanderley, H.Y.C., Cernach, M., El-Husny, A.S., Pone, M.V.S., Serao, C.L.C., Sanseverino, M.T.V., Embry, B.M.G.S.Z., Morb. Mortal. Wkly. Rep. 65:3 (2016), 59–62.
33. Sikka, V., Chattu, V.K., Popli, R.K., Galwankar, S.C., Kelkar, D., Sawicki, S.G., Stawicki, S.P., Papadimos, T.J., J. Glob. Infect. Dis. 8:1 (2016), 3–15.
34. Tian, B., Bejhed, R.S., Svedlindh, P., Strömberg, M., Biosens. Bioelectron. 77 (2016), 32–39.
35. Tian, B., Ma, J., Zardán Gómez de la Torre, T., Bálint, Á., Donolato, M., Hansen, M.F., Svedlindh, P., Strömberg, M., 2016b. (submitted for publication).
36. Tognarelli, J., Ulloa, S., Villagra, E., Lagos, J., Aguayo, C., Fasce, R., Parra, B., Mora, J., Becerra, N., Lagos, N., Vera, L., Olivares, B., Vilches, M., Fernandez, J., Arch. Virol. 161:3 (2016), 665–668.
37. Tomita, N., Mori, Y., Kanda, H., Notomi, T., Nat. Protoc. 3:5 (2008), 877–882.
38. Venturi, G., Zammarchi, L., Fortuna, C., Remoli, M.E., Benedetti, E., Fiorentini, C., Trotta, M., Rizzo, C., Mantella, A., Rezza, G., Bartoloni, A., Eur. Surveill. 21:8 (2016), 2–5.
39. Zardán Gómez de la Torre, T., Mezger, A., Herthnek, D., Johansson, C., Svedlindh, P., Nilsson, M., Strømme, M., Biosens. Bioelectron. 29:1 (2011), 195–199.