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Volumn 61, Issue 1, 2016, Pages 20-25

Comparison of fluorescent intercalating dyes for quantitative loop-mediated isothermal amplification (qLAMP)

Author keywords

Bst DNA polymerase; Eva green; Isothermal amplification; LAMP; SYBR gold; SYBR green I; SYTO 13; SYTO 82; SYTO 9

Indexed keywords

EVAGREEN; FLUORESCENT DYE; GENOMIC DNA; INTERCALATING AGENT; SYBR GOLD; SYBR GREEN I; SYTO 13; SYTO 82; SYTO 9; UNCLASSIFIED DRUG; DNA; ORGANIC COMPOUND;

EID: 84978138974     PISSN: 07366205     EISSN: 19409818     Source Type: Journal    
DOI: 10.2144/000114432     Document Type: Article
Times cited : (87)

References (26)
  • 1
    • 0026418667 scopus 로고
    • Nucleic acid sequence-based amplification
    • Compton, J. 1991. Nucleic acid sequence-based amplification. Nature 350: 91-92.
    • (1991) Nature , vol.350 , pp. 91-92
    • Compton, J.1
  • 2
    • 0029079406 scopus 로고
    • Rolling replication of short DNA circles
    • Fire, A., and S.Q. Xu. 1995. Rolling replication of short DNA circles. Proc Natl Acad Sci U S A. 92: 4641-4645.
    • (1995) Proc Natl Acad Sci U S A. , vol.92 , pp. 4641-4645
    • Fire, A.1    Xu, S.Q.2
  • 4
    • 0035379777 scopus 로고    scopus 로고
    • Specific detection of DNA and RNA targets using a novel isothermal nucleic acid amplification assay based on the formation of a three-way junction structure
    • Wharam, S.D., P. Marsh, J.S. Lloyd, T.D. Ray, G.A. Mock, R. Assenberg, J.E. McPhee, P. Brown, et al. 2001. Specific detection of DNA and RNA targets using a novel isothermal nucleic acid amplification assay based on the formation of a three-way junction structure. Nucleic Acids Res. 29: E54.
    • (2001) Nucleic Acids Res. , vol.29 , pp. E54
    • Wharam, S.D.1    Marsh, P.2    Lloyd, J.S.3    Ray, T.D.4    Mock, G.A.5    Assenberg, R.6    McPhee, J.E.7    Brown, P.8
  • 5
    • 4444258850 scopus 로고    scopus 로고
    • Helicase-dependent isothermal DNA amplification
    • Vincent, M., Y. Xu, and H. Kong. 2004. Helicase-dependent isothermal DNA amplification. EMBO Rep. 5: 795-800.
    • (2004) EMBO Rep. , vol.5 , pp. 795-800
    • Vincent, M.1    Xu, Y.2    Kong, H.3
  • 6
    • 25444523728 scopus 로고    scopus 로고
    • Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications
    • Kurn, N., P. Chen, J.D. Heath, A. Kopf-Sill, K.M. Stephens, and S. Wang. 2005. Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications. Clin. Chem. 51: 1973-1981.
    • (2005) Clin. Chem. , vol.51 , pp. 1973-1981
    • Kurn, N.1    Chen, P.2    Heath, J.D.3    Kopf-Sill, A.4    Stephens, K.M.5    Wang, S.6
  • 8
    • 0035940965 scopus 로고    scopus 로고
    • Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation
    • Mori, Y., K. Nagamine, N. Tomita, and T. Notomi. 2001. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 289: 150-154.
    • (2001) Biochem. Biophys. Res. Commun. , vol.289 , pp. 150-154
    • Mori, Y.1    Nagamine, K.2    Tomita, N.3    Notomi, T.4
  • 11
    • 65449166818 scopus 로고    scopus 로고
    • Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue
    • Goto, M., E. Honda, A. Ogura, A. Nomoto, and K.-I. Hanaki. 2009. Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46: 167-172.
    • (2009) Biotechniques , vol.46 , pp. 167-172
    • Goto, M.1    Honda, E.2    Ogura, A.3    Nomoto, A.4    Hanaki, K.-I.5
  • 12
    • 43149084823 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products
    • Tomita, N., Y. Mori, H. Kanda, and T. Notomi. 2008. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat. Protoc. 3: 877-882.
    • (2008) Nat. Protoc. , vol.3 , pp. 877-882
    • Tomita, N.1    Mori, Y.2    Kanda, H.3    Notomi, T.4
  • 13
    • 84865064820 scopus 로고    scopus 로고
    • Simultaneous multiple target detection in real-time loop-mediated isothermal amplification
    • Tanner, N.A., Y. Zhang, and T.C. Evans. 2012. Simultaneous multiple target detection in real-time loop-mediated isothermal amplification. Biotechniques 53: 81-89.
    • (2012) Biotechniques , vol.53 , pp. 81-89
    • Tanner, N.A.1    Zhang, Y.2    Evans, T.C.3
  • 14
    • 79952187275 scopus 로고    scopus 로고
    • Real-time target-specific detection of loop-mediated isothermal amplification for white spot syndrome virus using fluorescence energy transfer-based probes
    • Chou, P.-H., Y.-C. Lin, P.-H. Teng, C.-L. Chen, and P.-Y. Lee. 2011. Real-time target-specific detection of loop-mediated isothermal amplification for white spot syndrome virus using fluorescence energy transfer-based probes. J. Virol. Methods 173: 67-74.
    • (2011) J. Virol. Methods , vol.173 , pp. 67-74
    • Chou, P.-H.1    Lin, Y.-C.2    Teng, P.-H.3    Chen, C.-L.4    Lee, P.-Y.5
  • 15
    • 34547728059 scopus 로고    scopus 로고
    • Technique for quantitative detection of specific DNA sequences using alternately binding quenching probe competitive assay combined with loop-mediated isothermal amplification
    • Tani, H., T. Teramura, K. Adachi, S. Tsuneda, S. Kurata, K. Nakamura, T. Kanagawa, and N. Noda. 2007. Technique for quantitative detection of specific DNA sequences using alternately binding quenching probe competitive assay combined with loop-mediated isothermal amplification. Anal. Chem. 79: 5608-5613.
    • (2007) Anal. Chem. , vol.79 , pp. 5608-5613
    • Tani, H.1    Teramura, T.2    Adachi, K.3    Tsuneda, S.4    Kurata, S.5    Nakamura, K.6    Kanagawa, T.7    Noda, N.8
  • 17
    • 36148978172 scopus 로고    scopus 로고
    • Comparison of multiple DNA dyes for real-time PCR: Effects of dye concentration and sequence composition on DNA amplification and melting temperature
    • Gudnason, H., M. Dufva, D.D. Bang, and A. Wolff. 2007. Comparison of multiple DNA dyes for real-time PCR: effects of dye concentration and sequence composition on DNA amplification and melting temperature. Nucleic Acids Res. 35: e127.
    • (2007) Nucleic Acids Res. , vol.35 , pp. e127
    • Gudnason, H.1    Dufva, M.2    Bang, D.D.3    Wolff, A.4
  • 18
    • 79960653378 scopus 로고    scopus 로고
    • SYTO dyes and EvaGreen outperform SYBR Green in real-time PCR
    • Eischeid, A.C. 2011. SYTO dyes and EvaGreen outperform SYBR Green in real-time PCR. BMC Res. Notes 4: 263.
    • (2011) BMC Res. Notes , vol.4 , pp. 263
    • Eischeid, A.C.1
  • 19
    • 84927515856 scopus 로고    scopus 로고
    • Shining a light on LAMP assays--a comparison of LAMP visualization methods including the novel use of berberine
    • Fischbach, J., N.C. Xander, M. Frohme, and J.F. Glökler. 2015. Shining a light on LAMP assays--a comparison of LAMP visualization methods including the novel use of berberine. Biotechniques 58: 189-194.
    • (2015) Biotechniques , vol.58 , pp. 189-194
    • Fischbach, J.1    Xander, N.C.2    Frohme, M.3    Glökler, J.F.4
  • 21
    • 84865431703 scopus 로고    scopus 로고
    • A polymer microfluidic chip for quantitative detection of multiple water-and foodborne pathogens using real-time fluorogenic loop-mediated isothermal amplification
    • Tourlousse, D.M., F. Ahmad, R.D. Stedtfeld, G. Seyrig, J.M. Tiedje, and S.A. Hashsham. 2012. A polymer microfluidic chip for quantitative detection of multiple water-and foodborne pathogens using real-time fluorogenic loop-mediated isothermal amplification. Biomed. Microdevices 14: 769-778.
    • (2012) Biomed. Microdevices , vol.14 , pp. 769-778
    • Tourlousse, D.M.1    Ahmad, F.2    Stedtfeld, R.D.3    Seyrig, G.4    Tiedje, J.M.5    Hashsham, S.A.6
  • 22
    • 84871913034 scopus 로고    scopus 로고
    • (Fourth Edition). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Green, M.R. and J. Sambrook. 2012. Molecular Cloning: A Laboratory Manual (Fourth Edition). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (2012) Molecular Cloning: A Laboratory Manual
    • Green, M.R.1    Sambrook, J.2
  • 23
    • 84872075038 scopus 로고    scopus 로고
    • Real-time electrochemical detection of pathogen DNA using electrostatic interaction of a redox probe
    • Ahmed, M.U., S. Nahar, M. Safavieh, and M. Zourob. 2013. Real-time electrochemical detection of pathogen DNA using electrostatic interaction of a redox probe. Analyst 138: 907-915.
    • (2013) Analyst , vol.138 , pp. 907-915
    • Ahmed, M.U.1    Nahar, S.2    Safavieh, M.3    Zourob, M.4
  • 24
    • 84874448427 scopus 로고    scopus 로고
    • Development of simple and rapid assay to detect viral RNA of tick-borne encephalitis virus by reverse transcription-loop-mediated isothermal amplification
    • Hayasaka, D., K. Aoki, and K. Morita. 2013. Development of simple and rapid assay to detect viral RNA of tick-borne encephalitis virus by reverse transcription-loop-mediated isothermal amplification. Virol. J. 10: 68.
    • (2013) Virol. J. , vol.10 , pp. 68
    • Hayasaka, D.1    Aoki, K.2    Morita, K.3
  • 25
    • 3142708522 scopus 로고    scopus 로고
    • Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications
    • Zipper, H., H. Brunner, J. Bernhagen, and F. Vitzthum. 2004. Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications. Nucleic Acids Res. 32: e103.
    • (2004) Nucleic Acids Res. , vol.32 , pp. e103
    • Zipper, H.1    Brunner, H.2    Bernhagen, J.3    Vitzthum, F.4
  • 26
    • 58149345817 scopus 로고    scopus 로고
    • Fluorescence acquisition during hybridization phase in quantitative real-time PCR improves specificity and signal-to-noise ratio
    • Mehndiratta, M., J.K. Palanichamy, P. Ramalingam, A. Pal, P. Das, S. Sinha, and P. Chattopadhyay. 2008. Fluorescence acquisition during hybridization phase in quantitative real-time PCR improves specificity and signal-to-noise ratio. Biotechniques 45: 625-630.
    • (2008) Biotechniques , vol.45 , pp. 625-630
    • Mehndiratta, M.1    Palanichamy, J.K.2    Ramalingam, P.3    Pal, A.4    Das, P.5    Sinha, S.6    Chattopadhyay, P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.