-
1
-
-
79959683204
-
Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcane
-
Heller-Uszynska K, Uszynski G, Huttner E, Evers M, Carlig J, Caig V, Aitken K, Jackson P, Piperidis G, Cox M, Gilmour R, D'Hont A, Butterfield M, Glaszmann JC, Kilian A. Diversity Arrays Technology effectively reveals DNA polymorphism in a large and complex genome of sugarcane. Mol Breed. 2011;28:37-55.
-
(2011)
Mol Breed
, vol.28
, pp. 37-55
-
-
Heller-Uszynska, K.1
Uszynski, G.2
Huttner, E.3
Evers, M.4
Carlig, J.5
Caig, V.6
Aitken, K.7
Jackson, P.8
Piperidis, G.9
Cox, M.10
Gilmour, R.11
D'Hont, A.12
Butterfield, M.13
Glaszmann, J.C.14
Kilian, A.15
-
2
-
-
84973496335
-
-
In: Heinz DJ, editor. Sugarcane improvement through breeding. Amsterdam: Elsevier Press
-
Daniels J, Roach BT. Taxonomy and evolution. In: Heinz DJ, editor. Sugarcane improvement through breeding. Amsterdam: Elsevier Press; 1987. p. 7-84.
-
(1987)
Taxonomy and evolution
, pp. 7-84
-
-
Daniels, J.1
Roach, B.T.2
-
3
-
-
30644463094
-
Sucrose synthase molecular marker associated with sugar content in elite sugarcane progeny
-
Silva JA, Bressiani JA. Sucrose synthase molecular marker associated with sugar content in elite sugarcane progeny. Genet Mol Biol. 2005;28:294-8.
-
(2005)
Genet Mol Biol
, vol.28
, pp. 294-298
-
-
Silva, J.A.1
Bressiani, J.A.2
-
4
-
-
0035949653
-
Structure of linkage disequilibrium and phenotypic associations in the maize genome
-
Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR, Doebley J, Kresovich S, Goodman MM, Buckler ESIY. Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Natl Acad Sci USA. 2001;98(20):11479-84.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, Issue.20
, pp. 11479-11484
-
-
Remington, D.L.1
Thornsberry, J.M.2
Matsuoka, Y.3
Wilson, L.M.4
Whitt, S.R.5
Doebley, J.6
Kresovich, S.7
Goodman, M.M.8
Buckler, E.S.I.Y.9
-
5
-
-
5144221069
-
Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars
-
Kraakman ATW, Niks RE, Van den Berg PMM, Stam P, Van Eeuwijk FA. Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics. 2004;168:435-46.
-
(2004)
Genetics
, vol.168
, pp. 435-446
-
-
Kraakman, A.T.W.1
Niks, R.E.2
Berg, P.M.M.3
Stam, P.4
Eeuwijk, F.A.5
-
6
-
-
33644781694
-
Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
-
Breseghello F, Sorrells ME. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics. 2006;172:1165-77.
-
(2006)
Genetics
, vol.172
, pp. 1165-1177
-
-
Breseghello, F.1
Sorrells, M.E.2
-
7
-
-
33947323124
-
Association mapping of yield and its components in rice cultivars
-
Agrama HA, Eizenga GC, Yan W. Association mapping of yield and its components in rice cultivars. Mol Breed. 2007;19:341-56.
-
(2007)
Mol Breed
, vol.19
, pp. 341-356
-
-
Agrama, H.A.1
Eizenga, G.C.2
Yan, W.3
-
8
-
-
42149113457
-
Association mapping of quality traits in potato (Solanum tuberosum L.)
-
D'hoop BB, Paulo MJ, Mank RA, van Eck HJ, van Eeuwijk FA. Association mapping of quality traits in potato (Solanum tuberosum L.). Euphytica. 2008;161:47-60.
-
(2008)
Euphytica
, vol.161
, pp. 47-60
-
-
D'hoop, B.B.1
Paulo, M.J.2
Mank, R.A.3
Eck, H.J.4
Eeuwijk, F.A.5
-
9
-
-
53849092335
-
Association mapping in multiple segregating populations of sugar beet (Beta vulgaris L.)
-
Stich B, Melchinger AE, Heckenberger M, Möhring J, Schechert A, Piepho H-P. Association mapping in multiple segregating populations of sugar beet (Beta vulgaris L.). Theor Appl Genet. 2008;117:1167-79.
-
(2008)
Theor Appl Genet
, vol.117
, pp. 1167-1179
-
-
Stich, B.1
Melchinger, A.E.2
Heckenberger, M.3
Möhring, J.4
Schechert, A.5
Piepho, H.-P.6
-
11
-
-
0036008761
-
Applications of single nucleotide polymorphisms in crop genetics
-
Rafalski A. Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol. 2002;5:94-100.
-
(2002)
Curr Opin Plant Biol
, vol.5
, pp. 94-100
-
-
Rafalski, A.1
-
12
-
-
0032701458
-
Linkage disequilibrium among modern sugarcane cultivars
-
Jannoo N, Grivet L, Dookun A, D'Hont A, Glaszmann JC. Linkage disequilibrium among modern sugarcane cultivars. Theor Appl Genet. 1999;99:1053-60.
-
(1999)
Theor Appl Genet
, vol.99
, pp. 1053-1060
-
-
Jannoo, N.1
Grivet, L.2
Dookun, A.3
D'Hont, A.4
Glaszmann, J.C.5
-
13
-
-
40049087265
-
Analysis of genome-wide linkage disequilibrium in the highly polyploid sugarcane
-
Raboin LM, Pauquet J, Butterfield M, D'Hont A, Glaszmann JC. Analysis of genome-wide linkage disequilibrium in the highly polyploid sugarcane. Theor Appl Genet. 2008;116:701-14.
-
(2008)
Theor Appl Genet
, vol.116
, pp. 701-714
-
-
Raboin, L.M.1
Pauquet, J.2
Butterfield, M.3
D'Hont, A.4
Glaszmann, J.C.5
-
14
-
-
0034758055
-
The importance of genealogy in determining genetic associations with complex traits
-
Newman DL, Abney M, McPeek MS, Ober C, Cox NJ. The importance of genealogy in determining genetic associations with complex traits. Am J Hum Genet. 2001;69:1146-8.
-
(2001)
Am J Hum Genet
, vol.69
, pp. 1146-1148
-
-
Newman, D.L.1
Abney, M.2
McPeek, M.S.3
Ober, C.4
Cox, N.J.5
-
15
-
-
11244279011
-
An Icelandic example of the impact of population structure on association studies
-
Helgason A, Yngvadttir B, Hrafnkelsson B, Gulcher J, Stefnsson K. An Icelandic example of the impact of population structure on association studies. Nat Genet. 2005;37:90-5.
-
(2005)
Nat Genet
, vol.37
, pp. 90-95
-
-
Helgason, A.1
Yngvadttir, B.2
Hrafnkelsson, B.3
Gulcher, J.4
Stefnsson, K.5
-
17
-
-
31744440502
-
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
-
Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet. 2006;38:203-8.
-
(2006)
Nat Genet
, vol.38
, pp. 203-208
-
-
Yu, J.1
Pressoir, G.2
Briggs, W.H.3
Vroh Bi, I.4
Yamasaki, M.5
Doebley, J.F.6
McMullen, M.D.7
Gaut, B.S.8
Nielsen, D.M.9
Holland, J.B.10
Kresovich, S.11
Buckler, E.S.12
-
18
-
-
4344669547
-
In silico mapping of quantitative trait loci in maize
-
Parisseaux B, Bernado R. In silico mapping of quantitative trait loci in maize. Theor Appl Genet. 2004;109:508-14.
-
(2004)
Theor Appl Genet
, vol.109
, pp. 508-514
-
-
Parisseaux, B.1
Bernado, R.2
-
19
-
-
34247853365
-
A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato
-
Malosetti M, van der Linden CG, Vosman B, van Eeuwijk F. A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato. Genetics. 2007;175:879-89.
-
(2007)
Genetics
, vol.175
, pp. 879-889
-
-
Malosetti, M.1
Linden, C.G.2
Vosman, B.3
Eeuwijk, F.4
-
20
-
-
33746795234
-
The fast and the cheap: SNP and DArT-based whole genome profiling for crop improvement
-
27-31 May 2003; Bologna, Italy
-
Kilian A, Huttner E, Wenzl P, Jaccoud D, Carling J, Caig V, Evers M, Heller-Uszynska K, Cayla C, Patarapuwadol S, Xia L, Yang S, Thomson B: The fast and the cheap: SNP and DArT-based whole genome profiling for crop improvement. In Proceedings of the international congress in the wake of the double helix: from the green revolution to the gene revolution: 27-31 May 2003; Bologna, Italy; 2005:443-461.
-
(2005)
In Proceedings of the international congress in the wake of the double helix: from the green revolution to the gene revolution
, pp. 443-461
-
-
Kilian, A.1
Huttner, E.2
Wenzl, P.3
Jaccoud, D.4
Carling, J.5
Caig, V.6
Evers, M.7
Heller-Uszynska, K.8
Cayla, C.9
Patarapuwadol, S.10
Xia, L.11
Yang, S.12
Thomson, B.13
-
21
-
-
32344447771
-
Target region amplification polymorphism (TRAP) for assessing genetic diversity in sugarcane germplasm collections
-
Alwala S, Suman A, Arro JA, Veremis JC, Kimbeng CA. Target region amplification polymorphism (TRAP) for assessing genetic diversity in sugarcane germplasm collections. Crop Sci. 2006;46:448-55.
-
(2006)
Crop Sci
, vol.46
, pp. 448-455
-
-
Alwala, S.1
Suman, A.2
Arro, J.A.3
Veremis, J.C.4
Kimbeng, C.A.5
-
22
-
-
77954027430
-
Genetic variability among sugarcane genotypes based on polymorphisms in sucrose metabolism and drought tolerance genes
-
Creste S, Accoroni KA, Pinto LR, Vencovsky R, Gimenes MA, Xavier MA, Landell MG. Genetic variability among sugarcane genotypes based on polymorphisms in sucrose metabolism and drought tolerance genes. Euphytica. 2010;172:435-46.
-
(2010)
Euphytica
, vol.172
, pp. 435-446
-
-
Creste, S.1
Accoroni, K.A.2
Pinto, L.R.3
Vencovsky, R.4
Gimenes, M.A.5
Xavier, M.A.6
Landell, M.G.7
-
23
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, et al. The Sorghum bicolor genome and the diversification of grasses. Nature. 2009;457:551-6.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
Schmutz, J.11
Spannagl, M.12
Tang, H.13
Wang, X.14
Wicker, T.15
Bharti, A.K.16
Chapman, J.17
Feltus, F.A.18
Gowik, U.19
Grigoriev, I.V.20
Lyons, E.21
Maher, C.A.22
Martis, M.23
Narechania, A.24
Otillar, R.P.25
Penning, B.W.26
Salamov, A.A.27
Wang, Y.28
Zhang, L.29
Carpita, N.C.30
more..
-
24
-
-
34248561466
-
Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome
-
Jannoo N, Grivet L, Chantret N, Garsmeur O, Glaszmann JC, Arruda P, D'Hont A. Orthologous comparison in a gene-rich region among grasses reveals stability in the sugarcane polyploid genome. Plant J. 2007;50(4):574-85.
-
(2007)
Plant J
, vol.50
, Issue.4
, pp. 574-585
-
-
Jannoo, N.1
Grivet, L.2
Chantret, N.3
Garsmeur, O.4
Glaszmann, J.C.5
Arruda, P.6
D'Hont, A.7
-
25
-
-
70949098585
-
Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection
-
Wang ML, Zhu C, Barkley NA, Chen Z, Erpelding JE, Murray SC, Tuinstra MR, Tesso T, Pederson GA, Yu J. Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection. Theor Appl Genet. 2009;120:13-23.
-
(2009)
Theor Appl Genet
, vol.120
, pp. 13-23
-
-
Wang, M.L.1
Zhu, C.2
Barkley, N.A.3
Chen, Z.4
Erpelding, J.E.5
Murray, S.C.6
Tuinstra, M.R.7
Tesso, T.8
Pederson, G.A.9
Yu, J.10
-
26
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D. Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet. 2006;38:904-9.
-
(2006)
Nat Genet
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
27
-
-
84925463211
-
Genome wide association mapping of agro-morphological and disease resistance traits in sugarcane
-
Gouy M, Rousselle Y, Thong Chane A, Anglade A, Royaert S, Nibouche S, Costet L. Genome wide association mapping of agro-morphological and disease resistance traits in sugarcane. Euphytica. 2014;202:269-84.
-
(2014)
Euphytica
, vol.202
, pp. 269-284
-
-
Gouy, M.1
Rousselle, Y.2
Thong Chane, A.3
Anglade, A.4
Royaert, S.5
Nibouche, S.6
Costet, L.7
-
28
-
-
78649292420
-
Simultaneously accounting for population structure, genotype by environment interaction, and spatial variation in marker-trait associations in sugarcane
-
Wei X, Jackson P, Hermann S, Kilian A, Heller-Uszynska K, Deomano E. Simultaneously accounting for population structure, genotype by environment interaction, and spatial variation in marker-trait associations in sugarcane. Genome. 2010;53:973-81.
-
(2010)
Genome
, vol.53
, pp. 973-981
-
-
Wei, X.1
Jackson, P.2
Hermann, S.3
Kilian, A.4
Heller-Uszynska, K.5
Deomano, E.6
-
29
-
-
85019207604
-
Distribución de variedades comerciales de caña de azúcar en la provincia de Tucumán, R. Argentina. Relevamiento de la campaña 2013/2014
-
Ostengo S, Espinosa MA, Díaz JV, Chavanne ER, Costilla DD, Cuenya MI. Distribución de variedades comerciales de caña de azúcar en la provincia de Tucumán, R. Argentina. Relevamiento de la campaña 2013/2014. Revista Avance Agroindustrial. 2014;35(4):1.
-
(2014)
Revista Avance Agroindustrial
, vol.35
, Issue.4
, pp. 1
-
-
Ostengo, S.1
Espinosa, M.A.2
Díaz, J.V.3
Chavanne, E.R.4
Costilla, D.D.5
Cuenya, M.I.6
-
31
-
-
84978060276
-
-
In: Felipe LE, editor. Agronomía de la caña de azúcar. Argentina: El Graduado
-
Fogliata FA. Composición química y vegetativa. In: Felipe LE, editor. Agronomía de la caña de azúcar. Argentina: El Graduado; 1995. p. 163-209.
-
(1995)
Composición química y vegetativa
, pp. 163-209
-
-
Fogliata, F.A.1
-
32
-
-
84978145601
-
Comportamiento productivo y fitosanitario de TUC 97-8, una nueva variedad de caña de azúcar (Saccharum spp.) para Tucumán, R. Argentina
-
Cuenya MI, Ostengo S, García MB, Chavanne ER, Ahmed M, Díaz Romero C, Costilla DD, Espinosa MA. Comportamiento productivo y fitosanitario de TUC 97-8, una nueva variedad de caña de azúcar (Saccharum spp.) para Tucumán, R. Argentina. Rev ind agríc Tucumán. 2013;90(1):01-8.
-
(2013)
Rev ind agríc Tucumán
, vol.90
, Issue.1
, pp. 1-8
-
-
Cuenya, M.I.1
Ostengo, S.2
García, M.B.3
Chavanne, E.R.4
Ahmed, M.5
Díaz Romero, C.6
Costilla, D.D.7
Espinosa, M.A.8
-
33
-
-
84978145592
-
Comparative emergence and earlier growth of plant and ratoon cane, variety TUC CP 77-42, under different field temperature regimes
-
Proceeding XXV International Society of Sugar Cane Technologists Congress: 1-4 January 2005; Guatemala
-
Romero ER, Scandaliaris J, Olea I, Tonatto J, Sotomayor L: Comparative emergence and earlier growth of plant and ratoon cane, variety TUC CP 77-42, under different field temperature regimes. In Proceeding XXV International Society of Sugar Cane Technologists Congress: 1-4 January 2005; Guatemala; 2:168-75.
-
, vol.2
, pp. 168-175
-
-
Romero, E.R.1
Scandaliaris, J.2
Olea, I.3
Tonatto, J.4
Sotomayor, L.5
-
34
-
-
84856167115
-
Genome-wide association studies for agronomical traits in a worldwide spring barley collection
-
Pasam RK, Sharma R, Malosetti M, van Eeuwijk FA, Haseneyer G, Kilian B, Graner A. Genome-wide association studies for agronomical traits in a worldwide spring barley collection. BMC Plant Biol. 2012;12:16.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 16
-
-
Pasam, R.K.1
Sharma, R.2
Malosetti, M.3
Eeuwijk, F.A.4
Haseneyer, G.5
Kilian, B.6
Graner, A.7
-
35
-
-
84910661942
-
Genome-wide association mapping for kernel and malting quality traits using historical European barley records
-
Matthies IE, Malosetti M, Röder MS, van Eeuwijk F. Genome-wide association mapping for kernel and malting quality traits using historical European barley records. PLoS One. 2014;9:e110046.
-
(2014)
PLoS One
, vol.9
, pp. e110046
-
-
Matthies, I.E.1
Malosetti, M.2
Röder, M.S.3
Eeuwijk, F.4
-
36
-
-
84925500105
-
Multi-environment multi-QTL association mapping identifies disease resistance QTL in barley germplasm from Latin America
-
Gutiérrez L, Germán S, Pereyra S, Hayes PM, Pérez CA, Capettini F, Locatelli A, Berberian NM, Falconi EE, Estrada R, Fros D, Gonza V, Altamirano H, Huerta-Espino J, Neyra E, Orjeda G, Sandoval-Islas S, Singh R, Turkington K, Castro AJ. Multi-environment multi-QTL association mapping identifies disease resistance QTL in barley germplasm from Latin America. Theor Appl Genet. 2015;128:501-16.
-
(2015)
Theor Appl Genet
, vol.128
, pp. 501-516
-
-
Gutiérrez, L.1
Germán, S.2
Pereyra, S.3
Hayes, P.M.4
Pérez, C.A.5
Capettini, F.6
Locatelli, A.7
Berberian, N.M.8
Falconi, E.E.9
Estrada, R.10
Fros, D.11
Gonza, V.12
Altamirano, H.13
Huerta-Espino, J.14
Neyra, E.15
Orjeda, G.16
Sandoval-Islas, S.17
Singh, R.18
Turkington, K.19
Castro, A.J.20
more..
-
37
-
-
84874299005
-
Whole genome association mapping of Fusarium head blight resistance in European winter wheat (Triticum aestivum L.)
-
Kollers S, Rodemann B, Ling J, Korzun V, Ebmeyer E, Argillier O, Hinze M, Plieske J, Kulosa D, Ganal MW, Röder MS. Whole genome association mapping of Fusarium head blight resistance in European winter wheat (Triticum aestivum L.). PLoS One. 2013;8(2):e57500.
-
(2013)
PLoS One
, vol.8
, Issue.2
, pp. e57500
-
-
Kollers, S.1
Rodemann, B.2
Ling, J.3
Korzun, V.4
Ebmeyer, E.5
Argillier, O.6
Hinze, M.7
Plieske, J.8
Kulosa, D.9
Ganal, M.W.10
Röder, M.S.11
-
38
-
-
84883794556
-
Structural and temporal variation in genetic diversity of European spring two-row barley cultivars and association mapping of quantitative traits
-
Tondelli A, Xu X, Moragues M, Sharma R, Schnaithmann F, Ingvardsen C, Manninen O, Comadran J, Russell J, Waugh R, Schulman AH. Structural and temporal variation in genetic diversity of European spring two-row barley cultivars and association mapping of quantitative traits. Plant Genome. 2013;6(2):1.
-
(2013)
Plant Genome
, vol.6
, Issue.2
, pp. 1
-
-
Tondelli, A.1
Xu, X.2
Moragues, M.3
Sharma, R.4
Schnaithmann, F.5
Ingvardsen, C.6
Manninen, O.7
Comadran, J.8
Russell, J.9
Waugh, R.10
Schulman, A.H.11
-
40
-
-
84964818794
-
Estimating and Interpreting Heritability for Plant Breeding: An Update
-
In Plant Breeding Reviews. Edited by Janick J, Wiley J & Sons
-
Holland J, Nyquist W, Cervantes C: Estimating and Interpreting Heritability for Plant Breeding: An Update. In Plant Breeding Reviews. Edited by Janick J, Wiley J & Sons p. 2003: 9-112.
-
(2003)
, pp. 9-112
-
-
Holland, J.1
Nyquist, W.2
Cervantes, C.3
-
41
-
-
84896485983
-
-
Accessed 16 June 2016.
-
Plant DNA Extraction Protocol for DArT. http://www.diversityarrays.com/sites/default/files/pub/DArT_DNA_isolation.pdf. Accessed 16 June 2016.
-
Plant DNA Extraction Protocol for DArT
-
-
-
42
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
Nei M, Li W. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Nat Acad Sci USA. 1979;76:427-34.
-
(1979)
Proc Nat Acad Sci USA
, vol.76
, pp. 427-434
-
-
Nei, M.1
Li, W.2
-
43
-
-
84978046407
-
-
In: Hamon PS, Seguin M, Perrier X, Glaszmann JC, editors. Genetic diversity of cultivated tropical plants. Montpellier: Cirad
-
Perrier X, Flori A, Bonnot F. Methods of data analysis. In: Hamon PS, Seguin M, Perrier X, Glaszmann JC, editors. Genetic diversity of cultivated tropical plants. Montpellier: Cirad; 2003. p. 31-63.
-
(2003)
Methods of data analysis
, pp. 31-63
-
-
Perrier, X.1
Flori, A.2
Bonnot, F.3
-
44
-
-
84875442583
-
Genome wide markers as cofactors for precision mapping of quantitative trait loci
-
Bernardo R. Genome wide markers as cofactors for precision mapping of quantitative trait loci. Theor Appl Genet. 2013;126:999-1009.
-
(2013)
Theor Appl Genet
, vol.126
, pp. 999-1009
-
-
Bernardo, R.1
-
45
-
-
84899479461
-
A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markers
-
Aitken KS, McNeil MD, Hermann S, Bundock PC, Kilian A, Heller-Usznska K, Henry RJ, Li J. A comprehensive genetic map of sugarcane that provides enhanced map coverage and integrates high-throughput Diversity Array Technology (DArT) markers. BMC Genomics. 2014;15:152-63.
-
(2014)
BMC Genomics
, vol.15
, pp. 152-163
-
-
Aitken, K.S.1
McNeil, M.D.2
Hermann, S.3
Bundock, P.C.4
Kilian, A.5
Heller-Usznska, K.6
Henry, R.J.7
Li, J.8
-
47
-
-
79954585465
-
A comparison of association methods correcting for population stratification in case-control studies
-
418-412
-
Wu C, DeWan A, Hoh J, Wang Z. A comparison of association methods correcting for population stratification in case-control studies. Ann Hum Genet. 2011;75:418-2.
-
(2011)
Ann Hum Genet
, vol.75
-
-
Wu, C.1
DeWan, A.2
Hoh, J.3
Wang, Z.4
-
48
-
-
84934896393
-
Genome-Wide Association Mapping Identifies Disease-Resistance QTLs in Barley Germplasm From Latin America
-
In: Advance In Barley Breeding. Netherlands: Springer
-
Gutierrez L, Berberian N, Capettini F, Falcioni E, Fros D, Germán S, Hayes PM, Huerta-Espino J, Herrera S, Pereyra S, Pérez C, Sandoval-Islas S, Singh R, Castro AJ. Genome-Wide Association Mapping Identifies Disease-Resistance QTLs in Barley Germplasm From Latin America. In: Advance In Barley Breeding. Netherlands: Springer; 2013. p. 209-16.
-
(2013)
, pp. 209-216
-
-
Gutierrez, L.1
Berberian, N.2
Capettini, F.3
Falcioni, E.4
Fros, D.5
Germán, S.6
Hayes, P.M.7
Huerta-Espino, J.8
Herrera, S.9
Pereyra, S.10
Pérez, C.11
Sandoval-Islas, S.12
Singh, R.13
Castro, A.J.14
-
49
-
-
45149105926
-
Efficient control of population structure in model organism association mapping
-
Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E. Efficient control of population structure in model organism association mapping. Genetics. 2008;178:1709-23.
-
(2008)
Genetics
, vol.178
, pp. 1709-1723
-
-
Kang, H.M.1
Zaitlen, N.A.2
Wade, C.M.3
Kirby, A.4
Heckerman, D.5
Daly, M.J.6
Eskin, E.7
-
50
-
-
84866467273
-
GAPIT: genome association and prediction integrated tool
-
Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, Gore MA, Buckler ES, Zhang Z. GAPIT: genome association and prediction integrated tool. Bioinformatics. 2012;28:2397-9.
-
(2012)
Bioinformatics
, vol.28
, pp. 2397-2399
-
-
Lipka, A.E.1
Tian, F.2
Wang, Q.3
Peiffer, J.4
Li, M.5
Bradbury, P.J.6
Gore, M.A.7
Buckler, E.S.8
Zhang, Z.9
-
52
-
-
37249055906
-
A mixed model QTL analysis for multiple environment trial data using environmental covariables for QTLxE with an example in maize
-
Boer M, Wright D, Feng L, Podlich D, Luo L, Cooper M, Van Eeuwijk F. A mixed model QTL analysis for multiple environment trial data using environmental covariables for QTLxE with an example in maize. Genetics. 2007;177:1801-13.
-
(2007)
Genetics
, vol.177
, pp. 1801-1813
-
-
Boer, M.1
Wright, D.2
Feng, L.3
Podlich, D.4
Luo, L.5
Cooper, M.6
Eeuwijk, F.7
-
54
-
-
53849083757
-
Multi-environment QTL mixed models for drought stress adaptation in wheat
-
Mathews KL, Malosetti M, Chapman S, McIntyre L, Reynolds M, Shorter R, van Eeuwijk FA. Multi-environment QTL mixed models for drought stress adaptation in wheat. Theor Appl Genet. 2008;117:1077-91.
-
(2008)
Theor Appl Genet
, vol.117
, pp. 1077-1091
-
-
Mathews, K.L.1
Malosetti, M.2
Chapman, S.3
McIntyre, L.4
Reynolds, M.5
Shorter, R.6
Eeuwijk, F.A.7
-
55
-
-
0000992959
-
Plots of p-values to evaluate many tests simultaneously
-
Schweder T, Spjotvoll E. Plots of p-values to evaluate many tests simultaneously. Biometrika. 1982;69(3):493-502.
-
(1982)
Biometrika
, vol.69
, Issue.3
, pp. 493-502
-
-
Schweder, T.1
Spjotvoll, E.2
-
56
-
-
33748804424
-
A tutorial on statistical methods for population association studies
-
Balding DJ. A tutorial on statistical methods for population association studies. Nat Rev Genet. 2006;7:781-91.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 781-791
-
-
Balding, D.J.1
-
57
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215:403-10.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
58
-
-
33646455729
-
Association analysis as a strategy for improvement of quantitative traits in plants
-
Breseghello F, Sorrells ME. Association analysis as a strategy for improvement of quantitative traits in plants. Crop Sci. 2006;46:1323-30.
-
(2006)
Crop Sci
, vol.46
, pp. 1323-1330
-
-
Breseghello, F.1
Sorrells, M.E.2
-
59
-
-
62549133032
-
Linkage disequilibrium, genetic association mapping and gene localization in crop plants
-
Sorkheh K, Malysheva-otto LV, Wirthensohn MG, Tarkesh-esfahani S, Martínez-gómez P. Linkage disequilibrium, genetic association mapping and gene localization in crop plants. Genet Mol Biol. 2008;31:805-14.
-
(2008)
Genet Mol Biol
, vol.31
, pp. 805-814
-
-
Sorkheh, K.1
Malysheva-otto, L.V.2
Wirthensohn, M.G.3
Tarkesh-esfahani, S.4
Martínez-gómez, P.5
-
61
-
-
0001437588
-
Power of tests for QTL detection using replicated progenies derived from a diallel cross
-
Rebai A, Goffinet B. Power of tests for QTL detection using replicated progenies derived from a diallel cross. Theor Appl Genet. 1993;86:1014-22.
-
(1993)
Theor Appl Genet
, vol.86
, pp. 1014-1022
-
-
Rebai, A.1
Goffinet, B.2
-
62
-
-
0031833578
-
Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects
-
Melchinger AE, Utz HF, Schön CC. Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics. 1998;149:383-403.
-
(1998)
Genetics
, vol.149
, pp. 383-403
-
-
Melchinger, A.E.1
Utz, H.F.2
Schön, C.C.3
-
63
-
-
0025217786
-
Efficiency of marker-assisted selection in the improvement of quantitative traits
-
Lande R, Thompson R. Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics. 1990;124:743-56.
-
(1990)
Genetics
, vol.124
, pp. 743-756
-
-
Lande, R.1
Thompson, R.2
-
64
-
-
4043057169
-
What proportion of declared QTL in plants are false?
-
Bernardo R. What proportion of declared QTL in plants are false? Theor Appl Genet. 2004;109:419-24.
-
(2004)
Theor Appl Genet
, vol.109
, pp. 419-424
-
-
Bernardo, R.1
-
65
-
-
43349106548
-
Genome wide selection in oil palm: Increasing selection gain per unit time and cost with small populations
-
Wong CK, Bernardo R. Genome wide selection in oil palm: Increasing selection gain per unit time and cost with small populations. Theor Appl Genet. 2008;116(6):815-24.
-
(2008)
Theor Appl Genet
, vol.116
, Issue.6
, pp. 815-824
-
-
Wong, C.K.1
Bernardo, R.2
-
66
-
-
22844445483
-
Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.)
-
Andersen JR, Schrag T, Melchinger AE, Zein I, Lubberstedt T. Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.). Theor Appl Genet. 2005;111:206-17.
-
(2005)
Theor Appl Genet
, vol.111
, pp. 206-217
-
-
Andersen, J.R.1
Schrag, T.2
Melchinger, A.E.3
Zein, I.4
Lubberstedt, T.5
-
67
-
-
23944520412
-
An association mapping approach to identify flowering time genes in natural populations of Lolium perenne (L.)
-
Skot L, Humphreys MO, Armstead I, Heywood S, Skot KP, Sanderson R, Thomas ID, Chorlton KH, Hamilton NRS. An association mapping approach to identify flowering time genes in natural populations of Lolium perenne (L.). Mol Breed. 2005;15:233-45.
-
(2005)
Mol Breed
, vol.15
, pp. 233-245
-
-
Skot, L.1
Humphreys, M.O.2
Armstead, I.3
Heywood, S.4
Skot, K.P.5
Sanderson, R.6
Thomas, I.D.7
Chorlton, K.H.8
Hamilton, N.R.S.9
-
68
-
-
34547741261
-
Association of candidate genes with flowering time and water soluble carbohydrate content in Lolium perenne (L.)
-
Skot L, Humphreys J, Humphreys MO, Thorogood D, Gallagher J, Sanderson R, Armstead IP, Thomas ID. Association of candidate genes with flowering time and water soluble carbohydrate content in Lolium perenne (L.). Genetics. 2007;177:535-47.
-
(2007)
Genetics
, vol.177
, pp. 535-547
-
-
Skot, L.1
Humphreys, J.2
Humphreys, M.O.3
Thorogood, D.4
Gallagher, J.5
Sanderson, R.6
Armstead, I.P.7
Thomas, I.D.8
-
69
-
-
34250751416
-
The genetic architecture of shoot branching in Arabidopsis thaliana: a comparative assessment of candidate gene associations vs. quantitative trait locus mapping
-
Ehrenreich IM, Stafford PA, Purugganan MD. The genetic architecture of shoot branching in Arabidopsis thaliana: a comparative assessment of candidate gene associations vs. quantitative trait locus mapping. Genetics. 2007;176:1223-36.
-
(2007)
Genetics
, vol.176
, pp. 1223-1236
-
-
Ehrenreich, I.M.1
Stafford, P.A.2
Purugganan, M.D.3
-
70
-
-
34547398400
-
Conserved non-coding genomic sequences associated with a flowering-time quantitative trait locus in maize
-
Salvi S. Conserved non-coding genomic sequences associated with a flowering-time quantitative trait locus in maize. Proc Natl Acad Sci U S A. 2007;104:11376-81.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 11376-11381
-
-
Salvi, S.1
-
71
-
-
84925883907
-
Prospecting sugarcane resistance to Sugarcane yellow leaf virus by genome-wide association
-
Debibakas S, Rocher S, Garsmeur O, Toubi L, Roques D, D'Hont A, Hoarau J-Y, Daugrois JH. Prospecting sugarcane resistance to Sugarcane yellow leaf virus by genome-wide association. Theor Appl Genet. 2014;127:1719-32.
-
(2014)
Theor Appl Genet
, vol.127
, pp. 1719-1732
-
-
Debibakas, S.1
Rocher, S.2
Garsmeur, O.3
Toubi, L.4
Roques, D.5
D'Hont, A.6
Hoarau, J.-Y.7
Daugrois, J.H.8
-
72
-
-
85042808993
-
-
Association studies. In: Henry R, Kole C, editors. Genetics, genomics and breeding of sugarcane. USA: Science Publishers, Enfield
-
Huang E, Aitken KS, George A. Association studies. In: Henry R, Kole C, editors. Genetics, genomics and breeding of sugarcane. USA: Science Publishers, Enfield; 2010. p. 43-68.
-
(2010)
, pp. 43-68
-
-
Huang, E.1
Aitken, K.S.2
George, A.3
-
73
-
-
33751350347
-
Associations between DNA markers and resistance to diseases in sugarcane and effects of population substructure
-
Wei X, Jackson PA, McIntyre CL, Aitken KS, Croft B. Associations between DNA markers and resistance to diseases in sugarcane and effects of population substructure. Theor Appl Genet. 2006;114:155-64.
-
(2006)
Theor Appl Genet
, vol.114
, pp. 155-164
-
-
Wei, X.1
Jackson, P.A.2
McIntyre, C.L.3
Aitken, K.S.4
Croft, B.5
-
74
-
-
14744274375
-
An assessment of the genetic diversity within a collection of Saccharum spontaneum L. with RAPD-PCR
-
Pan YB, Burner DM, Legendre BL, Grisham MP, White WH. An assessment of the genetic diversity within a collection of Saccharum spontaneum L. with RAPD-PCR. Genet Resour Crop Evol. 2005;51:895-903.
-
(2005)
Genet Resour Crop Evol
, vol.51
, pp. 895-903
-
-
Pan, Y.B.1
Burner, D.M.2
Legendre, B.L.3
Grisham, M.P.4
White, W.H.5
-
75
-
-
33746439680
-
Genetic diversity among sugarcane clones using Target Region Amplification Polymorphism (TRAP) markers and pedigree relationships
-
PhD thesis. University of the Philippines, Agronomy and Environmental Management Department, Philippines
-
Arro JA: Genetic diversity among sugarcane clones using Target Region Amplification Polymorphism (TRAP) markers and pedigree relationships. PhD thesis. University of the Philippines, Agronomy and Environmental Management Department, Philippines; 2005.
-
(2005)
-
-
Arro, J.A.1
-
76
-
-
84861228155
-
Genetic diversity assessment and genotype identification in sugarcane based on DNA markers and morphological traits
-
Perera MF, Arias ME, Costilla D, Luque AC, García MB, Romero CD, Racedo J, Ostengo S, Filippone MP, Cuenya MI, Castagnaro AP. Genetic diversity assessment and genotype identification in sugarcane based on DNA markers and morphological traits. Euphytica. 2012;185:491-510.
-
(2012)
Euphytica
, vol.185
, pp. 491-510
-
-
Perera, M.F.1
Arias, M.E.2
Costilla, D.3
Luque, A.C.4
García, M.B.5
Romero, C.D.6
Racedo, J.7
Ostengo, S.8
Filippone, M.P.9
Cuenya, M.I.10
Castagnaro, A.P.11
-
77
-
-
24044536103
-
Resistance gene analogues in sugarcane and sorghum and their association with quantitative trait loci for rust resistance
-
McIntyre CL, Casu RE, Drenth J, Knight D, Whan VA, Croft BJ, Jordan DR, Manners JM. Resistance gene analogues in sugarcane and sorghum and their association with quantitative trait loci for rust resistance. Genome. 2005;48:391-400.
-
(2005)
Genome
, vol.48
, pp. 391-400
-
-
McIntyre, C.L.1
Casu, R.E.2
Drenth, J.3
Knight, D.4
Whan, V.A.5
Croft, B.J.6
Jordan, D.R.7
Manners, J.M.8
-
78
-
-
84865597911
-
Marker assisted breeding in sugarcane: a complex polyploid
-
PhD Thesis. University of Stellenbosch, Stellenbosch, South Africa
-
Butterfield MK: Marker assisted breeding in sugarcane: a complex polyploid. PhD Thesis. University of Stellenbosch, Stellenbosch, South Africa; 2007.
-
(2007)
-
-
Butterfield, M.K.1
-
79
-
-
79958143410
-
Integrating sorghum whole genome sequence information with a compendium of sorghum QTL studies reveals uneven distribution of QTL and of gene-rich regions with significant implications for crop improvement
-
Mace ES, Jordan DR. Integrating sorghum whole genome sequence information with a compendium of sorghum QTL studies reveals uneven distribution of QTL and of gene-rich regions with significant implications for crop improvement. Theor Appl Genet. 2011;123:169-91.
-
(2011)
Theor Appl Genet
, vol.123
, pp. 169-191
-
-
Mace, E.S.1
Jordan, D.R.2
-
80
-
-
77956824845
-
Genetic mapping of QTLs for sugar-related traits in a RIL population of Sorghum bicolor L
-
Shiringani AL, Frisch M, Friedt W. Genetic mapping of QTLs for sugar-related traits in a RIL population of Sorghum bicolor L. Moench Theor Appl Genet. 2010;121:323-36.
-
(2010)
Moench Theor Appl Genet
, vol.121
, pp. 323-336
-
-
Shiringani, A.L.1
Frisch, M.2
Friedt, W.3
-
81
-
-
50249110934
-
Identification of QTL for sugar-related traits in a sweet x grain sorghum (Sorghum bicolor L. Moench) recombinant inbred population
-
Ritter KB, Jordan DR, Chapman SC, Godwin ID, Mace ES, McIntyre CL. Identification of QTL for sugar-related traits in a sweet x grain sorghum (Sorghum bicolor L. Moench) recombinant inbred population. Mol Breed. 2008;22:367-84.
-
(2008)
Mol Breed
, vol.22
, pp. 367-384
-
-
Ritter, K.B.1
Jordan, D.R.2
Chapman, S.C.3
Godwin, I.D.4
Mace, E.S.5
McIntyre, C.L.6
-
82
-
-
57149115559
-
Genetic improvement of sorghum as a biofuel feedstock: I. QTL for stem sugar and grain nonstructural carbohydrates
-
Murray SC, Sharma A, Rooney WL, Klein PE, Mullet JE, Mitchell SE, Kresovich S. Genetic improvement of sorghum as a biofuel feedstock: I. QTL for stem sugar and grain nonstructural carbohydrates. Crop Sci. 2008;48:2165-79.
-
(2008)
Crop Sci
, vol.48
, pp. 2165-2179
-
-
Murray, S.C.1
Sharma, A.2
Rooney, W.L.3
Klein, P.E.4
Mullet, J.E.5
Mitchell, S.E.6
Kresovich, S.7
-
83
-
-
78650379468
-
High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane
-
Garsmeur O, Charron C, Bocs S, Jouffe V, Samain S, Couloux A, Droc G, Zini C, Glaszmann J-C, Van Sluys M-A, D'Hont A. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytol. 2011;189:629-42.
-
(2011)
New Phytol
, vol.189
, pp. 629-642
-
-
Garsmeur, O.1
Charron, C.2
Bocs, S.3
Jouffe, V.4
Samain, S.5
Couloux, A.6
Droc, G.7
Zini, C.8
Glaszmann, J.-C.9
Sluys, M.-A.10
D'Hont, A.11
-
84
-
-
84889005148
-
SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids
-
Garcia AAF, Mollinari M, Marconi TG, Serang OR, Silva RR, Vieira MLC, Vicentini R, Costa EA, Mancini MC, Garcia MOS, Pastina MM, Gazaffi R, Martins ERF, Dahmer N, Sforça DA, Silva CBC, Bundock P, Henry RJ, Souza GM, van Sluys M-A, Landell MGA, Carneiro MS, Vincentz MAG, Pinto LR, Vencovsky R, Souza AP. SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids. Sci Rep. 2013;3:3399.
-
(2013)
Sci Rep
, vol.3
, pp. 3399
-
-
Garcia, A.A.F.1
Mollinari, M.2
Marconi, T.G.3
Serang, O.R.4
Silva, R.R.5
Vieira, M.L.C.6
Vicentini, R.7
Costa, E.A.8
Mancini, M.C.9
Garcia, M.O.S.10
Pastina, M.M.11
Gazaffi, R.12
Martins, E.R.F.13
Dahmer, N.14
Sforça, D.A.15
Silva, C.B.C.16
Bundock, P.17
Henry, R.J.18
Souza, G.M.19
Sluys, M.-A.20
Landell, M.G.A.21
Carneiro, M.S.22
Vincentz, M.A.G.23
Pinto, L.R.24
Vencovsky, R.25
Souza, A.P.26
more..
-
85
-
-
0000169687
-
QTL analysis
-
In: Paterson AH, editor. Molecular dissection of complex traits. New York: CRC Press
-
Beavis WD, QTL analysis. Power, precision, and accuracy. In: Paterson AH, editor. Molecular dissection of complex traits. New York: CRC Press; 1998. p. 145-62.
-
(1998)
Power, precision, and accuracy
, pp. 145-162
-
-
Beavis, W.D.1
|