메뉴 건너뛰기




Volumn 63, Issue 4, 2016, Pages 511-522

Efficient expression of a heterologous gene in plants depends on the nucleotide composition of mRNA’s 5'-region

Author keywords

gene expression; mRNA 5' region; Nicotiana tabacum; reporter gene; transcription; transgenic plants; translation

Indexed keywords


EID: 84977123189     PISSN: 10214437     EISSN: None     Source Type: Journal    
DOI: 10.1134/S1021443716030158     Document Type: Article
Times cited : (8)

References (35)
  • 1
    • 70350491412 scopus 로고    scopus 로고
    • How eukaryotic genes are transcribed
    • COI: 1:CAS:528:DC%2BD1MXlslWhsr8%3D, PID: 19514890
    • Venters, B.J. and Pugh, B.F., How eukaryotic genes are transcribed, Crit. Rev. Biochem. Mol. Biol., 2009, vol. 44, pp. 117–141.
    • (2009) Crit. Rev. Biochem. Mol. Biol. , vol.44 , pp. 117-141
    • Venters, B.J.1    Pugh, B.F.2
  • 2
    • 77952962776 scopus 로고    scopus 로고
    • Analysis of five novel putative constitutive gene promoters in transgenic rice plants
    • COI: 1:CAS:528:DC%2BC3cXmslSqtb8%3D, PID: 20363869
    • Park, S.H., Yi, N.R., Kim, Y.S., Jeong, M.H., Bang, S.W., Choi, Y.D., and Kim, J.K., Analysis of five novel putative constitutive gene promoters in transgenic rice plants, J. Exp. Bot., 2010, vol. 61, pp. 2459–2467.
    • (2010) J. Exp. Bot. , vol.61 , pp. 2459-2467
    • Park, S.H.1    Yi, N.R.2    Kim, Y.S.3    Jeong, M.H.4    Bang, S.W.5    Choi, Y.D.6    Kim, J.K.7
  • 3
    • 77955085252 scopus 로고    scopus 로고
    • The impact of intragenic CpG content on gene expression
    • COI: 1:CAS:528:DC%2BC3cXotlCjtr8%3D, PID: 20203083
    • Bauer, A.P., Leikam, D., Krinner, S., Notka, F., Ludwig, C., Langst, G., and Wagner, R., The impact of intragenic CpG content on gene expression, Nucleic Acids Res., 2010, vol. 38, pp. 3891–3908.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3891-3908
    • Bauer, A.P.1    Leikam, D.2    Krinner, S.3    Notka, F.4    Ludwig, C.5    Langst, G.6    Wagner, R.7
  • 4
    • 79951500297 scopus 로고    scopus 로고
    • CpG island chromatin
    • COI: 1:CAS:528:DC%2BC3MXjs12ksLo%3D, PID: 20935486
    • Blackledge, N.P. and Klose, R.J., CpG island chromatin, Epigenetics, 2011, vol. 6, pp. 147–152.
    • (2011) Epigenetics , vol.6 , pp. 147-152
    • Blackledge, N.P.1    Klose, R.J.2
  • 5
    • 84861839326 scopus 로고    scopus 로고
    • CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression
    • COI: 1:CAS:528:DC%2BC38Xjs1Gqtbs%3D, PID: 22387149
    • Chatterjee, R. and Vinson, C., CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression, Biochim. Biophys. Acta, 2012, vol. 1819, pp. 763–770.
    • (2012) Biochim. Biophys. Acta , vol.1819 , pp. 763-770
    • Chatterjee, R.1    Vinson, C.2
  • 6
    • 84899014763 scopus 로고    scopus 로고
    • CpG domains downstream of TSSs promote high levels of gene expression
    • COI: 1:CAS:528:DC%2BC2cXls1Ojsbc%3D, PID: 24413563
    • Krinner, S., Heitzer, A.P., Diermeier, S.D., Obermeier, I., Langst, G., and Wagner, R., CpG domains downstream of TSSs promote high levels of gene expression, Nucleic Acids Res., 2014, vol. 42, pp. 3551–3564.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 3551-3564
    • Krinner, S.1    Heitzer, A.P.2    Diermeier, S.D.3    Obermeier, I.4    Langst, G.5    Wagner, R.6
  • 7
    • 84865193453 scopus 로고    scopus 로고
    • Characterization and evolution of 5' and 3' untranslated regions in eukaryotes
    • COI: 1:CAS:528:DC%2BC38XhtFOrsbrK, PID: 22846368
    • Liu, H., Yin, J., Xiao, M., Gao, C., Mason, A.S., Zhao, Z., Liu, Y., Li, J., and Fu, D., Characterization and evolution of 5' and 3' untranslated regions in eukaryotes, Gene, 2012, vol. 507, pp. 106–111.
    • (2012) Gene , vol.507 , pp. 106-111
    • Liu, H.1    Yin, J.2    Xiao, M.3    Gao, C.4    Mason, A.S.5    Zhao, Z.6    Liu, Y.7    Li, J.8    Fu, D.9
  • 8
    • 84868548651 scopus 로고    scopus 로고
    • A 28 nt long synthetic 50UTR (synJ) as an enhancer of transgene expression in dicotyledonous plants
    • COI: 1:CAS:528:DC%2BC3sXht1yrsrw%3D, PID: 23140609
    • Kanoria, S. and Burma, P.K., A 28 nt long synthetic 50UTR (synJ) as an enhancer of transgene expression in dicotyledonous plants, BMC Biotechnol., 2012, vol. 12, p. 85.
    • (2012) BMC Biotechnol. , vol.12 , pp. 85
    • Kanoria, S.1    Burma, P.K.2
  • 9
    • 84860197135 scopus 로고    scopus 로고
    • Using translational enhancers to increase transgene expression in Drosophila
    • COI: 1:CAS:528:DC%2BC38Xmslyjuro%3D, PID: 22493255
    • Pfeiffer, B.D., Truman, J.W., and Rubin, G.M., Using translational enhancers to increase transgene expression in Drosophila, Proc. Natl. Acad. Sci. USA, 2012, vol. 109, pp. 6626–6631.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 6626-6631
    • Pfeiffer, B.D.1    Truman, J.W.2    Rubin, G.M.3
  • 10
    • 77954540320 scopus 로고    scopus 로고
    • The 5’ untranslated region of the VR-ACS1 mRNA acts as a strong translational enhancer in plants
    • COI: 1:CAS:528:DC%2BC3cXos1GhtLg%3D, PID: 19816782
    • Wever, W., McCallum, E.J., Chakravorty, D., Cazzonelli, C.I., and Botella, J.R., The 5’ untranslated region of the VR-ACS1 mRNA acts as a strong translational enhancer in plants, Transgenic Res., 2010, vol. 19, pp. 667–674.
    • (2010) Transgenic Res. , vol.19 , pp. 667-674
    • Wever, W.1    McCallum, E.J.2    Chakravorty, D.3    Cazzonelli, C.I.4    Botella, J.R.5
  • 11
    • 84870472886 scopus 로고    scopus 로고
    • The 5' untranslated region of the soybean cytosolic glutamine synthetase β 1 gene contains prokaryotic translation initiation signals and acts as a translational enhancer in plants
    • COI: 1:CAS:528:DC%2BC38XhslWktLnK, PID: 23080263
    • Ortega, J.L., Wilson, O.L., and Sengupta-Gopalan, C., The 5' untranslated region of the soybean cytosolic glutamine synthetase β 1 gene contains prokaryotic translation initiation signals and acts as a translational enhancer in plants, Mol. Genet. Genomics, 2012, vol. 287, pp. 881–893.
    • (2012) Mol. Genet. Genomics , vol.287 , pp. 881-893
    • Ortega, J.L.1    Wilson, O.L.2    Sengupta-Gopalan, C.3
  • 12
    • 84891797628 scopus 로고    scopus 로고
    • The immediate upstream region of the 5'-UTR from the AUG start codon has a pronounced effect on the translational efficiency in Arabidopsis thaliana
    • COI: 1:CAS:528:DC%2BC2cXkvFKq, PID: 24084084
    • Kim, Y., Lee, G., Jeon, E., Sohn, E., Lee, Y., Kang, H., Lee, D., Kim, D.H., and Hwang, I., The immediate upstream region of the 5'-UTR from the AUG start codon has a pronounced effect on the translational efficiency in Arabidopsis thaliana, Nucleic Acids Res., 2014, vol. 42, pp. 485–498.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 485-498
    • Kim, Y.1    Lee, G.2    Jeon, E.3    Sohn, E.4    Lee, Y.5    Kang, H.6    Lee, D.7    Kim, D.H.8    Hwang, I.9
  • 13
    • 84885944701 scopus 로고    scopus 로고
    • Genetic engineering of novel bluer-colored chrysanthemums produced by accumulation of delphinidinbased anthocyanins
    • COI: 1:CAS:528:DC%2BC3sXhs1SmtbfO, PID: 23926063
    • Noda, N., Aida, R., Kishimoto, S., Ishiguro, K., Fukuchi- Mizutani, M., Tanaka, Y., and Ohmiya, A., Genetic engineering of novel bluer-colored chrysanthemums produced by accumulation of delphinidinbased anthocyanins, Plant Cell Physiol., 2013, vol. 54, pp. 1684–1695.
    • (2013) Plant Cell Physiol. , vol.54 , pp. 1684-1695
    • Noda, N.1    Aida, R.2    Kishimoto, S.3    Ishiguro, K.F.-4    Mizutani, M.5    Tanaka, Y.6    Ohmiya, A.7
  • 14
    • 13944270653 scopus 로고    scopus 로고
    • mRNA sequence features that contribute to translational regulation in Arabidopsis
    • COI: 1:CAS:528:DC%2BD2MXitVyqu78%3D, PID: 15716313
    • Kawaguchi, R. and Bailey-Serres, J., mRNA sequence features that contribute to translational regulation in Arabidopsis, Nucleic Acids Res., 2005, vol. 33, pp. 955–965.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 955-965
    • Kawaguchi, R.1    Bailey-Serres, J.2
  • 15
    • 34347326163 scopus 로고    scopus 로고
    • Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 5' untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated
    • COI: 1:CAS:528:DC%2BD2sXnsVWrsL0%3D, PID: 17470553
    • Dmitriev, S.E., Andreev, D.E., Terenin, I.M., Olovnikov, I.A., Prassolov, V.S., Merrick, W.C., and Shatsky, I.N., Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 5' untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated, Mol. Cell. Biol., 2007, vol. 27, pp. 4685–4697.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 4685-4697
    • Dmitriev, S.E.1    Andreev, D.E.2    Terenin, I.M.3    Olovnikov, I.A.4    Prassolov, V.S.5    Merrick, W.C.6    Shatsky, I.N.7
  • 16
    • 52449118496 scopus 로고    scopus 로고
    • Translation initiation element specific to mRNAs with very short 5'UTR that also regulates transcription
    • Elfakess, R. and Dikstein, R.A., Translation initiation element specific to mRNAs with very short 5'UTR that also regulates transcription, PLoS One, 2008, vol. 3: e3094.
    • (2008) PLoS One , vol.3
    • Elfakess, R.1    Dikstein, R.A.2
  • 17
    • 84862229118 scopus 로고    scopus 로고
    • 5'-UTR RNA Gquadruplexes: translation regulation and targeting e9670
    • COI: 1:CAS:528:DC%2BC38XotlCntLs%3D, PID: 22351747
    • Bugaut, A. and Balasubramanian, S., 5'-UTR RNA Gquadruplexes: translation regulation and targeting e9670, Nucleic Acids Res., 2012, vol. 40, pp. 4727–4741.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 4727-4741
    • Bugaut, A.1    Balasubramanian, S.2
  • 18
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • COI: 1:CAS:528:DC%2BD2cXisF2ks7w%3D, PID: 15034147
    • Edgar, R.C., MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Res., 2004, vol. 32, pp. 1792–1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 19
    • 0034199476 scopus 로고    scopus 로고
    • The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences
    • COI: 1:CAS:528:DC%2BD3cXktF2ks7w%3D, PID: 10868275
    • Stothard, P., The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences, BioTechniques, 2000, vol. 28, pp. 1102–1104.
    • (2000) BioTechniques , vol.28 , pp. 1102-1104
    • Stothard, P.1
  • 20
    • 67849086863 scopus 로고    scopus 로고
    • Sato, K., Hamada, M., Asai, K., and Mituyama, T., CENTROIDFOLD: a web server for RNA secondary structure prediction, vol. 37, Web Server W277–W280
    • Sato, K., Hamada, M., Asai, K., and Mituyama, T., CENTROIDFOLD: a web server for RNA secondary structure prediction, Nucleic Acids Res., 2009, vol. 37, Web Server W277–W280.
    • (2009) Nucleic Acids Res.
  • 23
  • 24
    • 77955981491 scopus 로고    scopus 로고
    • Multiplex PCR assay for detection of recombinant genes encoding fatty acid desaturases fused with lichenase reporter protein in GM plants
    • COI: 1:CAS:528:DC%2BC3cXlvVKgs7o%3D, PID: 20461503
    • Berdichevets, I.N., Shimshilashvili, H.R., Gerasymenko, I.M., Sindarovska, Y.R., Sheludko, Y.V., and Goldenkova-Pavlova, I.V., Multiplex PCR assay for detection of recombinant genes encoding fatty acid desaturases fused with lichenase reporter protein in GM plants, Anal. Bioanal. Chem., 2010, vol. 397, pp. 2289–2293.
    • (2010) Anal. Bioanal. Chem. , vol.397 , pp. 2289-2293
    • Berdichevets, I.N.1    Shimshilashvili, H.R.2    Gerasymenko, I.M.3    Sindarovska, Y.R.4    Sheludko, Y.V.5    Goldenkova-Pavlova, I.V.6
  • 25
    • 77957034698 scopus 로고
    • Methods for measuring cellulase activities
    • COI: 1:CAS:528:DyaL1cXmtVOisrk%3D
    • Wood, T.M. and Bhat, K.M., Methods for measuring cellulase activities, Methods Enzymol., 1988, vol. 160, pp. 87–112.
    • (1988) Methods Enzymol. , vol.160 , pp. 87-112
    • Wood, T.M.1    Bhat, K.M.2
  • 26
    • 0017184389 scopus 로고
    • Rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding
    • COI: 1:CAS:528:DyaE28XksVehtrY%3D, PID: 942051
    • Bradford, M.A., Rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding, Anal. Biochem., 1976, vol. 72, pp. 248–254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.A.1
  • 27
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • COI: 1:CAS:528:DC%2BD3MXlsFags7s%3D, PID: 5432063
    • Laemmli, U.K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature, 1970, vol. 227, pp. 680–685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 28
    • 0024414469 scopus 로고
    • Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs
    • COI: 1:CAS:528:DyaK3cXislGj, PID: 2601712
    • Kozak, M., Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs, Mol. Cell. Biol., 1989, vol. 9, pp. 5134–5142.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 5134-5142
    • Kozak, M.1
  • 29
    • 84922574242 scopus 로고    scopus 로고
    • G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation
    • PID: 25527104
    • Andorf, C.M., Kopylov, M., Dobbs, D., Koch, K.E., Stroupe, M.E., Lawrence, C.J., and Bass, H.W., G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation, J. Genet. Genomics, 2014, vol. 41, pp. 627–647.
    • (2014) J. Genet. Genomics , vol.41 , pp. 627-647
    • Andorf, C.M.1    Kopylov, M.2    Dobbs, D.3    Koch, K.E.4    Stroupe, M.E.5    Lawrence, C.J.6    Bass, H.W.7
  • 30
    • 84875993007 scopus 로고    scopus 로고
    • A computational and experimental approach reveals that the 5'-proximal region of the 5'-UTR has a cis-regulatory signature responsible for heat stress-regulated mRA translation in Arabidopsis
    • COI: 1:CAS:528:DC%2BC3sXlsV2msLc%3D, PID: 23314753
    • Matsuura, H., Takenami, S., Kubo, Y., Ueda, K., Ueda, A., Yamaguchi, M., Hirata, K., Demura, T., Kanaya, S., and Kato, K., A computational and experimental approach reveals that the 5'-proximal region of the 5'-UTR has a cis-regulatory signature responsible for heat stress-regulated mRA translation in Arabidopsis, Plant Cell Physiol., 2013, vol. 54, pp. 474–483.
    • (2013) Plant Cell Physiol. , vol.54 , pp. 474-483
    • Matsuura, H.1    Takenami, S.2    Kubo, Y.3    Ueda, K.4    Ueda, A.5    Yamaguchi, M.6    Hirata, K.7    Demura, T.8    Kanaya, S.9    Kato, K.10
  • 31
    • 84924049098 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in maize (Zea mays)
    • Wang, P., Xia, H., Zhang, Y., Zhao, S., Zhao, C., Hou, L., Li, C., Li, A., Ma, C., and Wang, X., Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in maize (Zea mays), BMC Genomics, 2015, vol. 6. p. 21. doi 10.1186/s12864-014-1204-7
    • (2015) BMC Genomics , vol.6 , pp. 21
    • Wang, P.1    Xia, H.2    Zhang, Y.3    Zhao, S.4    Zhao, C.5    Hou, L.6    Li, C.7    Li, A.8    Ma, C.9    Wang, X.10
  • 33
    • 84866128954 scopus 로고    scopus 로고
    • Transgenerational maintenance of transgene body CG but not CHG and CHH methylation
    • COI: 1:CAS:528:DC%2BC3sXhs1aqs7g%3D, PID: 22863736
    • Dalakouras, A., Dadami, E., Zwiebel, M., Krczal, G., and Wassenegger, M., Transgenerational maintenance of transgene body CG but not CHG and CHH methylation, Epigenetics, 2012, vol. 7, pp. 1071–1078.
    • (2012) Epigenetics , vol.7 , pp. 1071-1078
    • Dalakouras, A.1    Dadami, E.2    Zwiebel, M.3    Krczal, G.4    Wassenegger, M.5
  • 34
    • 84858968754 scopus 로고    scopus 로고
    • Mosaic patterns of transgene expression in plants
    • COI: 1:CAS:528:DC%2BC38XksFantbk%3D
    • Marenkova, T.V., Loginova, D.B., and Deineko, E.V., Mosaic patterns of transgene expression in plants, Russ. J. Genetics, 2012, vol. 48, pp. 249–260.
    • (2012) Russ. J. Genetics , vol.48 , pp. 249-260
    • Marenkova, T.V.1    Loginova, D.B.2    Deineko, E.V.3
  • 35
    • 84929330114 scopus 로고    scopus 로고
    • State of research in the field of the creation of plant vaccines for veterinary use
    • COI: 1:CAS:528:DC%2BC2MXmtVGhug%3D%3D
    • Permyakova, N.V., Uvarova, E.A., and Deineko, E.V., State of research in the field of the creation of plant vaccines for veterinary use, Russ. J. Plant Physiol., 2015, vol. 62, pp. 23–38.
    • (2015) Russ. J. Plant Physiol. , vol.62 , pp. 23-38
    • Permyakova, N.V.1    Uvarova, E.A.2    Deineko, E.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.