-
1
-
-
33646925084
-
Protein folding pathways studied by pulsed- and native-state hydrogen exchange
-
Bai, Y. (2006) Protein folding pathways studied by pulsed- and native-state hydrogen exchange. Chem. Rev., 106, 1757-1768.
-
(2006)
Chem. Rev.
, vol.106
, pp. 1757-1768
-
-
Bai, Y.1
-
2
-
-
0031815749
-
How do small single-domain proteins fold?
-
Jackson, S.E. (1998) How do small single-domain proteins fold? Fold Des., 3, R81-R91.
-
(1998)
Fold Des.
, vol.3
, pp. R81-R91
-
-
Jackson, S.E.1
-
3
-
-
79951887389
-
Hydrogen exchange mass spectrometry for studying protein structure and dynamics
-
Konermann, L., Pan, J. and Liu, Y.H. (2011) Hydrogen exchange mass spectrometry for studying protein structure and dynamics. Chem. Soc. Rev., 40, 1224-1234.
-
(2011)
Chem. Soc. Rev.
, vol.40
, pp. 1224-1234
-
-
Konermann, L.1
Pan, J.2
Liu, Y.H.3
-
4
-
-
80053564440
-
Protein folding mechanisms studied by pulsed oxidative labeling and mass spectrometry
-
Konermann, L., Pan, Y. and Stocks, B.B. (2011) Protein folding mechanisms studied by pulsed oxidative labeling and mass spectrometry. Curr. Opin. Struct. Biol., 21, 634-640.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 634-640
-
-
Konermann, L.1
Pan, Y.2
Stocks, B.B.3
-
5
-
-
77955671120
-
Mass spectrometry combined with oxidative labeling for exploring protein structure and folding
-
Konermann, L., Stocks, B.B., Pan, Y. and Tong, X. (2010) Mass spectrometry combined with oxidative labeling for exploring protein structure and folding. Mass Spectrom. Rev., 29, 651-667.
-
(2010)
Mass Spectrom. Rev.
, vol.29
, pp. 651-667
-
-
Konermann, L.1
Stocks, B.B.2
Pan, Y.3
Tong, X.4
-
6
-
-
0344603844
-
The hydrogen exchange core and protein folding
-
Li, R. and Woodward, C. (1999) The hydrogen exchange core and protein folding. Protein Sci., 8, 1571-1590.
-
(1999)
Protein Sci.
, vol.8
, pp. 1571-1590
-
-
Li, R.1
Woodward, C.2
-
7
-
-
0026511656
-
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht, A.R., Matouschek, A. and Serrano, L. (1992) The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding. J. Mol. Biol., 224, 771-782.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
8
-
-
77952730001
-
Insights into protein folding mechanisms from large scale analysis of mutational effects
-
Naganathan, A.N. and Munoz, V. (2010) Insights into protein folding mechanisms from large scale analysis of mutational effects. Proc. Natl. Acad. Sci. U.S.A., 107, 8611-8616.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 8611-8616
-
-
Naganathan, A.N.1
Munoz, V.2
-
9
-
-
0013994339
-
Hydrogen exchange in proteins
-
Hvidt, A. and Nielsen, S.O. (1966) Hydrogen exchange in proteins. Adv. Protein Chem., 21, 287-386.
-
(1966)
Adv. Protein Chem.
, vol.21
, pp. 287-386
-
-
Hvidt, A.1
Nielsen, S.O.2
-
10
-
-
84892698385
-
Ultrafast hydrogen exchange reveals specific structural events during the initial stages of folding of cytochrome c
-
Fazelinia, H., Xu, M., Cheng, H. and Roder, H. (2014) Ultrafast hydrogen exchange reveals specific structural events during the initial stages of folding of cytochrome c. J. Am. Chem. Soc., 136, 733-740.
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 733-740
-
-
Fazelinia, H.1
Xu, M.2
Cheng, H.3
Roder, H.4
-
11
-
-
0022965254
-
Protein folding kinetics by combined use of rapid mixing techniques And NMR observation of individual amide protons
-
Roder, H. and Wuthrich, K. (1986) Protein folding kinetics by combined use of rapid mixing techniques and NMR observation of individual amide protons. Proteins, 1, 34-42.
-
(1986)
Proteins
, vol.1
, pp. 34-42
-
-
Roder, H.1
Wuthrich, K.2
-
12
-
-
3342993181
-
Hydrogen exchange methods to study protein folding
-
Krishna, M.M., Hoang, L., Lin, Y. and Englander, S.W. (2004) Hydrogen exchange methods to study protein folding. Methods, 34, 51-64.
-
(2004)
Methods
, vol.34
, pp. 51-64
-
-
Krishna, M.M.1
Hoang, L.2
Lin, Y.3
Englander, S.W.4
-
13
-
-
0029093363
-
Local perturbations by ligand binding of hydrogen deuterium exchange kinetics in a four-helix bundle protein, acyl coenzyme A binding protein (ACBP)
-
Kragelund, B.B., Knudsen, J. and Poulsen, F.M. (1995) Local perturbations by ligand binding of hydrogen deuterium exchange kinetics in a four-helix bundle protein, acyl coenzyme A binding protein (ACBP). J. Mol. Biol., 250, 695-706.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 695-706
-
-
Kragelund, B.B.1
Knudsen, J.2
Poulsen, F.M.3
-
14
-
-
84868588636
-
Mapping the conformational stability of maltose binding protein at the residue scale using nuclear magnetic resonance hydrogen exchange experiments
-
Merstorf, C., Maciejak, O., Mathe, J., Pastoriza-Gallego, M., Thiebot, B., Clement, M.J., Pelta, J., Auvray, L., Curmi, P.A. and Savarin, P. (2012) Mapping the conformational stability of maltose binding protein at the residue scale using nuclear magnetic resonance hydrogen exchange experiments. Biochemistry, 51, 8919-8930.
-
(2012)
Biochemistry
, vol.51
, pp. 8919-8930
-
-
Merstorf, C.1
Maciejak, O.2
Mathe, J.3
Pastoriza-Gallego, M.4
Thiebot, B.5
Clement, M.J.6
Pelta, J.7
Auvray, L.8
Curmi, P.A.9
Savarin, P.10
-
15
-
-
0030726758
-
Populating the equilibrium molten globule state of apomyoglobin under conditions suitable for structural characterization by NMR
-
Eliezer, D., Jennings, P.A., Dyson, H.J. and Wright, P.E. (1997) Populating the equilibrium molten globule state of apomyoglobin under conditions suitable for structural characterization by NMR. FEBS Lett., 417, 92-96.
-
(1997)
FEBS Lett.
, vol.417
, pp. 92-96
-
-
Eliezer, D.1
Jennings, P.A.2
Dyson, H.J.3
Wright, P.E.4
-
16
-
-
0025186451
-
Structural characterization of a partly folded apomyoglobin intermediate
-
Hughson, F.M., Wright, P.E. and Baldwin, R.L. (1990) Structural characterization of a partly folded apomyoglobin intermediate. Science, 249, 1544-1548.
-
(1990)
Science
, vol.249
, pp. 1544-1548
-
-
Hughson, F.M.1
Wright, P.E.2
Baldwin, R.L.3
-
17
-
-
42249114496
-
The kinetic and equilibrium molten globule intermediates of apoleghemoglobin differ in structure
-
Nishimura, C., Dyson, H.J. and Wright, P.E. (2008) The kinetic and equilibrium molten globule intermediates of apoleghemoglobin differ in structure. J Mol Biol, 378, 715-725.
-
(2008)
J Mol Biol
, vol.378
, pp. 715-725
-
-
Nishimura, C.1
Dyson, H.J.2
Wright, P.E.3
-
18
-
-
0031731890
-
Characterization of a folding intermediate from HIV-1 ribonuclease H
-
Kern, G., Handel, T. and Marqusee, S. (1998) Characterization of a folding intermediate from HIV-1 ribonuclease H. Protein Sci., 7, 2164-2174.
-
(1998)
Protein Sci.
, vol.7
, pp. 2164-2174
-
-
Kern, G.1
Handel, T.2
Marqusee, S.3
-
19
-
-
77958068942
-
Characterizing short-lived protein folding intermediates by top-down hydrogen exchange mass spectrometry
-
Pan, J., Han, J., Borchers, C.H. and Konermann, L. (2010) Characterizing short-lived protein folding intermediates by top-down hydrogen exchange mass spectrometry. Anal. Chem., 82, 8591-8597.
-
(2010)
Anal. Chem.
, vol.82
, pp. 8591-8597
-
-
Pan, J.1
Han, J.2
Borchers, C.H.3
Konermann, L.4
-
20
-
-
0035910279
-
A kinetic folding intermediate probed by native state hydrogen exchange
-
Parker, M.J. and Marqusee, S. (2001) A kinetic folding intermediate probed by native state hydrogen exchange. J. Mol. Biol., 305, 593-602.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 593-602
-
-
Parker, M.J.1
Marqusee, S.2
-
21
-
-
67749108049
-
Detection of early unfolding events in a dimeric protein by amide proton exchange and native electrospray mass spectrometry
-
Mobley, J.A. and Poliakov, A. (2009) Detection of early unfolding events in a dimeric protein by amide proton exchange and native electrospray mass spectrometry. Protein Sci., 18, 1620-1627.
-
(2009)
Protein Sci.
, vol.18
, pp. 1620-1627
-
-
Mobley, J.A.1
Poliakov, A.2
-
22
-
-
33644663381
-
Folding kinetics of the S100A11 protein dimer studied by time-resolved electrospray mass spectrometry and pulsed hydrogen-deuterium exchange
-
Pan, J., Rintala-Dempsey, A.C., Li, Y., Shaw, G.S. and Konermann, L. (2006) Folding kinetics of the S100A11 protein dimer studied by time-resolved electrospray mass spectrometry and pulsed hydrogen-deuterium exchange. Biochemistry, 45, 3005-3013.
-
(2006)
Biochemistry
, vol.45
, pp. 3005-3013
-
-
Pan, J.1
Rintala-Dempsey, A.C.2
Li, Y.3
Shaw, G.S.4
Konermann, L.5
-
23
-
-
33748774141
-
The folding energy landscape of the dimerization domain of Escherichia coli trp repressor: A joint experimental and theoretical investigation
-
Simler, B.R., Levy, Y., Onuchic, J.N. and Matthews, C.R. (2006) The folding energy landscape of the dimerization domain of Escherichia coli Trp repressor: a joint experimental and theoretical investigation. J. Mol. Biol., 363, 262-278.
-
(2006)
J. Mol. Biol.
, vol.363
, pp. 262-278
-
-
Simler, B.R.1
Levy, Y.2
Onuchic, J.N.3
Matthews, C.R.4
-
24
-
-
0030840017
-
Microsecond protein folding kinetics from native-state hydrogen exchange
-
Arrington, C.B. and Robertson, A.D. (1997) Microsecond protein folding kinetics from native-state hydrogen exchange. Biochemistry, 36, 8686-8691.
-
(1997)
Biochemistry
, vol.36
, pp. 8686-8691
-
-
Arrington, C.B.1
Robertson, A.D.2
-
26
-
-
52949091532
-
Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR
-
Uzawa, T., Nishimura, C., Akiyama, S., Ishimori, K., Takahashi, S., Dyson, H.J. and Wright, P.E. (2008) Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR. Proc. Natl. Acad. Sci. U.S.A., 105, 13859-13864.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 13859-13864
-
-
Uzawa, T.1
Nishimura, C.2
Akiyama, S.3
Ishimori, K.4
Takahashi, S.5
Dyson, H.J.6
Wright, P.E.7
-
27
-
-
0036135965
-
Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange
-
Walkenhorst, W.F., Edwards, J.A., Markley, J.L. and Roder, H. (2002) Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange. Protein Sci., 11, 82-91.
-
(2002)
Protein Sci.
, vol.11
, pp. 82-91
-
-
Walkenhorst, W.F.1
Edwards, J.A.2
Markley, J.L.3
Roder, H.4
-
28
-
-
84857361862
-
Folding of an all-helical Greek-Key protein monitored by quenched-flow hydrogen-deuterium exchange and NMR spectroscopy
-
Greene, L.H., Li, H., Zhong, J., Zhao, G. and Wilson, K. (2012) Folding of an all-helical Greek-key protein monitored by quenched-flow hydrogen-deuterium exchange and NMR spectroscopy. Eur. Biophys. J., 41, 41-51.
-
(2012)
Eur. Biophys. J.
, vol.41
, pp. 41-51
-
-
Greene, L.H.1
Li, H.2
Zhong, J.3
Zhao, G.4
Wilson, K.5
-
29
-
-
33644938880
-
Refolding of a small all beta-sheet protein proceeds with accumulation of kinetic intermediates
-
Hsieh, H.C., Kumar, T.K., Sivaraman, T. and Yu, C. (2006) Refolding of a small all beta-sheet protein proceeds with accumulation of kinetic intermediates. Arch. Biochem. Biophys., 447, 147-154.
-
(2006)
Arch. Biochem. Biophys.
, vol.447
, pp. 147-154
-
-
Hsieh, H.C.1
Kumar, T.K.2
Sivaraman, T.3
Yu, C.4
-
30
-
-
0027190613
-
Kinetics of folding of the all-beta sheet protein Interleukin-1 beta
-
Varley, P., Gronenborn, A.M., Christensen, H., Wingfield, P.T., Pain, R.H. and Clore, G.M. (1993) Kinetics of folding of the all-beta sheet protein interleukin-1 beta. Science, 260, 1110-1113.
-
(1993)
Science
, vol.260
, pp. 1110-1113
-
-
Varley, P.1
Gronenborn, A.M.2
Christensen, H.3
Wingfield, P.T.4
Pain, R.H.5
Clore, G.M.6
-
31
-
-
33845796109
-
The folding pathway of T4 lysozyme: An on-pathway hidden folding intermediate
-
Kato, H., Vu, N.D., Feng, H., Zhou, Z. and Bai, Y. (2007) The folding pathway of T4 lysozyme: an on-pathway hidden folding intermediate. J. Mol. Biol., 365, 881-891.
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 881-891
-
-
Kato, H.1
Vu, N.D.2
Feng, H.3
Zhou, Z.4
Bai, Y.5
-
32
-
-
0020855355
-
Hydrogen exchange and structural dynamics of proteins and nucleic acids
-
Englander, S.W. and Kallenbach, N.R. (1983) Hydrogen exchange and structural dynamics of proteins and nucleic acids. Q. Rev. Biophys., 16, 521-655.
-
(1983)
Q. Rev. Biophys.
, vol.16
, pp. 521-655
-
-
Englander, S.W.1
Kallenbach, N.R.2
-
33
-
-
0030612609
-
Hydrogen exchange: The modern legacy of linderstrom-lang
-
Englander, S.W., Mayne, L., Bai, Y. and Sosnick, T.R. (1997) Hydrogen exchange: the modern legacy of Linderstrom-Lang. Protein Sci., 6, 1101-1109.
-
(1997)
Protein Sci.
, vol.6
, pp. 1101-1109
-
-
Englander, S.W.1
Mayne, L.2
Bai, Y.3
Sosnick, T.R.4
-
34
-
-
0023705432
-
Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR
-
Roder, H., Elove, G.A. and Englander, S.W. (1988) Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR. Nature, 335, 700-704.
-
(1988)
Nature
, vol.335
, pp. 700-704
-
-
Roder, H.1
Elove, G.A.2
Englander, S.W.3
-
35
-
-
0030780768
-
Kinetics of cytochrome c folding examined by hydrogen exchange and mass spectrometry
-
Yang, H. and Smith, D.L. (1997) Kinetics of cytochrome c folding examined by hydrogen exchange and mass spectrometry. Biochemistry, 36, 14992-14999.
-
(1997)
Biochemistry
, vol.36
, pp. 14992-14999
-
-
Yang, H.1
Smith, D.L.2
-
36
-
-
84946069451
-
UniProt: A hub for protein information
-
UniProt, C. (2015) UniProt: a hub for protein information. Nucleic Acids Res., 43, D204-D212.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D204-D212
-
-
UniProt, C.1
-
37
-
-
84929576044
-
The protein data bank archive as an open data resource
-
Berman, H.M., Kleywegt, G.J., Nakamura, H. and Markley, J.L. (2014) The Protein Data Bank archive as an open data resource. J. Comput. Aided Mol. Des., 28, 1009-1014.
-
(2014)
J. Comput. Aided Mol. Des.
, vol.28
, pp. 1009-1014
-
-
Berman, H.M.1
Kleywegt, G.J.2
Nakamura, H.3
Markley, J.L.4
-
38
-
-
84891774970
-
PDBe: Protein data bank in Europe
-
Gutmanas, A., Alhroub, Y., Battle, G.M., Berrisford, J.M., Bochet, E., Conroy, M.J., Dana, J.M., Fernandez Montecelo, M.A., van Ginkel, G., Gore, S.P. et al. (2014) PDBe: Protein Data Bank in Europe. Nucleic Acids Res., 42, D285-D291.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D285-D291
-
-
Gutmanas, A.1
Alhroub, Y.2
Battle, G.M.3
Berrisford, J.M.4
Bochet, E.5
Conroy, M.J.6
Dana, J.M.7
Fernandez Montecelo, M.A.8
Van Ginkel, G.9
Gore, S.P.10
-
39
-
-
84976903291
-
XML: Extensible markup language
-
Jackson, K. (2000) XML: Extensible markup language. Tech. Commun., 47, 108-109.
-
(2000)
Tech. Commun.
, vol.47
, pp. 108-109
-
-
Jackson, K.1
-
40
-
-
84889263238
-
Computational and theoretical methods for protein folding
-
Compiani, M. and Capriotti, E. (2013) Computational and theoretical methods for protein folding. Biochemistry, 52, 8601-8624.
-
(2013)
Biochemistry
, vol.52
, pp. 8601-8624
-
-
Compiani, M.1
Capriotti, E.2
-
41
-
-
84873526912
-
To milliseconds and beyond: Challenges in the simulation of protein folding
-
Lane, T.J., Shukla, D., Beauchamp, K.A. and Pande, V.S. (2013) To milliseconds and beyond: challenges in the simulation of protein folding. Curr. Opin. Struct. Biol., 23, 58-65.
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 58-65
-
-
Lane, T.J.1
Shukla, D.2
Beauchamp, K.A.3
Pande, V.S.4
-
42
-
-
80055081145
-
How fast-folding proteins fold
-
Lindorff-Larsen, K., Piana, S., Dror, R.O. and Shaw, D.E. (2011) How fast-folding proteins fold. Science, 334, 517-520.
-
(2011)
Science
, vol.334
, pp. 517-520
-
-
Lindorff-Larsen, K.1
Piana, S.2
Dror, R.O.3
Shaw, D.E.4
-
43
-
-
76149136021
-
Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)
-
Voelz, V.A., Bowman, G.R., Beauchamp, K. and Pande, V.S. (2010) Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39). J. Am. Chem. Soc., 132, 1526-1528.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 1526-1528
-
-
Voelz, V.A.1
Bowman, G.R.2
Beauchamp, K.3
Pande, V.S.4
-
44
-
-
0037221599
-
Is there a unifying mechanism for protein folding?
-
Daggett, V. and Fersht, A.R. (2003) Is there a unifying mechanism for protein folding? Trends Biochem. Sci., 28, 18-25.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 18-25
-
-
Daggett, V.1
Fersht, A.R.2
-
45
-
-
84869761071
-
The protein-folding problem, 50 years on
-
Dill, K.A. and MacCallum, J.L. (2012) The protein-folding problem, 50 years on. Science, 338, 1042-1046.
-
(2012)
Science
, vol.338
, pp. 1042-1046
-
-
Dill, K.A.1
MacCallum, J.L.2
-
47
-
-
84857033993
-
How, when and why proteins collapse: The relation to folding
-
Haran, G. (2012) How, when and why proteins collapse: the relation to folding. Curr. Opin. Struct. Biol., 22, 14-20.
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 14-20
-
-
Haran, G.1
-
48
-
-
79551684199
-
The folding of single domain proteins-have we reached a consensus?
-
Sosnick, T.R. and Barrick, D. (2011) The folding of single domain proteins-have we reached a consensus? Curr. Opin. Struct. Biol., 21, 12-24.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 12-24
-
-
Sosnick, T.R.1
Barrick, D.2
|