-
1
-
-
0026511656
-
The folding of an enzyme 1. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht AR, Matouschek A, Serrano L (1992) The folding of an enzyme 1. Theory of protein engineering analysis of stability and pathway of protein folding. J Mol Biol 224(3):771-782.
-
(1992)
J Mol Biol
, vol.224
, Issue.3
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
2
-
-
0037686252
-
The present view of the mechanism of protein folding
-
DOI 10.1038/nrm1126
-
Daggett V, Fersht A (2003) The present view of the mechanism of protein folding. Nat Rev Mol Cell Biol 4(6):497-502. (Pubitemid 36648595)
-
(2003)
Nature Reviews Molecular Cell Biology
, vol.4
, Issue.6
, pp. 497-502
-
-
Daggett, V.1
Fersht, A.2
-
3
-
-
33747592347
-
The experimental survey of protein-folding energy landscapes
-
DOI 10.1017/S0033583506004185, PII S0033583506004185
-
Oliveberg M, Wolynes PG (2005) The experimental survey of protein-folding energy landscapes. Q Rev Biophys 38(3):245-288. (Pubitemid 44268537)
-
(2005)
Quarterly Reviews of Biophysics
, vol.38
, Issue.3
, pp. 245-288
-
-
Oliveberg, M.1
Wolynes, P.G.2
-
4
-
-
0014604482
-
Thermodynamics of denaturation of lysozyme by guanidine hydrochloride 2. Dependence on denaturant concentration at 25 degrees
-
Aune KC, Tanford C (1969) Thermodynamics of denaturation of lysozyme by guanidine hydrochloride 2. Dependence on denaturant concentration at 25 degrees. Biochemistry 8(11):4586-4590.
-
(1969)
Biochemistry
, vol.8
, Issue.11
, pp. 4586-4590
-
-
Aune, K.C.1
Tanford, C.2
-
5
-
-
0028868995
-
The structure of the transition-state for folding of chymotrypsin inhibitor-2 analyzed by protein engineering methods - Evidence for a nucleation-condensation mechanism for protein-folding
-
Itzhaki LS, Otzen DE, Fersht AR (1995) The structure of the transition-state for folding of chymotrypsin inhibitor-2 analyzed by protein engineering methods - Evidence for a nucleation-condensation mechanism for protein-folding. J Mol Biol 254(2):260-288.
-
(1995)
J Mol Biol
, vol.254
, Issue.2
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
6
-
-
0000227308
-
Variational theory for site resolved protein folding free energy surfaces
-
Portman JJ, Takada S, Wolynes PG (1998) Variational theory for site resolved protein folding free energy surfaces. Phys Rev Lett 81(23):5237-5240.
-
(1998)
Phys Rev Lett
, vol.81
, Issue.23
, pp. 5237-5240
-
-
Portman, J.J.1
Takada, S.2
Wolynes, P.G.3
-
9
-
-
57449106823
-
Chemical, physical, and theoretical kinetics of an ultrafast folding protein
-
Kubelka J, Henry ER, Cellmer T, Hofrichter J, Eaton WA (2008) Chemical, physical, and theoretical kinetics of an ultrafast folding protein. Proc Natl Acad Sci USA 105:18655-18662.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 18655-18662
-
-
Kubelka, J.1
Henry, E.R.2
Cellmer, T.3
Hofrichter, J.4
Eaton, W.A.5
-
10
-
-
0034685604
-
Topological and energetic factors: What determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins
-
Clementi C, Nymeyer H, Onuchic JN (2000) Topological and energetic factors: What determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins. J Mol Biol 298:937-953.
-
(2000)
J Mol Biol
, vol.298
, pp. 937-953
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.N.3
-
11
-
-
0037154980
-
Protein folding and unfolding at atomic resolution
-
Fersht AR, Daggett V (2002) Protein folding and unfolding at atomic resolution. Cell 108(4):573-582.
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 573-582
-
-
Fersht, A.R.1
Daggett, V.2
-
12
-
-
0035252350
-
Three key residues form a critical contact network in a protein folding transition state
-
DOI 10.1038/35054591
-
Vendruscolo M, Paci E, Dobson CM, Karplus M (2001) Three key residues form a critical contact network in a protein folding transition state. Nature 409(6820):641-645. (Pubitemid 32154819)
-
(2001)
Nature
, vol.409
, Issue.6820
, pp. 641-645
-
-
Vendruscolo, M.1
Paci, E.2
Dobson, C.M.3
Karplus, M.4
-
13
-
-
0345304461
-
Origin of unusual Phi-values in protein folding: Evidence against specific nucleation sites
-
Sanchez IE, Kiefhaber T (2003) Origin of unusual Phi-values in protein folding: Evidence against specific nucleation sites. J Mol Biol 334(5):1077-1085.
-
(2003)
J Mol Biol
, vol.334
, Issue.5
, pp. 1077-1085
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
14
-
-
14844320178
-
The protein folding transition state: What are phi-values really telling us?
-
Raleigh DP, Plaxco KW(2005) The protein folding transition state: what are phi-values really telling us?. Protein Peptide Lett 12(2):117-122.
-
(2005)
Protein Peptide Lett
, vol.12
, Issue.2
, pp. 117-122
-
-
Raleigh, D.P.1
Plaxco, K.W.2
-
15
-
-
33644541811
-
On the precision of experimentally determined protein folding rates and phi-values
-
DOI 10.1110/ps.051870506
-
De Los Rios MA, et al. (2006) On the precision of experimentally determined protein folding rates and phi-values. Protein Sci 15(3):553-563. (Pubitemid 43306249)
-
(2006)
Protein Science
, vol.15
, Issue.3
, pp. 553-563
-
-
De Los Rios, M.A.1
Muralidhara, B.K.2
Wildes, D.3
Sosnick, T.R.4
Marqusee, S.5
Wittung-Stafshede, P.6
Plaxco, K.W.7
Ruczinski, I.8
-
16
-
-
0032503027
-
The changing nature of the protein folding transition state: Implications for the shape of the free-energy profile for folding
-
DOI 10.1006/jmbi.1997.1612
-
Oliveberg M, Tan YJ, Silow M, Fersht AR (1998) The changing nature of the protein folding transition state: Implications for the shape of the free-energy profile for folding. J Mol Biol 277(4):933-943. (Pubitemid 28195991)
-
(1998)
Journal of Molecular Biology
, vol.277
, Issue.4
, pp. 933-943
-
-
Oliveberg, M.1
Tan, Y.-J.2
Silow, M.3
Fersht, A.R.4
-
17
-
-
0035839050
-
The folding mechanism of a beta-sheet: The WW domain
-
Jager M, Nguyen H, Crane JC, Kelly JW, Gruebele M (2001) The folding mechanism of a beta-sheet: The WW domain. J Mol Biol 311(2):373-393.
-
(2001)
J Mol Biol
, vol.311
, Issue.2
, pp. 373-393
-
-
Jager, M.1
Nguyen, H.2
Crane, J.C.3
Kelly, J.W.4
Gruebele, M.5
-
18
-
-
0033592876
-
From snapshot to movie: phi analysis of protein folding transition states taken one step further
-
DOI 10.1073/pnas.96.26.14854
-
Ternstrom T, Mayor U, Akke M, Oliveberg M (1999) From snapshot to movie: Phi analysis of protein folding transition states taken one step further. Proc Natl Acad Sci USA 96(26):14854-14859. (Pubitemid 30019729)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.26
, pp. 14854-14859
-
-
Ternstrom, T.1
Mayor, U.2
Akke, M.3
Oliveberg, M.4
-
20
-
-
0037418635
-
Hammond behavior versus ground state effects in protein folding: Evidence for narrow free energy barriers and residual structure in unfolded states
-
Sanchez IE, Kiefhaber T (2003) Hammond behavior versus ground state effects in protein folding: Evidence for narrow free energy barriers and residual structure in unfolded states. J Mol Biol 327:867-884.
-
(2003)
J Mol Biol
, vol.327
, pp. 867-884
-
-
Sanchez, I.E.1
Kiefhaber, T.2
-
21
-
-
33845918456
-
Denatured state effects and the origin of nonclassical phi values in protein folding
-
Cho JH, Raleigh DP (2006) Denatured state effects and the origin of nonclassical phi values in protein folding. J Am Chem Soc 128(51):16492-16493.
-
(2006)
J Am Chem Soc
, vol.128
, Issue.51
, pp. 16492-16493
-
-
Cho, J.H.1
Raleigh, D.P.2
-
22
-
-
58849083668
-
Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics
-
Cho SS, Levy Y, Wolynes PG (2009) Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics. Proc Natl Acad Sci USA 106:434-439.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 434-439
-
-
Cho, S.S.1
Levy, Y.2
Wolynes, P.G.3
-
23
-
-
0032574698
-
Context-dependent nature of destabilizing mutations on the stability of FKBP12
-
Main ERG, Fulton KF, Jackson SE (1998) Context-dependent nature of destabilizing mutations on the stability of FKBP12. Biochemistry 37(17):6145-6153.
-
(1998)
Biochemistry
, vol.37
, Issue.17
, pp. 6145-6153
-
-
Main, E.R.G.1
Fulton, K.F.2
Jackson, S.E.3
-
24
-
-
2542599277
-
Phi-value analysis and the nature of protein-folding transition states
-
Fersht AR, Sato S (2004) Phi-value analysis and the nature of protein-folding transition states. Proc Natl Acad Sci USA 101(21):7976-7981.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.21
, pp. 7976-7981
-
-
Fersht, A.R.1
Sato, S.2
-
25
-
-
34748838920
-
Protein Folding Kinetics Provides a Context-independent Assessment of beta-Strand Propensity in the Fyn SH3 Domain
-
DOI 10.1016/j.jmb.2007.07.059, PII S0022283607010248
-
Zarrine-Afsar A, Dahesh S, Davidson AR (2007) Protein folding kinetics provides a context-independent assessment of beta-strand propensity in the fyn SH3 domain. J Mol Biol 373:764-774. (Pubitemid 47488391)
-
(2007)
Journal of Molecular Biology
, vol.373
, Issue.3
, pp. 764-774
-
-
Zarrine-Afsar, A.1
Dahesh, S.2
Davidson, A.R.3
-
27
-
-
36749012371
-
Relaxation rate for an ultrafast folding protein is independent of chemical denaturant concentration
-
DOI 10.1021/ja0761939
-
Cellmer T, Henry ER, Kubelka J, Hofrichter J, Eaton WA (2007) Relaxation rate for an ultrafast folding protein is independent of chemical denaturant concentration. J Am Chem Soc 129:14564-14565. (Pubitemid 350207863)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.47
, pp. 14564-14565
-
-
Cellmer, T.1
Henry, E.R.2
Kubelka, J.3
Hofrichter, J.4
Eaton, W.A.5
-
29
-
-
0030979740
-
Folding funnels and energy landscapes of larger proteins within the capillarity approximation
-
Wolynes PG (1997) Folding funnels and energy landscapes of larger proteins within the capillarity approximation. Proc Natl Acad Sci USA 94:6170-6175.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 6170-6175
-
-
Wolynes, P.G.1
-
30
-
-
34247880253
-
Protein folding kinetics: Barrier effects in chemical and thermal denaturation experiments
-
Naganathan AN, Doshi U, Muñoz V (2007) Protein folding kinetics: Barrier effects in chemical and thermal denaturation experiments. J Am Chem Soc 129(17):5673-5682.
-
(2007)
J Am Chem Soc
, vol.129
, Issue.17
, pp. 5673-5682
-
-
Naganathan, A.N.1
Doshi, U.2
Muñoz, V.3
-
31
-
-
69149110300
-
Exploiting the downhill folding regime via experiment
-
Muñoz V, Sadqi M, Naganathan AN, de Sancho D (2008) Exploiting the downhill folding regime via experiment. HFSP J 2(6):342-353.
-
(2008)
HFSP J
, vol.2
, Issue.6
, pp. 342-353
-
-
Muñoz, V.1
Sadqi, M.2
Naganathan, A.N.3
De Sancho, D.4
-
32
-
-
4444324627
-
The nature of the free energy barriers to two-state folding
-
Akmal A, Muñoz V (2004) The nature of the free energy barriers to two-state folding. Proteins 57(1):142-152.
-
(2004)
Proteins
, vol.57
, Issue.1
, pp. 142-152
-
-
Akmal, A.1
Muñoz, V.2
-
33
-
-
33646866548
-
phi-value analysis of apo-azurin folding: Comparison between experiment and theory
-
DOI 10.1021/bi060025w
-
Zong C, Wilson CJ, Shen T, Wolynes PG, Wittung-Stafshede P (2006) Phi-value analysis of apo-azurin folding: Comparison between experiment and theory. Biochemistry 45:6458-6466. (Pubitemid 43787811)
-
(2006)
Biochemistry
, vol.45
, Issue.20
, pp. 6458-6466
-
-
Zong, C.1
Wilson, C.J.2
Shen, T.3
Wolynes, P.G.4
Wittung-Stafshede, P.5
-
34
-
-
0033515615
-
Exploring structures in protein folding funnels with free energy functionals: The transition state ensemble
-
DOI 10.1006/jmbi.1999.2613
-
Shoemaker BA, Wang J, Wolynes PG (1999) Exploring structures in protein folding funnels with free energy functionals: The transition state ensemble. J Mol Biol 287:675-694. (Pubitemid 29168441)
-
(1999)
Journal of Molecular Biology
, vol.287
, Issue.3
, pp. 675-694
-
-
Shoemaker, B.A.1
Wang, J.2
Wolynes, P.G.3
-
35
-
-
0038630483
-
Folding rates and low-entropy-loss routes of two-state proteins
-
Weikl TR, Dill KA (2003) Folding rates and low-entropy-loss routes of two-state proteins. J Mol Biol 329:585-598.
-
(2003)
J Mol Biol
, vol.329
, pp. 585-598
-
-
Weikl, T.R.1
Dill, K.A.2
-
36
-
-
0034612228
-
Investigation of routes and funnels in protein folding by free energy functional methods
-
Plotkin SS, Onuchic JN (2000) Investigation of routes and funnels in protein folding by free energy functional methods. Proc Natl Acad Sci USA 97(12):6509-6514.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.12
, pp. 6509-6514
-
-
Plotkin, S.S.1
Onuchic, J.N.2
-
37
-
-
0028024928
-
Specific nucleus as the transition-state for protein-folding - Evidence from the lattice model
-
Abkevich VI, Gutin AM, Shakhnovich EI (1994) Specific nucleus as the transition-state for protein-folding - Evidence from the lattice model. Biochemistry 33(33): 10026-10036.
-
(1994)
Biochemistry
, vol.33
, Issue.33
, pp. 10026-10036
-
-
Abkevich, V.I.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
38
-
-
0029124248
-
Molten globule and protein folding
-
Ptitsyn OB (1995) Molten globule and protein folding. Adv Protein Chem 47:83-229.
-
(1995)
Adv Protein Chem
, vol.47
, pp. 83-229
-
-
Ptitsyn, O.B.1
-
39
-
-
33746102627
-
Atom-by-atom analysis of global downhill protein folding
-
Sadqi M, Fushman D, Muñoz V (2006) Atom-by-atom analysis of global downhill protein folding. Nature 442(7100):317-321.
-
(2006)
Nature
, vol.442
, Issue.7100
, pp. 317-321
-
-
Sadqi, M.1
Fushman, D.2
Muñoz, V.3
|