-
1
-
-
85027919900
-
Genome-based prediction of testcross values in maize
-
PID: 21505832
-
Albrecht T, Wimmer V, Auinger HJ et al (2011) Genome-based prediction of testcross values in maize. Theor Appl Genet 123:339–350
-
(2011)
Theor Appl Genet
, vol.123
, pp. 339-350
-
-
Albrecht, T.1
Wimmer, V.2
Auinger, H.J.3
-
2
-
-
84946781295
-
Genomic selection for predicting Fusarium head blight resistance in a wheat breeding program
-
Arruda MP, Brown PJ, Lipka AE et al (2015) Genomic selection for predicting Fusarium head blight resistance in a wheat breeding program. Plant Gen 8:1–12
-
(2015)
Plant Gen
, vol.8
, pp. 1-12
-
-
Arruda, M.P.1
Brown, P.J.2
Lipka, A.E.3
-
3
-
-
84959421395
-
Genome-wide association mapping of Fusarium head blight resistance in wheat (Triticum aestivum L.) using genotyping-by-sequencing
-
Arruda MP, Brown PJ, Brown-Guedira G et al (2016) Genome-wide association mapping of Fusarium head blight resistance in wheat (Triticum aestivum L.) using genotyping-by-sequencing. Plant Gen. https://dl.sciencesocieties.org/publications/tpg/first-look. Accessed 11 Dec 2015
-
(2016)
Plant Gen
-
-
Arruda, M.P.1
Brown, P.J.2
Brown-Guedira, G.3
-
4
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 57:289–300
-
(1995)
J R Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
5
-
-
54949113665
-
Molecular markers and selection for complex traits in plants: learning from the last 20 years
-
Bernardo R (2008) Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci 48:1649–1664
-
(2008)
Crop Sci
, vol.48
, pp. 1649-1664
-
-
Bernardo, R.1
-
6
-
-
84890396289
-
Genomewide selection when major genes are known
-
Bernardo R (2014) Genomewide selection when major genes are known. Crop Sci 54:68–75
-
(2014)
Crop Sci
, vol.54
, pp. 68-75
-
-
Bernardo, R.1
-
7
-
-
58849088886
-
QTL mapping and marker-assisted selection for Fusarium head blight resistance in wheat: a review
-
COI: 1:CAS:528:DC%2BD1MXjs1Knsr0%3D
-
Buerstmayr H, Ban T, Anderson JA (2009) QTL mapping and marker-assisted selection for Fusarium head blight resistance in wheat: a review. Plant Breed 128:1–26
-
(2009)
Plant Breed
, vol.128
, pp. 1-26
-
-
Buerstmayr, H.1
Ban, T.2
Anderson, J.A.3
-
8
-
-
0346373654
-
Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
-
COI: 1:CAS:528:DC%2BD2cXlvVOrsA%3D%3D, PID: 14681826
-
Carlson CS, Eberle MA, Rieder MJ et al (2004) Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 74:106–120
-
(2004)
Am J Hum Genet
, vol.74
, pp. 106-120
-
-
Carlson, C.S.1
Eberle, M.A.2
Rieder, M.J.3
-
9
-
-
36849039475
-
Prediction of response to marker-assisted and genomic selection using selection index theory
-
COI: 1:STN:280:DC%2BD2sjjvFyiuw%3D%3D, PID: 18076470
-
Dekkers JCM (2007) Prediction of response to marker-assisted and genomic selection using selection index theory. J Anim Breed Genet 124:331–341
-
(2007)
J Anim Breed Genet
, vol.124
, pp. 331-341
-
-
Dekkers, J.C.M.1
-
10
-
-
84906943620
-
Genomic selection: genome-wide prediction in plant improvement
-
COI: 1:CAS:528:DC%2BC2cXhtFans7rJ, PID: 24970707
-
Desta ZA, Ortiz R (2014) Genomic selection: genome-wide prediction in plant improvement. Trends Plant Sci 19:592–601
-
(2014)
Trends Plant Sci
, vol.19
, pp. 592-601
-
-
Desta, Z.A.1
Ortiz, R.2
-
11
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
COI: 1:CAS:528:DC%2BC3MXmtVKru7Y%3D, PID: 21573248
-
Elshire RJ, Glaubitz JC, Sun Q et al (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 6:e19379
-
(2011)
PLoS One
, vol.6
, pp. e19379
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
-
12
-
-
85136354327
-
Ridge regression and other kernels for genomic selection with R package rrBLUP
-
Endelman JB (2011) Ridge regression and other kernels for genomic selection with R package rrBLUP. Plant Gen 4:250–255
-
(2011)
Plant Gen
, vol.4
, pp. 250-255
-
-
Endelman, J.B.1
-
13
-
-
36849004453
-
Genomic selection
-
COI: 1:STN:280:DC%2BD2sjjvFyiug%3D%3D, PID: 18076469
-
Goddard ME, Hayes BJ (2007) Genomic selection. J Anim Breed Genet 124:323–330
-
(2007)
J Anim Breed Genet
, vol.124
, pp. 323-330
-
-
Goddard, M.E.1
Hayes, B.J.2
-
14
-
-
0001138328
-
Algorithm AS 136: a K-means clustering algorithm
-
Hartigan JA, Wong MA (1979) Algorithm AS 136: a K-means clustering algorithm. Appl Stat 28:100–108
-
(1979)
Appl Stat
, vol.28
, pp. 100-108
-
-
Hartigan, J.A.1
Wong, M.A.2
-
15
-
-
85167520539
-
Genomic selection accuracy using multifamily prediction models in a wheat breeding program
-
Heffner EL, Jannink J-L, Sorrells ME (2011) Genomic selection accuracy using multifamily prediction models in a wheat breeding program. Plant Gen 4:65–75
-
(2011)
Plant Gen
, vol.4
, pp. 65-75
-
-
Heffner, E.L.1
Jannink, J.-L.2
Sorrells, M.E.3
-
16
-
-
82955176938
-
Genomic selection in plant breeding: a comparison of models
-
Heslot N, Yang H-P, Sorrells ME et al (2012) Genomic selection in plant breeding: a comparison of models. Crop Sci 52:14–160
-
(2012)
Crop Sci
, vol.52
, pp. 14-160
-
-
Heslot, N.1
Yang, H.-P.2
Sorrells, M.E.3
-
17
-
-
77951987956
-
Genomic selection in plant breeding: from theory to practice
-
COI: 1:CAS:528:DC%2BC3cXjvF2hu7Y%3D
-
Jannink J-L, Lorenz AJ, Iwata H (2010) Genomic selection in plant breeding: from theory to practice. Brief Funct Genom 9:166–177
-
(2010)
Brief Funct Genom
, vol.9
, pp. 166-177
-
-
Jannink, J.-L.1
Lorenz, A.J.2
Iwata, H.3
-
18
-
-
84922614086
-
Potential and limits to unravel the genetic architecture and predict the variation of Fusarium head blight resistance in European winter wheat (Triticum aestivum L.)
-
COI: 1:CAS:528:DC%2BC2MXisVyjtLw%3D, PID: 25388142
-
Jiang Y, Zhao Y, Rodemann B et al (2015) Potential and limits to unravel the genetic architecture and predict the variation of Fusarium head blight resistance in European winter wheat (Triticum aestivum L.). Heredity 114:318–326
-
(2015)
Heredity
, vol.114
, pp. 318-326
-
-
Jiang, Y.1
Zhao, Y.2
Rodemann, B.3
-
19
-
-
84881519573
-
Fusarium head blight resistance in US winter wheat cultivars and elite breeding lines
-
Jin F, Zhang D, Bockus W et al (2013) Fusarium head blight resistance in US winter wheat cultivars and elite breeding lines. Crop Sci 53:2006–2013
-
(2013)
Crop Sci
, vol.53
, pp. 2006-2013
-
-
Jin, F.1
Zhang, D.2
Bockus, W.3
-
20
-
-
84866467273
-
GAPIT: genome association and prediction integrated tool
-
COI: 1:CAS:528:DC%2BC38XhtlantbrP, PID: 22796960
-
Lipka AE, Tian F, Wang Q et al (2012) GAPIT: genome association and prediction integrated tool. Bioinformatics 28:2397–2399
-
(2012)
Bioinformatics
, vol.28
, pp. 2397-2399
-
-
Lipka, A.E.1
Tian, F.2
Wang, Q.3
-
21
-
-
34447625522
-
QTL associated with Fusarium head blight resistance in the soft red winter wheat Ernie
-
COI: 1:CAS:528:DC%2BD2sXnvFKqt78%3D, PID: 17569028
-
Liu S, Abate ZA, Lu H et al (2007) QTL associated with Fusarium head blight resistance in the soft red winter wheat Ernie. Theor Appl Genet 115:417–427
-
(2007)
Theor Appl Genet
, vol.115
, pp. 417-427
-
-
Liu, S.1
Abate, Z.A.2
Lu, H.3
-
22
-
-
59649107398
-
Toward positional cloning of FHB1, a major QTL for fusarium head blight resistance in wheat
-
COI: 1:CAS:528:DC%2BD1cXhtFymurfL
-
Liu S, Pumphrey MO, Gill BS et al (2008) Toward positional cloning of FHB1, a major QTL for fusarium head blight resistance in wheat. Cereal Res Commun Suppl B 36:195–2012
-
(2008)
Cereal Res Commun Suppl B
, vol.36
, pp. 195-2012
-
-
Liu, S.1
Pumphrey, M.O.2
Gill, B.S.3
-
23
-
-
70749120915
-
Meta-analysis of QTL associated with Fusarium head blight resistance
-
COI: 1:CAS:528:DC%2BD1MXhsFWjsr3N
-
Liu S, Hall MD, Griffey CA et al (2009) Meta-analysis of QTL associated with Fusarium head blight resistance. Crop Sci 49:1955–1968
-
(2009)
Crop Sci
, vol.49
, pp. 1955-1968
-
-
Liu, S.1
Hall, M.D.2
Griffey, C.A.3
-
24
-
-
61449234085
-
Revealing the genetic architecture of FHB resistance in hexaploid wheat (Triticum aestivum L.) by QTL meta-analysis
-
Loffler M, Schon CC, Miedaner T (2009) Revealing the genetic architecture of FHB resistance in hexaploid wheat (Triticum aestivum L.) by QTL meta-analysis. Mol Breed 23:473–488
-
(2009)
Mol Breed
, vol.23
, pp. 473-488
-
-
Loffler, M.1
Schon, C.C.2
Miedaner, T.3
-
25
-
-
84878750602
-
Relatedness and genotype x environment interaction affect prediction accuracies in genomic selection: a study in cassava
-
Ly D, Hamblin M, Rabbi I et al (2013) Relatedness and genotype x environment interaction affect prediction accuracies in genomic selection: a study in cassava. Crop Sci 53:1312–1325
-
(2013)
Crop Sci
, vol.53
, pp. 1312-1325
-
-
Ly, D.1
Hamblin, M.2
Rabbi, I.3
-
26
-
-
68149167708
-
Assessing heterogeneity in the relationship between wheat yield and Fusarium head blight intensity using random-coefficient mixed models
-
COI: 1:STN:280:DC%2BD1Mvhsl2ntw%3D%3D, PID: 19522583
-
Madden LV, Paul PA (2009) Assessing heterogeneity in the relationship between wheat yield and Fusarium head blight intensity using random-coefficient mixed models. Phytopathology 99:850–860
-
(2009)
Phytopathology
, vol.99
, pp. 850-860
-
-
Madden, L.V.1
Paul, P.A.2
-
27
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
COI: 1:CAS:528:DC%2BD3MXjsFemtbY%3D, PID: 11290733
-
Meuwissen THE, Hayes BJ, Goddard ME (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics 157:1819–1829
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
28
-
-
77949812757
-
A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers
-
PID: 20043835
-
Moser G, Tier B, Crump RE et al (2009) A comparison of five methods to predict genomic breeding values of dairy bulls from genome-wide SNP markers. Genet Sel Evol 41:56
-
(2009)
Genet Sel Evol
, vol.41
, pp. 56
-
-
Moser, G.1
Tier, B.2
Crump, R.E.3
-
29
-
-
69949135484
-
Association mapping: critical considerations shift from genotyping to experimental design
-
COI: 1:CAS:528:DC%2BD1MXht12qsL3P, PID: 19654263
-
Myles S, Peiffer J, Brown PJ et al (2009) Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell 21:2194–2202
-
(2009)
Plant Cell
, vol.21
, pp. 2194-2202
-
-
Myles, S.1
Peiffer, J.2
Brown, P.J.3
-
30
-
-
84915748046
-
A foundation for provitamin a biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels
-
PID: 25258377
-
Owens BF, Lipka AE, Magallanes-Lundback M et al (2014) A foundation for provitamin a biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels. Genetics 198:1699–1716
-
(2014)
Genetics
, vol.198
, pp. 1699-1716
-
-
Owens, B.F.1
Lipka, A.E.2
Magallanes-Lundback, M.3
-
31
-
-
84921746700
-
Advances in plant genotyping: where the future will take us
-
Batley J, (ed), Springer, New York
-
Patel D, Zander M, Dalton-Morgan J et al (2015) Advances in plant genotyping: where the future will take us. In: Batley J (ed) Plant genotyping. Springer, New York, pp 1–11
-
(2015)
Plant genotyping
, pp. 1-11
-
-
Patel, D.1
Zander, M.2
Dalton-Morgan, J.3
-
32
-
-
84878537188
-
Genomic selection in wheat breeding using genotyping-by-sequencing
-
COI: 1:CAS:528:DC%2BC3sXlvVaksrw%3D
-
Poland JA, Endelman J, Dawson J et al (2012) Genomic selection in wheat breeding using genotyping-by-sequencing. Plant Gen 5:103–113
-
(2012)
Plant Gen
, vol.5
, pp. 103-113
-
-
Poland, J.A.1
Endelman, J.2
Dawson, J.3
-
33
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
COI: 1:CAS:528:DC%2BD28XnsVCgsrg%3D, PID: 16862161
-
Price AL, Patterson NJ, Plenge RM et al (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38:904–909
-
(2006)
Nat Genet
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
-
34
-
-
84859625578
-
Accuracy of genomic selection methods in a standard data set of loblolly pine (Pinus taeda L.)
-
PID: 22271763
-
Resende MFR, Muñoz P, Resende MDV et al (2012) Accuracy of genomic selection methods in a standard data set of loblolly pine (Pinus taeda L.). Genetics 190:1503–1510
-
(2012)
Genetics
, vol.190
, pp. 1503-1510
-
-
Resende, M.F.R.1
Muñoz, P.2
Resende, M.D.V.3
-
35
-
-
84878558210
-
Evaluation of genomic prediction methods for Fusarium head blight resistance in wheat
-
COI: 1:CAS:528:DC%2BC38Xht1Ggu7%2FO
-
Rutkoski JE, Benson J, Jia Y et al (2012) Evaluation of genomic prediction methods for Fusarium head blight resistance in wheat. Plant Gen 5:51–61
-
(2012)
Plant Gen
, vol.5
, pp. 51-61
-
-
Rutkoski, J.E.1
Benson, J.2
Jia, Y.3
-
36
-
-
84883302611
-
Imputation of unordered markers and the impact on genomic selection accuracy
-
Rutkoski JE, Poland JA, Jannink J-L et al (2013) Imputation of unordered markers and the impact on genomic selection accuracy. G3 Genes Genom Genet 3:427–439
-
(2013)
G3 Genes Genom Genet
, vol.3
, pp. 427-439
-
-
Rutkoski, J.E.1
Poland, J.A.2
Jannink, J.-L.3
-
37
-
-
84908402747
-
Genomic selection for quantitative adult plant stem rust resistance in wheat
-
Rutkoski JE, Poland JA, Singh RP et al (2014) Genomic selection for quantitative adult plant stem rust resistance in wheat. Plant Gen 7:1–10
-
(2014)
Plant Gen
, vol.7
, pp. 1-10
-
-
Rutkoski, J.E.1
Poland, J.A.2
Singh, R.P.3
-
38
-
-
84863304598
-
R: a language and environment for statistical computing
-
Vienna, Austria
-
R Development Core Team (2013) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www-R-project.org
-
(2013)
R Foundation for Statistical Computing
-
-
Development Core Team, R.1
-
42
-
-
84924428504
-
Genomic selection and association mapping in rice (Oryza sativa): effects of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines
-
Spindel J, Begum H, Akdemir D et al (2015) Genomic selection and association mapping in rice (Oryza sativa): effects of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines. PLoS Genet 11:e100498
-
(2015)
PLoS Genet
, vol.11
, pp. e100498
-
-
Spindel, J.1
Begum, H.2
Akdemir, D.3
-
43
-
-
55849133422
-
Efficient methods to compute genomic predictions
-
COI: 1:CAS:528:DC%2BD1cXhtlajtLzO, PID: 18946147
-
VanRaden P (2008) Efficient methods to compute genomic predictions. J Dairy Sci 91:4414–4423
-
(2008)
J Dairy Sci
, vol.91
, pp. 4414-4423
-
-
VanRaden, P.1
-
44
-
-
84921409258
-
The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years
-
Wang Y, Mette MF, Miedaner T et al (2014) The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years. BMC Genom 15:556
-
(2014)
BMC Genom
, vol.15
, pp. 556
-
-
Wang, Y.1
Mette, M.F.2
Miedaner, T.3
-
45
-
-
84875909665
-
DNA sequencing costs: data from the NHGRI large-scale genome sequencing program
-
National Human Genome Research Institute, Bethesda, MD
-
Wetterstrand KA (2016) DNA sequencing costs: data from the NHGRI large-scale genome sequencing program. National Human Genome Research Institute, Bethesda, MD. http://www.genome.gov/sequencingcosts. Accessed 16 Mar 2016
-
(2016)
-
-
Wetterstrand, K.A.1
-
47
-
-
31744440502
-
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
-
COI: 1:CAS:528:DC%2BD28XotlGmuw%3D%3D, PID: 16380716
-
Yu J, Pressoir G, Briggs WH et al (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38:203–208
-
(2006)
Nat Genet
, vol.38
, pp. 203-208
-
-
Yu, J.1
Pressoir, G.2
Briggs, W.H.3
-
48
-
-
77950299137
-
Mixed linear model approach adapted for genome-wide association studies
-
COI: 1:CAS:528:DC%2BC3cXivVCju7Y%3D, PID: 20208535
-
Zhang Z, Ersoz E, Lai CQ et al (2010) Mixed linear model approach adapted for genome-wide association studies. Nat Genet 42:355–360
-
(2010)
Nat Genet
, vol.42
, pp. 355-360
-
-
Zhang, Z.1
Ersoz, E.2
Lai, C.Q.3
-
49
-
-
84901019284
-
Bridging the gap between marker-assisted and genomic selection of heading time and plant height in hybrid wheat
-
COI: 1:CAS:528:DC%2BC2cXis1agtro%3D, PID: 24518889
-
Zhao Y, Mette MF, Gowda M et al (2014) Bridging the gap between marker-assisted and genomic selection of heading time and plant height in hybrid wheat. Heredity 112:638–645
-
(2014)
Heredity
, vol.112
, pp. 638-645
-
-
Zhao, Y.1
Mette, M.F.2
Gowda, M.3
-
50
-
-
0036434990
-
Genetic analysis of scab resistance and QTL in wheat with microsatellite and AFLP markers
-
COI: 1:CAS:528:DC%2BD38XntVersrg%3D, PID: 12175075
-
Zhou W, Kolb FL, Bai G et al (2002) Genetic analysis of scab resistance and QTL in wheat with microsatellite and AFLP markers. Genome 45:719–727
-
(2002)
Genome
, vol.45
, pp. 719-727
-
-
Zhou, W.1
Kolb, F.L.2
Bai, G.3
|