-
1
-
-
84886326818
-
Future prospects of molecular markers in plants
-
In: Henry RJ, Wiley, New York
-
Mir RR, Varshney RK (2013) Future prospects of molecular markers in plants. In: Henry RJ (ed) Molecular markers in plants. Wiley, New York, pp 169–190
-
(2013)
Molecular markers in plants
, pp. 169-190
-
-
Mir, R.R.1
Varshney, R.K.2
-
2
-
-
41049102508
-
Advances in molecular marker techniques and their applications in plant sciences
-
Agarwal M, Shrivastava N, Padh H (2008) Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Rep 27:617–631
-
(2008)
Plant Cell Rep
, vol.27
, pp. 617-631
-
-
Agarwal, M.1
Shrivastava, N.2
Padh, H.3
-
3
-
-
51849086295
-
An innovative sub-32nm SRAM current sense amplifier in double-gate CMOS insensitive to process variations and transistor mismatch
-
Makosiej A, Nasalski P, Giraud B, Vladimirescu A, Amara A (2008) An innovative sub-32nm SRAM current sense amplifier in double-gate CMOS insensitive to process variations and transistor mismatch. IEEE Int Conf Integr Circuit Design Technol Proc 2008:47–50
-
(2008)
IEEE Int Conf Integr Circuit Design Technol Proc
, vol.2008
, pp. 47-50
-
-
Makosiej, A.1
Nasalski, P.2
Giraud, B.3
Vladimirescu, A.4
Amara, A.5
-
4
-
-
0028406882
-
Analysis of population genetic-structure with RAPD markers
-
Lynch M, Milligan BG (1994) Analysis of population genetic-structure with RAPD markers. Mol Ecol 3:91–99
-
(1994)
Mol Ecol
, vol.3
, pp. 91-99
-
-
Lynch, M.1
Milligan, B.G.2
-
5
-
-
65349159741
-
New technologies for ultra-high throughput genotyping in plants
-
Somers DJ, Langridge P, Gustafson JP (eds), Humana, Kentucky
-
Appleby N, Edwards D, Batley J (2009) New technologies for ultra-high throughput genotyping in plants. In: Somers DJ, Langridge P, Gustafson JP (eds) Plant genomics. Humana, Kentucky, pp 19–40
-
(2009)
Plant genomics
, pp. 19-40
-
-
Appleby, N.1
Edwards, D.2
Batley, J.3
-
6
-
-
78650518016
-
Microsatellite markers: An overview of the recent progress in plants
-
Kalia R, Rai M, Kalia S, Singh R, Dhawan AK (2011) Microsatellite markers: an overview of the recent progress in plants. Euphytica 177: 309–334
-
(2011)
Euphytica
, vol.177
, pp. 309-334
-
-
Kalia, R.1
Rai, M.2
Kalia, S.3
Singh, R.4
Dhawan, A.K.5
-
7
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3:e3376
-
(2008)
PLoS One
, vol.3
, pp. 3376
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
Currey, M.C.4
Shiver, A.L.5
Lewis, Z.A.6
Selker, E.U.7
Cresko, W.A.8
Johnson, E.A.9
-
8
-
-
0000330877
-
Large-scale, cost-effective screening of PCR products in marker-assisted selection applications
-
Gu WK, Weeden NF, Yu J, Wallace DH (1995) Large-scale, cost-effective screening of PCR products in marker-assisted selection applications. Theor Appl Genet 91:465–470
-
(1995)
Theor Appl Genet
, vol.91
, pp. 465-470
-
-
Gu, W.K.1
Weeden, N.F.2
Yu, J.3
Wallace, D.H.4
-
9
-
-
84865280408
-
An improved allele-specific PCR primer design method for SNP marker analysis and its application
-
Liu J, Huang SM, Sun MY, Liu SY, Liu YM, Wang WX, Zhang XR, Wang HZ, Hua W (2012) An improved allele-specific PCR primer design method for SNP marker analysis and its application. Plant Methods 8:34
-
(2012)
Plant Methods
, vol.8
, pp. 34
-
-
Liu, J.1
Huang, S.M.2
Sun, M.Y.3
Liu, S.Y.4
Liu, Y.M.5
Wang, W.X.6
Zhang, X.R.7
Wang, H.Z.8
Hua, W.9
-
10
-
-
49349106974
-
What are SNPs?
-
Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva H (eds), Springer, New York
-
Edwards D, Forster JW, Chagné D, Batley J (2007) What are SNPs? In: Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva H (eds) Association mapping in plants. Springer, New York, pp 41–52
-
(2007)
Association mapping in plants
, pp. 41-52
-
-
Edwards, D.1
Forster, J.W.2
Chagné, D.3
Batley, J.4
-
11
-
-
41149109252
-
Population genetics of fungal diseases of plants
-
Giraud T, Enjalbert J, Fournier E, Delmotte F, Dutech C (2008) Population genetics of fungal diseases of plants. Parasite 15:449–454
-
(2008)
Parasite
, vol.15
, pp. 449-454
-
-
Giraud, T.1
Enjalbert, J.2
Fournier, E.3
Delmotte, F.4
Dutech, C.5
-
12
-
-
55949119417
-
SNP applications in plants
-
Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva H (eds), Springer, New York
-
Batley J, Edwards D (2007) SNP applications in plants. In: Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva H (eds) Association mapping in plants. Springer, New York, pp 95–102
-
(2007)
Association mapping in plants
, pp. 95-102
-
-
Batley, J.1
Edwards, D.2
-
13
-
-
65349187578
-
Molecular genetic markers: Discovery, applications, data storage and visualisation
-
Duran C, Appleby N, Edwards D, Batley J (2009) Molecular genetic markers: discovery, applications, data storage and visualisation. Curr Bioinform 4:16–27
-
(2009)
Curr Bioinform
, vol.4
, pp. 16-27
-
-
Duran, C.1
Appleby, N.2
Edwards, D.3
Batley, J.4
-
14
-
-
33846058195
-
BASC: An integrated bioinformatics system for Brassica research
-
Erwin T, Jewell E, Love C, Lim G, Li X, Chapman R, Batley J, Stajich J, Mongin E, Stupka E, Ross B, Spangenberg GC, Edwards D (2007) BASC: an integrated bioinformatics system for Brassica research. Nucleic Acids Res 35:D870–D873
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 870-873
-
-
Erwin, T.1
Jewell, E.2
Love, C.3
Lim, G.4
Li, X.5
Chapman, R.6
Batley, J.7
Stajich, J.8
Mongin, E.9
Stupka, E.10
Ross, B.11
Spangenberg, G.C.12
Edwards, D.13
-
15
-
-
2942592312
-
New computational tools for Brassica genome research
-
Love CG, Batley J, Lim G, Robinson AJR, Savage D, Singh D, Spangenberg GC, Edwards D (2004) New computational tools for Brassica genome research. Comp Funct Genomics 5:276–280
-
(2004)
Comp Funct Genomics
, vol.5
, pp. 276-280
-
-
Love, C.G.1
Batley, J.2
Lim, G.3
Robinson, A.J.R.4
Savage, D.5
Singh, D.6
Spangenberg, G.C.7
Edwards, D.8
-
16
-
-
13444262323
-
Brassica ASTRA: An integrated database for Brassica genomic research
-
Love C, Robinson A, Lim G, Hopkins C, Batley J, Barker G, Spangenberg GC, Edwards D (2005) Brassica ASTRA: an integrated database for Brassica genomic research. Nucleic Acids Res 33:W493–W495
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 493-495
-
-
Love, C.1
Robinson, A.2
Lim, G.3
Hopkins, C.4
Batley, J.5
Barker, G.6
Spangenberg, G.C.7
Edwards, D.8
-
17
-
-
40549143455
-
Accessing integrated Brassica genetic and genomic data using the BASC server
-
In: Edwards D, Humana Press, USA
-
Love CG, Edwards D (2007) Accessing integrated Brassica genetic and genomic data using the BASC server. In: Edwards D (ed) Plant bioinformatics. Humana Press, USA, pp 229–244
-
(2007)
Plant bioinformatics
, pp. 229-244
-
-
Love, C.G.1
Edwards, D.2
-
18
-
-
51349127904
-
Single Nucleotide Polymorphism discovery
-
Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva H (eds), Springer, New York
-
Edwards D, Batley J, Cogan NOI, Forster JW, Chagné D (2007) Single Nucleotide Polymorphism discovery. In: Oraguzie NC, Rikkerink EHA, Gardiner SE, De Silva H (eds) Association mapping in plants. Springer, New York, pp 53–76
-
(2007)
Association mapping in plants
, pp. 53-76
-
-
Edwards, D.1
Batley, J.2
Cogan, N.O.I.3
Forster, J.W.4
Chagné, D.5
-
19
-
-
84871881613
-
SNP discovery and applications in Brassica napus
-
Hayward A, Dalton-Morgan J, Mason A, Zander M, Edwards D, Batley J (2012) SNP discovery and applications in Brassica napus. J Plant Biotechnol 39:1–12
-
(2012)
J Plant Biotechnol
, vol.39
, pp. 1-12
-
-
Hayward, A.1
Dalton-Morgan, J.2
Mason, A.3
Zander, M.4
Edwards, D.5
Batley, J.6
-
20
-
-
70249108523
-
Genome sequence data: Management, storage, and visualization
-
Batley J, Edwards D (2009) Genome sequence data: management, storage, and visualization. Biotechniques 46:333–336
-
(2009)
Biotechniques
, vol.46
, pp. 333-336
-
-
Batley, J.1
Edwards, D.2
-
21
-
-
79959435199
-
Genomewide genetic marker discovery and genotyping using next-generation sequencing
-
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML (2011) Genomewide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet 12:499–510
-
(2011)
Nat Rev Genet
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
22
-
-
43149110423
-
Complexity reduction of polymorphic sequences (CRoPS (TM)): A novel approach for large-scale polymorphism discovery in complex genomes
-
van Orsouw NJ, Hogers RCJ, Janssen A, Yalcin F, Snoeijers S, Verstege E, Schneiders H, van der Poel H, van Oeveren J, Verstegen H, van Eijk MJT (2007) Complexity reduction of polymorphic sequences (CRoPS (TM)): a novel approach for large-scale polymorphism discovery in complex genomes. PLoS One 2:e1172
-
(2007)
PLoS One
, vol.2
, pp. 1172
-
-
van Orsouw, N.J.1
Hogers, R.C.J.2
Janssen, A.3
Yalcin, F.4
Snoeijers, S.5
Verstege, E.6
Schneiders, H.7
van der Poel, H.8
van Oeveren, J.9
Verstegen, H.10
van Eijk, M.J.T.11
-
23
-
-
77957742080
-
Development of highly polymorphic SNP markers from the complexity reduced portion of maize (Zea mays L.) genome for use in marker-assisted breeding
-
Mammadov J, Chen W, Ren R, Pai R, Marchione W, Yalçin F, Witsenboer H, Greene T, Thompson S, Kumpatla S (2010) Development of highly polymorphic SNP markers from the complexity reduced portion of maize (Zea mays L.) genome for use in marker-assisted breeding. Theor Appl Genet 121:577–588
-
(2010)
Theor Appl Genet
, vol.121
, pp. 577-588
-
-
Mammadov, J.1
Chen, W.2
Ren, R.3
Pai, R.4
Marchione, W.5
Yalçin, F.6
Witsenboer, H.7
Greene, T.8
Thompson, S.9
Kumpatla, S.10
-
25
-
-
84862965557
-
The state of field of high-throughput SNP genotyping system
-
3–5 Nov 2011
-
Zheng L, Bin L, Yan D, Nongyue H (2011) The state of field of high-throughput SNP genotyping system. In: Bioelectronics and bioinformatics (ISBB), 2011 international symposium, 3–5 Nov 2011, pp 174–177
-
(2011)
Bioelectronics and bioinformatics (ISBB), 2011 international symposium
, pp. 174-177
-
-
Zheng, L.1
Bin, L.2
Yan, D.3
Nongyue, H.4
-
27
-
-
84873068132
-
Overview of genotyping
-
In: Rapley R, Harbron S, John Wiley & Sons, Ltd
-
Bayés M, Gut IG (2011) Overview of genotyping. In: Rapley R, Harbron S (eds) Molecular analysis and genome discovery. John Wiley & Sons, Ltd, pp 1–23
-
(2011)
Molecular analysis and genome discovery
, pp. 1-23
-
-
Bayés, M.1
Gut, I.G.2
-
28
-
-
84921800419
-
-
Fluidigm (2012) Biomark HD system. http://www.fl uidigm.com/biomark-hd-system.html
-
(2012)
Biomark HD system
-
-
-
29
-
-
84921764797
-
-
OpenArray ® Real- Time PCR System
-
LifeTechnologies (2012) OpenArray ® Real- Time PCR System. http://www.appliedbiosystems.com/absite/us/en/home/applications-technologies/real-time-pcr/real-time-pcr-instruments/openarray-realtime-pcr-system.html
-
(2012)
-
-
-
30
-
-
84921771054
-
-
LightScanner ® system mutation discovery
-
Biofire (2012) LightScanner ® system mutation discovery, Gene scanning and genotyping. biofire diagnostics. http://www.biofiredx.com/LightScanner/
-
(2012)
Gene scanning and genotyping. biofire diagnostics
-
-
-
31
-
-
77950554227
-
Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation
-
Tindall EA, Petersen DC, Nikolaysen S, Miller W, Schuster SC, Hayes VM (2010) Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation. BMC Res Notes 3:39
-
(2010)
BMC Res Notes
, vol.3
, pp. 39
-
-
Tindall, E.A.1
Petersen, D.C.2
Nikolaysen, S.3
Miller, W.4
Schuster, S.C.5
Hayes, V.M.6
-
32
-
-
78649244510
-
SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napus
-
Durstewitz G, Polley A, Plieske J, Luerssen H, Graner EM, Wieseke R, Ganal MW (2010) SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napus. Genome 53:948–956
-
(2010)
Genome
, vol.53
, pp. 948-956
-
-
Durstewitz, G.1
Polley, A.2
Plieske, J.3
Luerssen, H.4
Graner, E.M.5
Wieseke, R.6
Ganal, M.W.7
-
33
-
-
84863143122
-
Current state-of-art of sequencing technologies for plant genomics research
-
Thudi M, Li YP, Jackson SA, May GD, Varshney RK (2012) Current state-of-art of sequencing technologies for plant genomics research. Brief Funct Genomics 11:3–11
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 3-11
-
-
Thudi, M.1
Li, Y.P.2
Jackson, S.A.3
May, G.D.4
Varshney, R.K.5
-
34
-
-
77954526823
-
The case for cloud computing in genome informatics
-
Stein LD (2010) The case for cloud computing in genome informatics. Genome Biol 11:207
-
(2010)
Genome Biol
, vol.11
, pp. 207
-
-
Stein, L.D.1
-
35
-
-
84870057823
-
Bioinformatics clouds for big data manipulation
-
Dai L, Xin G, Yan G, Jingfa X, Zhang Z (2012) Bioinformatics clouds for big data manipulation. Biol Direct 7:43
-
(2012)
Biol Direct
, vol.7
, pp. 43
-
-
Dai, L.1
Xin, G.2
Yan, G.3
Jingfa, X.4
Zhang, Z.5
-
36
-
-
71949131301
-
Plant genome sequencing: Applications for crop improvement
-
Edwards D, Batley J (2010) Plant genome sequencing: applications for crop improvement. Plant Biotechnol J 8:2–9
-
(2010)
Plant Biotechnol J
, vol.8
, pp. 2-9
-
-
Edwards, D.1
Batley, J.2
-
37
-
-
70450169667
-
De novo sequencing of plant genomes using secondgeneration technologies
-
Imelfort M, Edwards D (2009) De novo sequencing of plant genomes using secondgeneration technologies. Brief Bioinform 10: 609–618
-
(2009)
Brief Bioinform
, vol.10
, pp. 609-618
-
-
Imelfort, M.1
Edwards, D.2
-
38
-
-
65349182945
-
Genome sequencing approaches and successes
-
Somers DJ, Langridge P, Gustafson JP (eds), Humana, Kentucky
-
Imelfort M, Batley J, Grimmond S, Edwards D (2009) Genome sequencing approaches and successes. In: Somers DJ, Langridge P, Gustafson JP (eds) Plant genomics. Humana, Kentucky, pp 345–358
-
(2009)
Plant genomics
, pp. 345-358
-
-
Imelfort, M.1
Batley, J.2
Grimmond, S.3
Edwards, D.4
-
39
-
-
84863126127
-
Bioinformatics tools and databases for analysis of nextgeneration sequence data
-
Lee HC, Lai KT, Lorenc MT, Imelfort M, Duran C, Edwards D (2012) Bioinformatics tools and databases for analysis of nextgeneration sequence data. Brief Funct Genomics 11:12–24
-
(2012)
Brief Funct Genomics
, vol.11
, pp. 12-24
-
-
Lee, H.C.1
Lai, K.T.2
Lorenc, M.T.3
Imelfort, M.4
Duran, C.5
Edwards, D.6
-
40
-
-
84863596169
-
Single nucleotide polymorphism discovery from wheat nextgeneration sequence data
-
Lai K, Duran C, Berkman PJ, Lorenc MT, Stiller J, Manoli S, Hayden MJ, Forrest KL, Fleury D, Baumann U, Zander M, Mason AS, Batley J, Edwards D (2012) Single nucleotide polymorphism discovery from wheat nextgeneration sequence data. Plant Biotechnol J 10:743–749
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 743-749
-
-
Lai, K.1
Duran, C.2
Berkman, P.J.3
Lorenc, M.T.4
Stiller, J.5
Manoli, S.6
Hayden, M.J.7
Forrest, K.L.8
Fleury, D.9
Baumann, U.10
Zander, M.11
Mason, A.S.12
Batley, J.13
Edwards, D.14
|