Metabolic engineering of terpene biosynthesis in plants using a trichome-specific transcription factor MsYABBY5 from spearmint (Mentha spicata)

Plant Biotechnology Journal

Volumn 14, Issue 7, 2016, Pages 1619-1632

  Wang, Qian ^a   Reddy, Vaishnavi Amarr ^a   Panicker, Deepa ^a   Mao, Hui Zhu ^a   Kumar, Nadimuthu ^a   Rajan, Chakravarthy ^a   Venkatesh, Prasanna Nori ^a   Chua, Nam Hai ^b   Sarojam, Rajani ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b ROCKEFELLER UNIVERSITY   (United States)

Author keywords

secondary metabolism; spearmint; sweet basil; terpene; transcription factor; YABBY

Indexed keywords

PLANT PROTEIN; TERPENE; TRANSCRIPTION FACTOR;

BASIL; GENE EXPRESSION REGULATION; GENETICS; MENTHA SPICATA; METABOLIC ENGINEERING; METABOLISM; RNA INTERFERENCE; TRANSGENIC PLANT; TRICHOME;

GENE EXPRESSION REGULATION, PLANT; MENTHA SPICATA; METABOLIC ENGINEERING; METABOLIC NETWORKS AND PATHWAYS; OCIMUM BASILICUM; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; RNA INTERFERENCE; TERPENES; TRANSCRIPTION FACTORS; TRICHOMES;

EID: 84975474159     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12525     Document Type: Article

References (65)

1. Arason, G.J. (1996) Lectins as defence molecules in vertebrates and invertebrates. Fish Shellfish Immun. 6, 277–289. Aukerman, M.J. and Amasino, R.M. (1998) Floral induction and florigen. Cell, 93, 491–494.
2. Bai, F., Reinheimer, R., Durantini, D., Kellogg, E.A. and Schmidt, R.J. (2012) TCP transcription factor, branch angle deffective1 (bad1), is required for normal tassel branch angle formation in maize. Proc. Natl Acad. Sci. USA, 109, 12225–12230.
3. Banerjee, S. and Goswami, R. (2013) GST profile expression study in some selected plants: in silico approach. Mol. Cell. Biochem. 380, 283–300.
4. Barazesh, S. and McSteen, P. (2008) Barren inflorescence1 functions in organogenesis during vegetative and inflorescence development in maize. Genetics, 179, 389–401.
5. Berke, T.G. and Rocheford, T.R. (1999) Quantitative trait loci for tassel traits in maize. Crop Sci. 39, 1439–1443.
6. Blatt, M., Johansson, I., Paneque, M., Pratelli, R., Campanoni, P., Sokolovski, S. and Honsbein, A. (2008) SNAREs at the traffic junction with signalling, transport and nutrition. Comp Biochem Phys A 150, S141–S141.
7. Boerjan, W., Ralph, J. and Baucher, M. (2003) Lignin biosynthesis. Annu. Rev. Plant Biol. 54, 519–546.
8. Bogoeva, V.P., Radeva, M.A., Atanasova, L.Y., Stoitsova, S.R. and Boteva, R.N. (2004) Fluorescence analysis of hormone binding activities of wheat germ agglutinin. Biochim. Biophys. Acta, 1698, 213–218.
9. Bolduc, N., Yilmaz, A., Mejia-Guerra, M.K., Morohashi, K., O’Connor, D., Grotewold, E. and Hake, S. (2012) Unraveling the KNOTTED1 regulatory network in maize meristems. Genes Dev. 26, 1685–1690.
10. Bomblies, K., Wang, R.L., Ambrose, B.A., Schmidt, R.J., Meeley, R.B. and Doebley, J. (2003) Duplicate FLORICAULA/LEAFY homologs zfl1 and zfl2 control inflorescence architecture and flower patterning in maize. Development, 130, 2385–2395.
11. Bommert, P., Lunde, C., Nardmann, J., Vollbrecht, E., Running, M., Jackson, D., Hake, S. et al. (2005) thick tassel dwarf1 encodes a putative maize ortholog of the Arabidopsis CLAVATA1 leucine-rich repeat receptor-like kinase. Development, 132, 1235–1245.
12. Brewbaker, J.L. (2015) Diversity and genetics of tassel branch numbers in maize. Crop Sci. 55, 65–78.
13. Brown, P.J., Upadyayula, N., Mahone, G.S., Tian, F., Bradbury, P.J., Myles, S., Holland, J.B. et al. (2011) Distinct genetic architectures for male and female inflorescence traits of maize. PLoS Genet. 7, e1002383.
14. Buckler, E.S., Holland, J.B., Bradbury, P.J., Acharya, C.B., Brown, P.J., Browne, C., Ersoz, E. et al. (2009) The genetic architecture of maize flowering time. Science, 325, 714–718.
15. Chen, Z., Wang, B., Dong, X., Liu, H., Ren, L., Chen, J., Hauck, A. et al. (2014) An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F(2) maize population. BMC Genom. 15, 433.
16. Chuck, G., Muszynski, M., Kellogg, E., Hake, S. and Schmidt, R.J. (2002) The control of spikelet meristem identity by the branched silkless1 gene in maize. Science, 298, 1238–1241.
17. Chuck, G., Meeley, R., Irish, E., Sakai, H. and Hake, S. (2007) The maize tasselseed4 microRNA controls sex determination and meristem cell fate by targeting Tasselseed6/indeterminate spikelet1. Nat. Genet. 39, 1517–1521.
18. Chuck, G., Whipple, C., Jackson, D. and Hake, S. (2010) The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries. Development, 137, 1243–1250.
19. Chuck, G.S., Brown, P.J., Meeley, R. and Hake, S. (2014) Maize SBP-box transcription factors unbranched2 and unbranched3 affect yield traits by regulating the rate of lateral primordia initiation. Proc. Natl Acad. Sci. USA, 111, 18775–18780.
20. Colasanti, J., Yuan, Z. and Sundaresan, V. (1998) The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize. Cell, 93, 593–603.
21. Cook, J.P., McMullen, M.D., Holland, J.B., Tian, F., Bradbury, P., Ross-Ibarra, J., Buckler, E.S. et al. (2012) Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol. 158, 824–834.
22. Crue, R. and Wasson, C. (1996) Genetic analysis of tassel size and leaf senescence and their relationship with yield in two tropical low lands maize populations. Crop Sci. 4, 275–281.
23. De Hoff, P.L., Brill, L.M. and Hirsch, A.M. (2009) Plant lectins: the ties that bind in root symbiosis and plant defense. Mol. Genet. Genomics, 282, 1–15.
24. Dubots, E., Audry, M., Yamaryo, Y., Bastien, O., Ohta, H., Breton, C., Marechal, E. et al. (2010) Activation of the chloroplast monogalactosyldiacylglycerol synthase MGD1 by phosphatidic acid and phosphatidylglycerol. J. Biol. Chem. 285, 6003–6011.
25. Duvick, D.N. and Cassman, K.G. (1999) Post-green revolution trends in yield potential of temperate maize in the north-central United States. Crop Sci. 39, 1622–1630.
26. Elshire, R.J., Glaubitz, J.C., Sun, Q., Poland, J.A., Kawamoto, K., Buckler, E.S. and Mitchell, S.E. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 6, e19379.
27. Eveland, A.L., Goldshmidt, A., Pautler, M., Morohashi, K., Liseron-Monfils, C., Lewis, M.W., Kumari, S. et al. (2014) Regulatory modules controlling maize inflorescence architecture. Genome Res. 24, 431–443.
28. Fornale, S., Sonbol, F.M., Maes, T., Capellades, M., Puigdomenech, P., Rigau, J. and Caparros-Ruiz, D. (2006) Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factors. Plant Mol. Biol. 62, 809–823.
29. Hallauer, A.R. and Miranda, J.B. (1988) Quantitative Genetics in Maize Breeding. Ames, IA: Iowa State University, 283.
30. van Heerwaarden, J., Hufford, M.B. and Ross-Ibarra, J. (2012) Historical genomics of North American maize. Proc. Natl Acad. Sci. USA, 109, 12420– 12425.
31. Hultquist, J.F. and Dorweiler, J.E. (2008) Feminized tassels of maize mop1 and ts1 mutants exhibit altered levels of miR156 and specific SBP-box genes. Planta, 229, 99–113.
32. Kindiger, B., Blakey, C.A. and Dewald, C. (1995) Sex reversal in Maize X Tripsacum hybrids-allelic non-complementation of Ts2 And Gsf1. Maydica, 40, 187–190.
33. Kriechbaumer, V., Weigang, L., Fiesselmann, A., Letzel, T., Frey, M., Gierl, A. and Glawischnig, E. (2008) Characterisation of the tryptophan synthase alpha subunit in maize. BMC Plant Biol. 8, 44.
34. Kump, K.L., Bradbury, P.J., Wisser, R.J., Buckler, E.S., Belcher, A.R., Oropeza-Rosas, M.A., Zwonitzer, J.C. et al. (2011) Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nat. Genet. 43, 163–168.
35. Li, H., Ye, G. and Wang, J. (2007) A modified algorithm for the improvement of composite interval mapping. Genetics, 175, 361–374.
36. Li, C.H., Li, Y.X., Bradbury, P.J., W, X., Shi, Y.S., Song, Y.C., Zhang, D.F. et al. (2015) Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in Maize. BMC Biol., 13, 78.
37. Lipka, A.E., Tian, F., Wang, Q., Peiffer, J., Li, J., Bradbury, P.J., Gore, M.A. et al. (2012) GAPIT: genome association and prediction integrated tool. Bioinformatics 28, 2397–2399.
38. McMullen, M.D., Kresovich, S., Villeda, H.S., Bradbury, P., Li, H., Sun, Q., Flint-Garcia, S. et al. (2009) Genetic properties of the maize nested association mapping population. Science, 325, 737–740.
39. McSteen, P. and Hake, S. (2001) barren inflorescence2 regulates axillary meristem development in the maize inflorescence. Development, 128, 2881– 2891.
40. Mickelson, S.M., Stuber, C.S., Senior, L. and Kaeppler, S.M. (2002) Quantitative trait loci controlling leaf and tassel traits in a B73 x MO17 population of maize. Crop Sci. 42, 1902–1909.
41. Mir, C., Zerjal, T., Combes, V., Dumas, F., Madur, D., Bedoya, C., Dreisigacker, S. et al. (2013) Out of America: tracing the genetic footprints of the global diffusion of maize. Theor Appl Genet 126, 2671–2682.
42. Miyoshi, K., Ahn, B.O., Kawakatsu, T., Ito, Y., Itoh, J.I., Nagato, Y. and Kurata, N. (2004) PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450. Proc. Natl Acad. Sci. USA, 101, 875–880.
43. Nishii, A., Takemura, M., Fujita, H., Shikata, M., Yokota, A. and Kohchi, T. (2000) Characterization of a novel gene encoding a putative single zinc-finger protein, ZIM, expressed during the reproductive phase in Arabidopsis thaliana. Biosci. Biotechnol. Biochem. 64, 1402–1409.
44. Peiffer, J.A., Romay, M.C., Gore, M.A., Flint-Garcia, S.A., Zhang, Z., Millard, M.J., Gardner, C.A. et al. (2014) The genetic architecture of maize height. Genetics, 196, 1337–1356.
45. Petroni, K. and Tonelli, C. (2011) Recent advances on the regulation of anthocyanin synthesis in reproductive organs. Plant Sci. 181, 219–229.
46. Piperno, D.R. and Flannery, K.V. (2001) The earliest archaeological maize (Zea mays L.) from highland Mexico: new accelerator mass spectrometry dates and their implications. Proc. Natl Acad. Sci. USA, 98, 2101–2103.
47. Preston, J.C., Wang, H., Kursel, L., Doebley, J. and Kellogg, E.A. (2012) The role of teosinte glume architecture (tga1) in coordinated regulation and evolution of grass glumes and inflorescence axes. New Phytol. 193, 204–215.
48. Satoh-Nagasawa, N., Nagasawa, N., Malcomber, S., Sakai, H. and Jackson, D. (2006) A trehalose metabolic enzyme controls inflorescence architecture in maize. Nature, 441, 227–230.
49. Schnee, C., Kollner, T.G., Gershenzon, J. and Degenhardt, J. (2002) The maize gene terpene synthase 1 encodes a sesquiterpene synthase catalyzing the formation of (E)-beta-farnesene, (E)-nerolidol, and (E, E)-farnesol after herbivore damage. Plant Physiol. 130, 2049–2060.
50. Taguchi-Shiobara, F., Yuan, Z., Hake, S. and Jackson, D. (2001) The fasciated ear2 gene encodes a leucine-rich repeat receptor-like protein that regulates shoot meristem proliferation in maize. Genes Dev. 15, 2755–2766.
51. Tanaka, W., Pautler, M., Jackson, D. and Hirano, H.Y. (2013) Grass meristems II: inflorescence architecture, flower development and meristem fate. Plant Cell Physiol. 54, 313–324.
52. Tian, F., Bradbury, P.J., Brown, P.J., Hung, H., Sun, Q., Flint-Garcia, S., Rocheford, T.R. et al. (2011) Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat. Genet. 43, 159–162.
53. Tominaga-Wada, R., Iwata, M., Nukumizu, Y., Sano, R. and Wada, T. (2012) A full-length R-like basic-helix-loop-helix transcription factor is required for anthocyanin upregulation whereas the N-terminal region regulates epidermal hair formation. Plant Sci. 183, 115–122.
54. Upadyayula, N., da Silva, H.S., Bohn, M.O. and Rocheford, T.R. (2006) Genetic and QTL analysis of maize tassel and ear inflorescence architecture. Theor. Appl. Genet. 112, 592–606.
55. Vedovato, M., Rossi, V., Dacks, J.B. and Filippini, F. (2009) Comparative analysis of plant genomes allows the definition of the “Phytolongins”: a novel non-SNARE longin domain protein family. BMC Genom., 10, 1–13.
56. Vollbrecht, E., Springer, P.S., Goh, L., Buckler, E.S. and Martienssen, R. (2005) Architecture of floral branch systems in maize and related grasses. Nature, 436, 1119–1126.
57. Walsh, J., Waters, C.A. and Freeling, M. (1998) The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the leaf blade-sheath boundary. Gene Dev. 12, 208–218.
58. Wang, R., Yu, Y., Zhao, J., Shi, Y., Song, Y., Wang, T. and Li, Y. (2008) Population structure and linkage disequilibrium of a mini core set of maize inbred lines in China. Theor. Appl. Genet. 117, 1141–1153.
59. Wang, T.Y., Ma, X.L., Li, Y., Bai, D.P., Liu, C., Liu, Z.Z., Tan, X.J. et al. (2011) Changes in yield and yield components of single-cross maize hybrids released in China between 1964 and 2001. Crop Sci. 51, 512–525.
60. Wenefrida, I., Utomo, H.S. and Linscombe, S.D. (2013) Mutational breeding and genetic engineering in the development of high grain protein content. J. Agric. Food Chem. 61, 11702–11710.
61. White, D.W.R. (2006) PEAPOD regulates lamina size and curvature in Arabidopsis. Proc. Natl Acad. Sci. USA, 103, 13238–13243.
62. Wu, X., Li, Y., Shi, Y., Song, Y., Wang, T., Huang, Y. and Li, Y. (2014) Fine genetic characterization of elite maize germplasm using high-throughput SNP genotyping. Theor. Appl. Genet. 127, 621–631.
63. Yan, J., Shah, T., Warburton, M.L., Buckler, E.S., McMullen, M.D. and Crouch, J. (2009) Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. PLoS ONE, 4, e8451.
64. Yang, N., Lu, Y.L., Yang, X.H., Huang, J., Zhou, Y., Ali, F., Wen, W.W. et al. (2014) Genome wide association studies using a new nonparametric model reveal the genetic architecture of 17 agronomic traits in an enlarged maize association panel. PLoS Genet. 10, e1004573.
65. Zhang, Z.W., Ersoz, E., Lai, C.Q., Todhunter, R.J., Tiwari, H.K., Gore, M.A., Bradbury, P.J. et al. (2010) Mixed linear model approach adapted for genome-wide association studies. Nat. Genet. 42, 355–U118.