Crowdsourcing a comprehensive clinical trial repository

AAAI Workshop - Technical Report

Volumn WS-14-08, Issue , 2014, Pages 40-44

  Van Valkenhoef, Gert ^a   Kuiper, Joel ^a  

^a UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL INTELLIGENCE;

AUTOMATED DATA; CLINICAL TRIAL; SYSTEMATIC REVIEW;

CROWDSOURCING;

EID: 84974807813     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (40)

1. Allen, I. E and Olkin, I. 1999. Estimating time to conduct a meta-analysis from number of citations retrieved. Journal of the American Medical Association 282(7):634-635.
2. Bastian, H.; Glasziou, P.; and Chalmers, I. 2010. Seventy-five trials and eleven systematic reviews a day: How will we ever keep up? PLoS Medicine 7(9):e1000326.
3. Bekhuis, T., and Demner-Fushman, D. 2010. Towards automating the initial screening phase of a systematic review. Studies in Health Technology and Informatics 160:146-150.
4. Boudin, F.; Nie, J. Y.;Bartlett, J. C.; Grad, R.; Pluye, P.; and Dawes, M. 2010. Combining classifiers for robust PICO element detection. BMC Medical Informatics and Decision Making 10:29.
5. Brabham, D. C. 2013. Crowdsourcing. MIT Press.
6. Carini, S.; Pollock, B. H.; Lehmann, H. P.; Bakken, S.; Barbour, E. M.; Gabriel, D.; Hagler, H. K.; Harper, C. R.; Mollah, S. A.; Nahm, M.; Nguyen, H. H.; Scheuermann, R. H.; and Sim, I. 2009. Development and evaluation of a study design typology for human research. In AMIA Annual Symposium Proceedings 2009, 81-85.
7. Cipriani, A.; Furukawa, T. A.; Salanti, G.; Geddes, J. R.; Hig- gins, J. P. T.; Churchill, R.; Watanabe, N.; Nakagawa, A.; Omori, I. M.; McGuire, H.; Tansella, M.; and Barbui, C. 2009. Comparative efficacy and acceptability of 12 new-generation antidepressants: A multiple-treatments meta-analysis. The Lancet 373(9665):746-758.
8. Cohen, A. M., and Hersh, W. R. 2005. A survey of current work in biomedical text mining. Briefings in Bioinformatics 6:57-71.
9. Cohen, A.; Hersh, W.; Peterson, K.; and Yen, P.-Y. 2006. Reducing workload in systematic review preparation using automated citation classification. Journal of the American Medical Informatics Association 13(2):206219.
10. de Bruijn, B.; Carini, S.; Kiritchenko, S.; Martin, J.; and Sim, I. 2008. Automated information extraction of key trial design elements from clinical trial publications. In AMIA Annual Symposium Proceedings 2008, 141-145.
11. Dickersin, K., and Rennie, D. 2003. Registering clinical trials. Journal of the American Medical Informatics Association 290(4):516-523.
12. Doan, A.; Ramakrishnan, R.; and Halevy, A. Y. 2011. Crowdsourcing systems on the world-wide web. Communications of the ACM 54(4):86.
13. Fowler, M. 2005. Event sourcing. In Development of Further Patterns of Enterprise Application Architecture.
14. Fridsma, D. B.; Evans, J.; Hastak, S.; and Mead, C. N. 2008. The BRIDG project: A technical report. Journal of the American Medical Informatics Association 15(2): 130-137.
15. Giardine, B.; Borg, J.; Higgs, D. R.; Peterson, K. R.; Philipsen, S.; Maglott, D.; Singleton, B. K.; Anstee, D. J.; Basak, A. N.; Clark, B. et al. 2011. Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach. Nature Genetics 43(4):295-301.
16. Higgins, J., and Green, S., eds. 2009. Cochrane Handbook for Systematic Reviews of Interventions Version 5.0.2 [updated September 2009]. The Cochrane Collaboration. Available from http://www.cochrane-handbook.org.
17. Ip, S.; Hadar, N.; Keefe, S.; Parkin, C.; Iovin, R.; Balk, E. M.; and Lau, J. 2012. A web-based archive of systematic review data. Systematic reviews 1:15.
18. Kalfoglou, Y., and Schorlemmer, M. 2003. Ontology mapping: The state of the art. The Knowledge Engineering Review 18(1):1-31.
19. Kim, S.; Martinez, D.; Cavedon, L.; and Yencken, L. 2011. Automatic classification of sentences to support evidence based medicine. BMC Bioinformatics 12(Suppl 2):S5.
20. Kiritchenko, S.; de Bruijn, B.; Carini, S.; Martin, J.; and Sim, I. 2010. ExaCT: Automatic extraction of clinical trial characteristics from journal publications. BMC Medical Informatics and Decision Making 10:56.
21. Kong, Y. M.; Dahlke, C.; Xiang, Q.; Qian, Y.; Karp, D.; and Scheuermann, R. H. 2011. Toward an ontology-based framework for clinical research databases. Journal of Biomedical Informatics 44(1):48-58.
22. Leucht, S.; Cipriani, A.; Spineli, L.; Mavridis, D.; rey, D.; Richter, F.; Samara, M.; Barbui, C.; Engel, R. R.; Geddes, J. R.; Kissling, W.; Stapf, M. P.; Lssig, B.; Salanti, G.; and Davis, J. M. 2013. Comparative efficacy and tolerability of 15 antipsychotic drugs in schizophrenia: A multiple-treatments metaanalysis. The Lancet 382(9896):951-962.
23. Moher, D.; Liberati, A.; Tetzlaff, J.; Altman, D. G.; and The PRISMA group. 2009. Preferred reporting items for systematic reviews and meta-analyses: The PRISMA statement. PLoS Medicine 6(7):e1000097.
24. Mons, B.; van Haagen, H.; Chichester, C.; THoen, P.-B.; den Dunnen, J. T.; van Ommen, G.; van Mulligen, E.; Singh, B.; Hooft, R.; Roos, M. et al. 2011. The value of data. Nature Genetics 43(4):281-283.
25. Orwin, R. G., and Vevea, J. L. 2009. Evaluating coding decisions. In Cooper, H.; Hedges, L. V.; and Valentine, J. C., eds., The handbook of research synthesis and meta-analysis. New York, NY, USA: Sage, 2nd edition. 177-203.
26. Patrinos, G. P.; Cooper, D. N.; van Mulligen, E.; Gkantouna, V.; Tzimas, G.; Tatum, Z.; Schultes, E.; Roos, M.; and Mons, B. 2012. Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain. Human Mutation 33(11): 1503-1512.
27. Rahm, E., and Bernstein, P. A. 2001. A survey of approaches to automatic schema matching. The VLDB Journal 10(4):334- 350.
28. Ram, K. 2013. Git can facilitate greater reproducibility and increased transparency in science. Source code for biology and medicine 8(1 ):7.
29. Ramchurn, S. D.; Huynh, D.; and Jennings, N. R. 2004. Trust in multi-agent systems. The Knowledge Engineering Review 19(1):1-25.
30. Richardson, M and Domingos, P. 2003. Building large knowledge bases by mass collaboration. In Proceedings of the 2nd international conference on Knowledge capture, 129-137.
31. Shapiro, M.; Preguifa, N.; Baquero, C.; and Zawirski, M. 2011. A comprehensive study of convergent and commutative replicated data types. Rapport de recherche RR-7506, INRIA.
32. Shemilt, I.; Simon, A.; Hollands, G. J.; Marteau, T. M.; Ogilvie, D.; OMara-Eves, A.; Kelly, M. P.; and Thomas, J. 2014. Pinpointing needles in giant haystacks: use of text mining to reduce impractical screening workload in extremely large scoping reviews. Research Synthesis Methods 5(1):31-49.
33. Shvaiko, P., and Euzenat, J. 2005. A survey of schema-based matching approaches. In Spaccapietra, S., ed., Journal on Data Semantics IV, volume 3730 of Lecture Notes in Computer Sci-ence. Springer Berlin Heidelberg. 146-171.
34. Sim, I., and Detmer, D. 2005. Beyond trial registration: A global trial bank for clinical trial reporting. PLoS Medicine 2(11):1090-1092.
35. Sim, I.; Owens, D. K.; Lavori, P. W.; and Rennels, G. D. 2000. Electronic trial banks: A complementary method for reporting randomized trials. Medical Decision Making 20(4):440-450.
36. Van Valkenhoef, G.; Tervonen, T.; de Brock, B.; and Hillege, H. 2012. Deficiencies in the transfer and availability of clinical evidence in drug development and regulation. BMC Medical Informatics and Decision Making 12:95.
37. van Valkenhoef, G.; Tervonen, T.; Zwinkels, T.; de Brock, B.; and Hillege, H. 2013. ADDIS: A decision support system for evidence-based medicine. Decision Support Systems 55(2):459-475.
38. Wallace, B. C.; Small, K.; Brodley, C. E.; and Trikalinos, T. A. 2010. Active learning for biomedical citation screening. Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining - KDD 10.
39. Wallace, B. C.; Small, K.; Brodley, C. E.; Lau, J.; and Trikalinos, T. A. 2011. Deploying an interactive machine learning system in an evidence-based practice center: Abstrackr. In ACM SIGHIT International Health Informatics Symposium (IHI).
40. Weld, D. S.; Wu, F.; Adar, E.; Amershi, S.; Fogarty, J.; Hoffmann, R.; Patel, K.; and Skinner, M. 2008. Intelligence in wikipedia. In Proceedings of the Twenty-Third AAAI Conference on Artificial Intelligence, 1609-1614.